Wall clock time and date at job start Tue Mar 31 2020 14:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.47264 * 2 1 4 4 N 1.46509 * 109.46957 * 119.99723 * 2 1 3 5 5 C 1.34771 * 119.99767 * 275.00226 * 4 2 1 6 6 O 1.21608 * 120.00288 * 359.97438 * 5 4 2 7 7 C 1.47377 * 120.00058 * 180.02562 * 5 4 2 8 8 C 1.47022 * 127.19772 * 179.97438 * 7 5 4 9 9 C 1.34176 * 105.95749 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12236 * 0.02562 * 9 8 7 11 11 C 1.33649 * 110.90867 * 359.76042 * 10 9 8 12 12 C 1.50701 * 109.47346 * 239.99630 * 2 1 3 13 13 O 1.21283 * 120.00052 * 240.00138 * 12 2 1 14 14 N 1.34770 * 119.99922 * 59.99959 * 12 2 1 15 15 C 1.46500 * 120.00256 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46596 * 325.00243 * 15 14 12 17 17 C 1.53006 * 109.47249 * 84.99846 * 15 14 12 18 18 C 1.52997 * 109.47473 * 205.00145 * 15 14 12 19 19 C 1.53001 * 109.47049 * 64.99864 * 18 15 14 20 20 N 1.46496 * 109.46907 * 180.02562 * 19 18 15 21 21 C 1.36940 * 119.99895 * 179.97438 * 20 19 18 22 22 H 1.07998 * 119.99861 * 0.02562 * 21 20 19 23 23 C 1.38814 * 120.00211 * 179.97438 * 21 20 19 24 24 N 1.31621 * 119.99686 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00151 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.46984 * 60.00187 * 25 23 21 27 27 H 1.48501 * 109.46857 * 180.02562 * 25 23 21 28 28 H 1.48506 * 109.46955 * 300.00272 * 25 23 21 29 29 H 1.09006 * 109.47048 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47178 * 300.00334 * 1 2 3 31 31 H 1.09000 * 109.46920 * 60.00565 * 1 2 3 32 32 H 0.97002 * 119.99588 * 94.99976 * 4 2 1 33 33 H 1.08003 * 127.01759 * 359.93676 * 8 7 5 34 34 H 1.08000 * 125.43851 * 179.97438 * 9 8 7 35 35 H 1.08008 * 125.80128 * 180.27143 * 11 10 9 36 36 H 0.97005 * 120.00370 * 0.02562 * 14 12 2 37 37 H 1.09001 * 109.47002 * 60.00085 * 17 15 14 38 38 H 1.08993 * 109.46955 * 180.02562 * 17 15 14 39 39 H 1.09000 * 109.47050 * 300.00351 * 17 15 14 40 40 H 1.08998 * 109.47192 * 185.00019 * 18 15 14 41 41 H 1.08998 * 109.46934 * 304.99865 * 18 15 14 42 42 H 1.08998 * 109.47250 * 300.00119 * 19 18 15 43 43 H 1.08998 * 109.47252 * 60.00195 * 19 18 15 44 44 H 0.97002 * 120.00674 * 0.02562 * 20 19 18 45 45 H 0.97001 * 119.99967 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 2.1469 -0.0182 2.3572 6 8 1.8582 1.1619 2.4116 7 6 2.6387 -0.7127 3.5604 8 6 2.8392 -0.1381 4.8988 9 6 3.2958 -1.1399 5.6657 10 8 3.3895 -2.2542 4.9235 11 6 2.9984 -2.0243 3.6664 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1191 14 7 1.7068 -0.2501 -2.4545 15 6 2.1947 -0.9411 -3.6506 16 1 3.1938 -1.3336 -3.4613 17 6 1.2502 -2.0947 -3.9942 18 6 2.2464 0.0418 -4.8220 19 6 3.2837 1.1282 -4.5308 20 7 3.3327 2.0696 -5.6521 21 6 4.1940 3.1337 -5.6156 22 1 4.8373 3.2785 -4.7603 23 6 4.2409 4.0255 -6.6783 24 7 3.4572 3.8486 -7.7209 25 14 5.4163 5.4765 -6.6288 26 1 6.8111 4.9799 -6.5154 27 1 5.2733 6.2720 -7.8746 28 1 5.0983 6.3313 -5.4568 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 2.2490 -1.6318 1.1527 33 1 2.6568 0.8822 5.2024 34 1 3.5485 -1.0618 6.7128 35 1 2.9730 -2.7527 2.8693 36 1 1.1494 0.5388 -2.5436 37 1 0.2511 -1.7022 -4.1835 38 1 1.6134 -2.6090 -4.8838 39 1 1.2133 -2.7950 -3.1597 40 1 2.5240 -0.4911 -5.7314 41 1 1.2668 0.5009 -4.9545 42 1 3.0061 1.6611 -3.6213 43 1 4.2633 0.6691 -4.3982 44 1 2.7547 1.9398 -6.4202 45 1 3.4902 4.4715 -8.4637 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497192543.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:11 Heat of formation + Delta-G solvation = -80.964328 kcal Electronic energy + Delta-G solvation = -26627.876550 eV Core-core repulsion = 22646.138080 eV Total energy + Delta-G solvation = -3981.738470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.49684 -41.50349 -40.20890 -37.97014 -36.24825 -36.00633 -34.10259 -33.65299 -32.63521 -31.40298 -30.22495 -29.40115 -26.16747 -25.83219 -24.50050 -23.22445 -22.43705 -22.05343 -21.40371 -21.22567 -19.77216 -19.18876 -17.99996 -17.80654 -17.19512 -17.08734 -16.74717 -16.44517 -16.33617 -15.85970 -15.66015 -15.48286 -15.22751 -15.07246 -14.65972 -14.54994 -14.25299 -13.95694 -13.85905 -13.45406 -13.41796 -13.28489 -13.09372 -12.87847 -12.87515 -12.69620 -12.37239 -12.31350 -12.01356 -11.92759 -11.64539 -11.31152 -11.01076 -10.94368 -10.87692 -10.33961 -10.12930 -9.76331 -9.02170 -7.97718 -5.26497 0.30726 1.11183 1.45917 1.46782 1.48403 1.54718 1.66927 2.05173 2.24483 2.35189 2.53947 3.35654 3.46351 3.59402 3.68053 3.76208 3.95943 4.03504 4.08706 4.12598 4.17242 4.38969 4.51998 4.57648 4.62209 4.66168 4.73338 4.77276 4.77659 4.87437 4.99043 5.00918 5.13967 5.19173 5.21843 5.28885 5.31801 5.35473 5.46546 5.52371 5.96792 6.25093 6.37722 6.43834 7.05120 7.09219 7.31700 8.07193 8.30960 9.25176 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013900 B = 0.002362 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.871771 B =11849.659335 C =13106.654668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.126 3.874 3 H 0.105 0.895 4 N -0.701 5.701 5 C 0.590 3.410 6 O -0.578 6.578 7 C -0.271 4.271 8 C -0.197 4.197 9 C -0.022 4.022 10 O -0.176 6.176 11 C 0.045 3.955 12 C 0.518 3.482 13 O -0.567 6.567 14 N -0.705 5.705 15 C 0.153 3.847 16 H 0.072 0.928 17 C -0.152 4.152 18 C -0.120 4.120 19 C 0.152 3.848 20 N -0.745 5.745 21 C -0.250 4.250 22 H 0.069 0.931 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.279 1.279 29 H 0.074 0.926 30 H 0.065 0.935 31 H 0.091 0.909 32 H 0.415 0.585 33 H 0.155 0.845 34 H 0.248 0.752 35 H 0.243 0.757 36 H 0.413 0.587 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.055 0.945 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.022 0.978 43 H 0.006 0.994 44 H 0.376 0.624 45 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.304 -16.732 23.946 30.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.017 3.983 3 H 0.122 0.878 4 N -0.355 5.355 5 C 0.379 3.621 6 O -0.459 6.459 7 C -0.276 4.276 8 C -0.217 4.217 9 C -0.088 4.088 10 O -0.071 6.071 11 C -0.025 4.025 12 C 0.304 3.696 13 O -0.447 6.447 14 N -0.357 5.357 15 C 0.048 3.952 16 H 0.090 0.910 17 C -0.210 4.210 18 C -0.158 4.158 19 C 0.026 3.974 20 N -0.388 5.388 21 C -0.382 4.382 22 H 0.087 0.913 23 C -0.265 4.265 24 N -0.616 5.616 25 Si 0.800 3.200 26 H -0.206 1.206 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.110 0.890 32 H 0.253 0.747 33 H 0.173 0.827 34 H 0.264 0.736 35 H 0.259 0.741 36 H 0.250 0.750 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.039 0.961 43 H 0.024 0.976 44 H 0.208 0.792 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.781 -16.771 24.214 30.225 hybrid contribution 0.370 1.331 -0.762 1.577 sum -6.411 -15.440 23.452 28.801 Atomic orbital electron populations 1.22095 0.90691 1.03910 1.04267 1.20797 0.97219 0.97453 0.82799 0.87763 1.45506 1.67186 1.14854 1.07911 1.17563 0.76313 0.85626 0.82580 1.90773 1.52398 1.17139 1.85609 1.21501 1.14575 0.95978 0.95547 1.22965 1.05697 1.01729 0.91266 1.24639 1.03184 0.82090 0.98850 1.83850 1.65933 1.37228 1.20058 1.25034 0.95392 0.96191 0.85902 1.20598 0.79562 0.84242 0.85231 1.90663 1.39232 1.27766 1.86999 1.46010 1.52840 1.32008 1.04836 1.20875 0.98643 0.92471 0.83225 0.91024 1.22074 0.99760 0.97057 1.02095 1.21915 0.99854 0.95920 0.98093 1.20785 0.96262 0.90175 0.90212 1.42543 1.47181 1.28732 1.20363 1.19545 1.14274 1.02388 1.01971 0.91259 1.25543 1.01964 1.02351 0.96648 1.69789 1.43268 1.39810 1.08743 0.85248 0.78782 0.79295 0.76662 1.20598 1.21778 1.20463 0.90651 0.91615 0.88979 0.74659 0.82682 0.73575 0.74092 0.75040 0.91012 0.90652 0.92592 0.89996 0.90134 0.96052 0.97564 0.79161 0.93860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.38 71.98 0.68 -1.69 16 2 C 0.13 2.59 2.98 44.24 0.13 2.72 16 3 H 0.10 2.48 7.58 -2.39 -0.02 2.46 16 4 N -0.70 -14.14 4.94 -449.42 -2.22 -16.36 16 5 C 0.59 14.39 7.78 86.65 0.67 15.06 16 6 O -0.58 -18.62 16.64 -4.06 -0.07 -18.69 16 7 C -0.27 -5.30 6.31 -18.99 -0.12 -5.42 16 8 C -0.20 -3.41 11.01 23.65 0.26 -3.15 16 9 C -0.02 -0.25 12.03 66.89 0.80 0.56 16 10 O -0.18 -2.25 10.52 4.49 0.05 -2.21 16 11 C 0.05 0.58 11.61 67.39 0.78 1.37 16 12 C 0.52 11.87 7.19 87.66 0.63 12.50 16 13 O -0.57 -15.80 15.50 -3.04 -0.05 -15.84 16 14 N -0.71 -14.97 4.42 -442.53 -1.96 -16.93 16 15 C 0.15 3.57 2.57 44.99 0.12 3.69 16 16 H 0.07 1.98 7.58 -2.39 -0.02 1.96 16 17 C -0.15 -2.82 9.48 71.98 0.68 -2.14 16 18 C -0.12 -3.35 4.87 30.59 0.15 -3.20 16 19 C 0.15 5.90 6.15 86.38 0.53 6.43 16 20 N -0.75 -37.57 5.60 -343.46 -1.92 -39.49 16 21 C -0.25 -14.14 9.99 84.03 0.84 -13.30 16 22 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 23 C -0.07 -4.18 5.50 84.86 0.47 -3.72 16 24 N -0.97 -58.74 13.06 21.65 0.28 -58.46 16 25 Si 0.97 46.51 29.55 68.60 2.03 48.54 16 26 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 27 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 28 H -0.28 -12.90 7.11 99.48 0.71 -12.20 16 29 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 30 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.09 1.13 7.56 -2.39 -0.02 1.11 16 32 H 0.42 6.82 6.76 -92.71 -0.63 6.19 16 33 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 34 H 0.25 0.46 8.06 -2.91 -0.02 0.44 16 35 H 0.24 1.28 7.47 -2.91 -0.02 1.26 16 36 H 0.41 7.49 8.02 -92.70 -0.74 6.74 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.14 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 39 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 40 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 42 H 0.02 0.83 7.75 -2.39 -0.02 0.81 16 43 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.38 19.80 7.67 -92.71 -0.71 19.09 16 45 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 Total: -1.00 -78.21 386.21 1.71 -76.50 By element: Atomic # 1 Polarization: 34.28 SS G_CDS: -1.05 Total: 33.23 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.62 Total: 9.71 kcal Atomic # 7 Polarization: -125.42 SS G_CDS: -5.82 Total: -131.24 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.07 Total: -36.74 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -78.21 1.71 -76.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497192543.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.463 kcal (2) G-P(sol) polarization free energy of solvation -78.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.501 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds