Wall clock time and date at job start Tue Mar 31 2020 14:14:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46998 * 2 1 4 4 C 1.52998 * 109.47072 * 119.99694 * 2 1 3 5 5 C 1.53002 * 109.47375 * 184.99975 * 4 2 1 6 6 N 1.46493 * 109.47407 * 180.02562 * 5 4 2 7 7 C 1.36941 * 120.00201 * 180.02562 * 6 5 4 8 8 H 1.07997 * 119.99340 * 359.97438 * 7 6 5 9 9 C 1.38809 * 119.99845 * 179.97438 * 7 6 5 10 10 N 1.31614 * 120.00210 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99568 * 179.97438 * 9 7 6 12 12 H 1.48507 * 109.47116 * 89.99922 * 11 9 7 13 13 H 1.48504 * 109.47092 * 209.99635 * 11 9 7 14 14 H 1.48496 * 109.47406 * 330.00069 * 11 9 7 15 15 N 1.46500 * 109.47176 * 239.99780 * 2 1 3 16 16 C 1.34778 * 119.99899 * 85.00017 * 15 2 1 17 17 O 1.21276 * 120.00008 * 0.02562 * 16 15 2 18 18 C 1.50704 * 119.99701 * 180.02562 * 16 15 2 19 19 H 1.08998 * 109.47244 * 60.00401 * 18 16 15 20 20 C 1.52995 * 109.46991 * 299.99988 * 18 16 15 21 21 N 1.46502 * 109.46911 * 179.97438 * 18 16 15 22 22 C 1.34769 * 120.00003 * 204.99887 * 21 18 16 23 23 O 1.21614 * 120.00201 * 0.02562 * 22 21 18 24 24 C 1.47378 * 120.00151 * 180.02562 * 22 21 18 25 25 C 1.47020 * 127.19340 * 179.97438 * 24 22 21 26 26 C 1.34184 * 105.95357 * 179.97438 * 25 24 22 27 27 O 1.34209 * 109.12515 * 0.02562 * 26 25 24 28 28 C 1.33658 * 110.90640 * 359.97438 * 27 26 25 29 29 H 1.09001 * 109.46940 * 59.99863 * 1 2 3 30 30 H 1.08998 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.08995 * 109.46746 * 300.00543 * 1 2 3 32 32 H 1.08998 * 109.47101 * 304.99826 * 4 2 1 33 33 H 1.09003 * 109.46964 * 64.99953 * 4 2 1 34 34 H 1.08999 * 109.46933 * 300.00538 * 5 4 2 35 35 H 1.08998 * 109.47106 * 59.99583 * 5 4 2 36 36 H 0.97002 * 120.00265 * 359.97438 * 6 5 4 37 37 H 0.97004 * 119.99904 * 180.02562 * 10 9 7 38 38 H 0.96998 * 120.00209 * 265.00224 * 15 2 1 39 39 H 1.09004 * 109.47167 * 299.99954 * 20 18 16 40 40 H 1.08996 * 109.47193 * 60.00170 * 20 18 16 41 41 H 1.09009 * 109.46751 * 180.02562 * 20 18 16 42 42 H 0.97000 * 119.99846 * 25.00549 * 21 18 16 43 43 H 1.07999 * 127.02375 * 0.22997 * 25 24 22 44 44 H 1.07998 * 125.43737 * 180.02562 * 26 25 24 45 45 H 1.08002 * 125.79551 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5649 -0.6133 1.3138 6 7 4.0532 -1.3043 2.5096 7 6 5.3953 -1.3403 2.7795 8 1 6.0936 -0.8596 2.1106 9 6 5.8579 -1.9947 3.9129 10 7 5.0067 -2.5800 4.7284 11 14 7.6887 -2.0444 4.2807 12 1 8.0589 -0.8699 5.1108 13 1 8.0119 -3.2927 5.0174 14 1 8.4507 -2.0099 3.0067 15 7 2.0184 -0.6907 -1.1961 16 6 2.1471 -0.0183 -2.3571 17 8 1.8591 1.1585 -2.4115 18 6 2.6489 -0.7290 -3.5877 19 1 1.9760 -1.5507 -3.8326 20 6 4.0513 -1.2800 -3.3222 21 7 2.6978 0.2122 -4.7093 22 6 2.6180 -0.2433 -5.9752 23 8 2.5051 -1.4356 -6.1864 24 6 2.6677 0.7035 -7.1036 25 6 2.5954 0.3829 -8.5366 26 6 2.6794 1.5564 -9.1818 27 8 2.7951 2.5455 -8.2821 28 6 2.7902 2.0604 -7.0366 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.6054 -0.2616 2.1369 33 1 1.7516 -1.7715 1.2056 34 1 3.9995 -1.0727 0.4260 35 1 3.8533 0.4370 1.3573 36 1 3.4259 -1.7357 3.1106 37 1 5.3300 -3.0370 5.5207 38 1 2.2491 -1.6318 -1.1526 39 1 4.7243 -0.4581 -3.0774 40 1 4.0145 -1.9803 -2.4878 41 1 4.4144 -1.7936 -4.2124 42 1 2.7876 1.1633 -4.5408 43 1 2.4913 -0.5967 -8.9794 44 1 2.6575 1.6845 -10.2539 45 1 2.8696 2.6438 -6.1312 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497192540.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:08 Heat of formation + Delta-G solvation = -80.657325 kcal Electronic energy + Delta-G solvation = -26648.342821 eV Core-core repulsion = 22666.617663 eV Total energy + Delta-G solvation = -3981.725158 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.49284 -41.50253 -40.20203 -37.95892 -36.24014 -35.99510 -34.09441 -33.63650 -32.64247 -31.39375 -30.22542 -29.38493 -26.20473 -25.80492 -24.50034 -23.20733 -22.42991 -22.02011 -21.42105 -21.20958 -19.76858 -19.16642 -17.99253 -17.75869 -17.25851 -17.08974 -16.76487 -16.52114 -16.17752 -15.78773 -15.70029 -15.43877 -15.22210 -15.03280 -14.78208 -14.52629 -14.27518 -13.85973 -13.83551 -13.52198 -13.42078 -13.28700 -13.08958 -12.89090 -12.88314 -12.71803 -12.36911 -12.26017 -11.98111 -11.92100 -11.63572 -11.30282 -11.00482 -10.92792 -10.87028 -10.34678 -10.12472 -9.75922 -8.99587 -7.95630 -5.24156 0.31015 1.11879 1.46272 1.47748 1.48850 1.57281 1.67856 2.05669 2.23574 2.36536 2.55611 3.38292 3.46746 3.59925 3.68779 3.76653 3.95363 4.01206 4.09476 4.11969 4.17867 4.40154 4.51838 4.57743 4.60904 4.66702 4.72252 4.76240 4.79495 4.85665 4.99186 4.99725 5.13976 5.19762 5.22815 5.28572 5.32789 5.35128 5.49423 5.52651 5.97409 6.27085 6.37616 6.43952 7.04845 7.09263 7.33732 8.09922 8.32677 9.27599 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017086 B = 0.002238 C = 0.002085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1638.356838 B =12509.010616 C =13423.255939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.154 3.846 3 H 0.076 0.924 4 C -0.120 4.120 5 C 0.153 3.847 6 N -0.746 5.746 7 C -0.245 4.245 8 H 0.073 0.927 9 C -0.075 4.075 10 N -0.967 5.967 11 Si 0.971 3.029 12 H -0.288 1.288 13 H -0.295 1.295 14 H -0.270 1.270 15 N -0.705 5.705 16 C 0.518 3.482 17 O -0.567 6.567 18 C 0.131 3.869 19 H 0.116 0.884 20 C -0.156 4.156 21 N -0.702 5.702 22 C 0.591 3.409 23 O -0.576 6.576 24 C -0.271 4.271 25 C -0.195 4.195 26 C -0.023 4.023 27 O -0.177 6.177 28 C 0.044 3.956 29 H 0.051 0.949 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.027 0.973 35 H 0.009 0.991 36 H 0.375 0.625 37 H 0.251 0.749 38 H 0.413 0.587 39 H 0.064 0.936 40 H 0.087 0.913 41 H 0.068 0.932 42 H 0.414 0.586 43 H 0.157 0.843 44 H 0.248 0.752 45 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 8.676 -25.995 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.049 3.951 3 H 0.094 0.906 4 C -0.159 4.159 5 C 0.027 3.973 6 N -0.389 5.389 7 C -0.377 4.377 8 H 0.091 0.909 9 C -0.268 4.268 10 N -0.618 5.618 11 Si 0.800 3.200 12 H -0.215 1.215 13 H -0.221 1.221 14 H -0.195 1.195 15 N -0.357 5.357 16 C 0.303 3.697 17 O -0.446 6.446 18 C 0.023 3.977 19 H 0.134 0.866 20 C -0.215 4.215 21 N -0.355 5.355 22 C 0.381 3.619 23 O -0.457 6.457 24 C -0.275 4.275 25 C -0.215 4.215 26 C -0.089 4.089 27 O -0.072 6.072 28 C -0.027 4.027 29 H 0.070 0.930 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.027 0.973 36 H 0.207 0.793 37 H 0.060 0.940 38 H 0.250 0.750 39 H 0.083 0.917 40 H 0.105 0.895 41 H 0.087 0.913 42 H 0.252 0.748 43 H 0.175 0.825 44 H 0.264 0.736 45 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -8.579 9.007 -26.275 29.070 hybrid contribution 0.887 -0.696 1.004 1.510 sum -7.692 8.311 -25.271 27.692 Atomic orbital electron populations 1.22094 0.93678 1.02945 1.02538 1.20861 0.94744 0.96608 0.82899 0.90617 1.21914 0.94743 1.01774 0.97424 1.20784 0.93359 0.94286 0.88888 1.42576 1.04452 1.65278 1.26598 1.19591 0.85330 1.27453 1.05280 0.90923 1.25549 1.01891 1.01366 0.97963 1.69800 1.34529 1.41939 1.15531 0.85176 0.80311 0.76600 0.77891 1.21526 1.22105 1.19476 1.46011 1.65963 1.14815 1.08926 1.20610 0.77021 0.86996 0.85040 1.90662 1.51795 1.16868 1.85293 1.20753 1.00033 0.92622 0.84340 0.86589 1.22113 0.93863 1.01977 1.03498 1.45530 1.74367 1.11580 1.04061 1.17526 0.74929 0.87274 0.82180 1.90763 1.51816 1.17714 1.85418 1.21504 1.17118 0.94234 0.94663 1.22964 1.06998 1.00738 0.90772 1.24654 1.03878 0.83960 0.96369 1.83852 1.70049 1.37919 1.15336 1.25022 0.97435 0.92716 0.87535 0.92992 0.91302 0.90502 0.90123 0.90366 0.95520 0.97327 0.79295 0.93983 0.75029 0.91674 0.89466 0.91312 0.74763 0.82496 0.73587 0.74313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.07 9.48 71.98 0.68 -2.38 16 2 C 0.15 3.59 2.57 44.99 0.12 3.70 16 3 H 0.08 2.03 7.58 -2.39 -0.02 2.01 16 4 C -0.12 -3.31 4.87 30.59 0.15 -3.16 16 5 C 0.15 5.69 6.15 86.38 0.53 6.22 16 6 N -0.75 -36.64 5.60 -343.47 -1.92 -38.57 16 7 C -0.24 -13.46 9.99 84.03 0.84 -12.62 16 8 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 9 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 10 N -0.97 -58.29 13.06 21.65 0.28 -58.01 16 11 Si 0.97 45.64 29.55 68.60 2.03 47.67 16 12 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 13 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 14 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 15 N -0.71 -14.90 4.42 -442.52 -1.96 -16.86 16 16 C 0.52 11.78 7.19 87.66 0.63 12.41 16 17 O -0.57 -15.71 15.50 -3.02 -0.05 -15.76 16 18 C 0.13 2.66 2.98 44.24 0.13 2.79 16 19 H 0.12 2.39 7.57 -2.39 -0.02 2.37 16 20 C -0.16 -3.00 9.38 71.98 0.68 -2.33 16 21 N -0.70 -14.00 4.94 -449.42 -2.22 -16.22 16 22 C 0.59 13.85 7.78 86.65 0.67 14.52 16 23 O -0.58 -17.53 16.64 -4.07 -0.07 -17.59 16 24 C -0.27 -5.10 6.31 -18.99 -0.12 -5.22 16 25 C -0.20 -3.20 11.01 23.65 0.26 -2.94 16 26 C -0.02 -0.24 12.03 66.89 0.80 0.56 16 27 O -0.18 -2.24 10.52 4.48 0.05 -2.20 16 28 C 0.04 0.56 11.61 67.39 0.78 1.34 16 29 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.08 2.25 8.14 -2.39 -0.02 2.24 16 33 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 34 H 0.03 0.96 7.75 -2.39 -0.02 0.94 16 35 H 0.01 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.38 19.45 7.67 -92.71 -0.71 18.74 16 37 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 38 H 0.41 7.44 8.02 -92.71 -0.74 6.70 16 39 H 0.06 1.28 8.14 -2.38 -0.02 1.26 16 40 H 0.09 1.51 7.56 -2.39 -0.02 1.49 16 41 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.41 7.01 6.76 -92.71 -0.63 6.39 16 43 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 44 H 0.25 0.33 8.06 -2.91 -0.02 0.30 16 45 H 0.24 1.39 7.47 -2.91 -0.02 1.37 16 Total: -1.00 -75.80 386.21 1.71 -74.09 By element: Atomic # 1 Polarization: 35.42 SS G_CDS: -1.05 Total: 34.37 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 6.62 Total: 9.08 kcal Atomic # 7 Polarization: -123.83 SS G_CDS: -5.82 Total: -129.65 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.07 Total: -35.55 kcal Atomic # 14 Polarization: 45.64 SS G_CDS: 2.03 Total: 47.67 kcal Total: -75.80 1.71 -74.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497192540.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.566 kcal (2) G-P(sol) polarization free energy of solvation -75.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.092 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds