Wall clock time and date at job start Tue Mar 31 2020 14:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47264 * 2 1 4 4 N 1.46509 * 109.46957 * 119.99723 * 2 1 3 5 5 C 1.34771 * 119.99767 * 275.00226 * 4 2 1 6 6 O 1.21608 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.47377 * 120.00058 * 180.02562 * 5 4 2 8 8 C 1.47022 * 127.19772 * 179.97438 * 7 5 4 9 9 C 1.34176 * 105.95749 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12236 * 0.02562 * 9 8 7 11 11 C 1.33649 * 110.90867 * 359.76042 * 10 9 8 12 12 C 1.50701 * 109.47346 * 239.99630 * 2 1 3 13 13 O 1.21283 * 120.00052 * 240.00138 * 12 2 1 14 14 N 1.34770 * 119.99922 * 59.99959 * 12 2 1 15 15 C 1.46500 * 120.00256 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46596 * 325.00243 * 15 14 12 17 17 C 1.53006 * 109.47249 * 84.99846 * 15 14 12 18 18 C 1.52997 * 109.47473 * 205.00145 * 15 14 12 19 19 C 1.53001 * 109.47049 * 64.99864 * 18 15 14 20 20 N 1.46496 * 109.46907 * 180.02562 * 19 18 15 21 21 C 1.36940 * 119.99895 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99861 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00211 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99686 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00151 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46984 * 60.00187 * 25 23 21 27 27 H 1.48501 * 109.46857 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46955 * 300.00272 * 25 23 21 29 29 H 1.09006 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 300.00334 * 1 2 3 31 31 H 1.09000 * 109.46920 * 60.00565 * 1 2 3 32 32 H 0.97002 * 119.99588 * 94.99976 * 4 2 1 33 33 H 1.08003 * 127.01759 * 359.93676 * 8 7 5 34 34 H 1.08000 * 125.43851 * 179.97438 * 9 8 7 35 35 H 1.08008 * 125.80128 * 180.27143 * 11 10 9 36 36 H 0.97005 * 120.00370 * 0.02562 * 14 12 2 37 37 H 1.09001 * 109.47002 * 60.00085 * 17 15 14 38 38 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 39 39 H 1.09000 * 109.47050 * 300.00351 * 17 15 14 40 40 H 1.08998 * 109.47192 * 185.00019 * 18 15 14 41 41 H 1.08998 * 109.46934 * 304.99865 * 18 15 14 42 42 H 1.08998 * 109.47250 * 300.00119 * 19 18 15 43 43 H 1.08998 * 109.47252 * 60.00195 * 19 18 15 44 44 H 0.97002 * 120.00674 * 0.02562 * 20 19 18 45 45 H 0.97001 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8582 1.1619 2.4116 7 6 2.6387 -0.7127 3.5604 8 6 2.8392 -0.1381 4.8988 9 6 3.2958 -1.1399 5.6657 10 8 3.3895 -2.2542 4.9235 11 6 2.9984 -2.0243 3.6664 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1191 14 7 1.7068 -0.2501 -2.4545 15 6 2.1947 -0.9411 -3.6506 16 1 3.1938 -1.3336 -3.4613 17 6 1.2502 -2.0947 -3.9942 18 6 2.2464 0.0418 -4.8220 19 6 3.2837 1.1282 -4.5308 20 7 3.3327 2.0696 -5.6521 21 6 4.1940 3.1337 -5.6156 22 1 4.8373 3.2785 -4.7603 23 6 4.2409 4.0255 -6.6783 24 7 3.4572 3.8486 -7.7209 25 14 5.4163 5.4765 -6.6288 26 1 6.8111 4.9799 -6.5154 27 1 5.2733 6.2720 -7.8746 28 1 5.0983 6.3313 -5.4568 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1527 33 1 2.6568 0.8822 5.2024 34 1 3.5485 -1.0618 6.7128 35 1 2.9730 -2.7527 2.8693 36 1 1.1494 0.5388 -2.5436 37 1 0.2511 -1.7022 -4.1835 38 1 1.6134 -2.6090 -4.8838 39 1 1.2133 -2.7950 -3.1597 40 1 2.5240 -0.4911 -5.7314 41 1 1.2668 0.5009 -4.9545 42 1 3.0061 1.6611 -3.6213 43 1 4.2633 0.6691 -4.3982 44 1 2.7547 1.9398 -6.4202 45 1 3.4902 4.4715 -8.4637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497192543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:11 Heat of formation + Delta-G solvation = -53.982761 kcal Electronic energy + Delta-G solvation = -26626.706541 eV Core-core repulsion = 22646.138080 eV Total energy + Delta-G solvation = -3980.568462 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.90586 -40.55057 -39.24226 -36.73773 -35.16624 -34.42208 -33.35501 -32.31413 -31.27116 -30.44145 -29.51212 -27.91626 -25.31758 -24.16486 -23.51986 -21.87458 -21.69938 -20.90205 -20.47280 -20.37471 -19.04887 -17.36885 -17.03202 -16.76494 -16.51442 -16.24605 -15.59774 -15.46054 -15.10835 -14.82263 -14.60950 -13.98438 -13.88368 -13.75703 -13.52481 -13.38418 -13.27396 -12.98077 -12.86387 -12.77951 -12.60528 -12.38223 -11.95264 -11.88163 -11.24984 -11.04644 -10.81506 -10.67658 -10.60864 -10.34484 -10.19312 -10.08485 -9.99310 -9.71241 -9.45329 -9.19249 -9.13338 -8.87283 -6.94208 -5.77770 -3.06721 0.97427 1.71182 2.43844 2.48200 2.62275 3.06850 3.23792 3.44475 3.48582 3.49816 4.20064 4.28823 4.41531 4.56756 4.68147 4.77230 4.87882 4.92028 5.11382 5.16951 5.27770 5.28876 5.31661 5.46985 5.53139 5.54657 5.66458 5.69283 5.82121 5.87724 5.89648 5.94749 6.04059 6.18784 6.22153 6.29840 6.42707 6.54969 6.77741 6.82100 7.19092 7.37841 7.69084 7.92043 8.03896 8.41274 9.52356 10.09433 10.44024 11.44988 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002362 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.871771 B =11849.659335 C =13106.654668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.124 3.876 3 H 0.119 0.881 4 N -0.709 5.709 5 C 0.591 3.409 6 O -0.533 6.533 7 C -0.235 4.235 8 C -0.164 4.164 9 C -0.041 4.041 10 O -0.174 6.174 11 C 0.025 3.975 12 C 0.514 3.486 13 O -0.543 6.543 14 N -0.710 5.710 15 C 0.145 3.855 16 H 0.090 0.910 17 C -0.160 4.160 18 C -0.135 4.135 19 C 0.154 3.846 20 N -0.734 5.734 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.014 4.014 24 N -0.934 5.934 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.286 1.286 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.407 0.593 33 H 0.161 0.839 34 H 0.210 0.790 35 H 0.213 0.787 36 H 0.405 0.595 37 H 0.057 0.943 38 H 0.067 0.933 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.069 0.931 42 H 0.018 0.982 43 H 0.018 0.982 44 H 0.383 0.617 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.133 -15.437 22.893 28.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.016 3.984 3 H 0.136 0.864 4 N -0.363 5.363 5 C 0.379 3.621 6 O -0.410 6.410 7 C -0.239 4.239 8 C -0.183 4.183 9 C -0.107 4.107 10 O -0.069 6.069 11 C -0.046 4.046 12 C 0.299 3.701 13 O -0.421 6.421 14 N -0.361 5.361 15 C 0.040 3.960 16 H 0.108 0.892 17 C -0.219 4.219 18 C -0.174 4.174 19 C 0.026 3.974 20 N -0.378 5.378 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.210 4.210 24 N -0.583 5.583 25 Si 0.739 3.261 26 H -0.212 1.212 27 H -0.216 1.216 28 H -0.212 1.212 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.243 0.757 33 H 0.178 0.822 34 H 0.226 0.774 35 H 0.229 0.771 36 H 0.240 0.760 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.099 0.901 41 H 0.088 0.912 42 H 0.036 0.964 43 H 0.035 0.965 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -6.608 -15.437 23.137 28.589 hybrid contribution 0.285 0.991 -0.494 1.144 sum -6.323 -14.446 22.643 27.593 Atomic orbital electron populations 1.22136 0.92589 1.03089 1.03925 1.20801 0.95799 0.98469 0.83342 0.86361 1.45548 1.67781 1.14576 1.08379 1.17227 0.77062 0.86062 0.81791 1.90809 1.50123 1.15250 1.84866 1.21471 1.12151 0.94549 0.95769 1.22802 1.03619 1.00989 0.90928 1.23977 1.05572 0.83378 0.97805 1.83806 1.66244 1.36883 1.19959 1.24533 0.97795 0.96763 0.85462 1.20444 0.80120 0.84629 0.84896 1.90675 1.38138 1.26590 1.86658 1.46060 1.53031 1.31828 1.05226 1.21034 0.98664 0.92442 0.83833 0.89237 1.22156 0.99712 0.98132 1.01853 1.22074 1.01116 0.97080 0.97090 1.20636 0.95187 0.89811 0.91781 1.42349 1.47836 1.28413 1.19188 1.19184 1.14208 1.01647 1.02140 0.91298 1.24746 0.99990 0.99532 0.96722 1.69648 1.41616 1.38840 1.08176 0.86256 0.80674 0.82460 0.76745 1.21248 1.21645 1.21221 0.91766 0.90696 0.90584 0.75655 0.82182 0.77390 0.77089 0.76021 0.92412 0.91421 0.92456 0.90117 0.91242 0.96401 0.96450 0.78305 0.93456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.38 37.16 0.35 -0.98 16 2 C 0.12 1.30 2.98 -69.08 -0.21 1.09 16 3 H 0.12 1.37 7.58 -51.93 -0.39 0.98 16 4 N -0.71 -7.24 4.94 -56.02 -0.28 -7.52 16 5 C 0.59 7.04 7.78 -12.54 -0.10 6.95 16 6 O -0.53 -8.18 16.64 5.27 0.09 -8.09 16 7 C -0.23 -2.31 6.31 -103.28 -0.65 -2.96 16 8 C -0.16 -1.43 11.01 -37.45 -0.41 -1.84 16 9 C -0.04 -0.27 12.03 29.30 0.35 0.09 16 10 O -0.17 -1.31 10.52 7.66 0.08 -1.23 16 11 C 0.03 0.18 11.61 30.08 0.35 0.53 16 12 C 0.51 6.13 7.19 -10.99 -0.08 6.05 16 13 O -0.54 -7.81 15.50 5.55 0.09 -7.73 16 14 N -0.71 -8.01 4.42 -53.80 -0.24 -8.25 16 15 C 0.14 1.80 2.57 -67.93 -0.17 1.62 16 16 H 0.09 1.27 7.58 -51.93 -0.39 0.88 16 17 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 18 C -0.14 -1.98 4.87 -26.73 -0.13 -2.11 16 19 C 0.15 3.01 6.15 -4.04 -0.02 2.98 16 20 N -0.73 -18.48 5.60 -59.91 -0.34 -18.81 16 21 C -0.24 -6.80 9.99 -15.06 -0.15 -6.95 16 22 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 24 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 25 Si 0.91 22.62 29.55 -169.99 -5.02 17.60 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.53 7.56 -51.93 -0.39 0.14 16 32 H 0.41 3.53 6.76 -40.82 -0.28 3.25 16 33 H 0.16 1.31 8.06 -52.48 -0.42 0.88 16 34 H 0.21 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.21 0.82 7.47 -52.48 -0.39 0.43 16 36 H 0.40 3.99 8.02 -40.82 -0.33 3.67 16 37 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.07 0.98 8.14 -51.93 -0.42 0.55 16 42 H 0.02 0.35 7.75 -51.93 -0.40 -0.05 16 43 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.38 10.04 7.67 -40.82 -0.31 9.73 16 45 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -36.00 386.21 -6.36 -42.36 By element: Atomic # 1 Polarization: 17.40 SS G_CDS: -6.66 Total: 10.74 kcal Atomic # 6 Polarization: 3.26 SS G_CDS: -0.62 Total: 2.64 kcal Atomic # 7 Polarization: -61.98 SS G_CDS: -0.13 Total: -62.10 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.25 Total: -17.05 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -5.02 Total: 17.60 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.00 -6.36 -42.36 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497192543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.626 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.356 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds