Wall clock time and date at job start Tue Mar 31 2020 14:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42896 * 113.99840 * 2 1 4 4 C 1.53004 * 109.46951 * 179.97438 * 3 2 1 5 5 O 1.42906 * 109.46949 * 64.99990 * 4 3 2 6 6 C 1.35680 * 117.00007 * 180.02562 * 5 4 3 7 7 C 1.38902 * 119.62291 * 179.97438 * 6 5 4 8 8 C 1.39569 * 118.94540 * 179.97438 * 7 6 5 9 9 C 1.48166 * 120.89206 * 179.97438 * 8 7 6 10 10 O 1.21514 * 119.99782 * 0.02562 * 9 8 7 11 11 N 1.34773 * 119.99757 * 180.02562 * 9 8 7 12 12 C 1.46509 * 119.99763 * 179.97438 * 11 9 8 13 13 H 1.09003 * 109.46689 * 34.99601 * 12 11 9 14 14 C 1.53004 * 109.47115 * 275.00185 * 12 11 9 15 15 C 1.52994 * 109.46993 * 154.99869 * 12 11 9 16 16 N 1.46499 * 109.47539 * 304.99830 * 15 12 11 17 17 C 1.36932 * 120.00089 * 180.02562 * 16 15 12 18 18 H 1.07992 * 120.00357 * 359.97438 * 17 16 15 19 19 C 1.38814 * 119.99676 * 180.02562 * 17 16 15 20 20 N 1.31626 * 120.00086 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00271 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47501 * 89.99921 * 21 19 17 23 23 H 1.48503 * 109.46997 * 210.00065 * 21 19 17 24 24 H 1.48501 * 109.46821 * 329.99651 * 21 19 17 25 25 C 1.39965 * 118.21845 * 0.02562 * 8 7 6 26 26 C 1.37975 * 119.13456 * 359.97438 * 25 8 7 27 27 N 1.31905 * 120.97919 * 0.02562 * 26 25 8 28 28 H 1.08998 * 109.46699 * 60.00100 * 1 2 3 29 29 H 1.08993 * 109.47085 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46786 * 300.00482 * 1 2 3 31 31 H 1.08996 * 109.47498 * 60.00321 * 3 2 1 32 32 H 1.09004 * 109.47263 * 299.99553 * 3 2 1 33 33 H 1.08991 * 109.47194 * 305.00206 * 4 3 2 34 34 H 1.08997 * 109.47240 * 184.99655 * 4 3 2 35 35 H 1.07999 * 120.52488 * 0.02562 * 7 6 5 36 36 H 0.96993 * 120.00717 * 359.97438 * 11 9 8 37 37 H 1.08996 * 109.47089 * 59.99528 * 14 12 11 38 38 H 1.08995 * 109.46778 * 179.97438 * 14 12 11 39 39 H 1.09002 * 109.46749 * 299.99847 * 14 12 11 40 40 H 1.08999 * 109.47451 * 65.00305 * 15 12 11 41 41 H 1.09012 * 109.46716 * 185.00135 * 15 12 11 42 42 H 0.97004 * 119.99728 * 359.97438 * 16 15 12 43 43 H 0.96996 * 120.00141 * 179.97438 * 20 19 17 44 44 H 1.08001 * 120.43704 * 179.72644 * 25 8 7 45 45 H 1.08004 * 119.51469 * 179.97438 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 8 3.9659 0.5792 -1.2202 6 6 5.3009 0.3975 -1.3805 7 6 5.7791 -0.1867 -2.5464 8 6 7.1550 -0.3663 -2.6968 9 6 7.7120 -0.9853 -3.9223 10 8 6.9681 -1.3439 -4.8137 11 7 9.0436 -1.1506 -4.0483 12 6 9.5942 -1.7632 -5.2599 13 1 8.9954 -1.4669 -6.1212 14 6 9.5663 -3.2865 -5.1191 15 6 11.0376 -1.2955 -5.4570 16 7 11.0787 0.1688 -5.4724 17 6 12.2727 0.8185 -5.6378 18 1 13.1841 0.2515 -5.7564 19 6 12.3117 2.2060 -5.6518 20 7 13.4594 2.8306 -5.8103 21 14 10.7356 3.1869 -5.4445 22 1 10.5058 3.4556 -4.0022 23 1 10.8540 4.4743 -6.1751 24 1 9.5939 2.4105 -5.9914 25 6 7.9946 0.0530 -1.6583 26 6 7.4371 0.6245 -0.5330 27 7 6.1315 0.7785 -0.4255 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.6887 1.8464 0.8900 32 1 1.6887 1.8464 -0.8900 33 1 3.8508 0.5685 0.8426 34 1 3.9785 2.1765 0.0901 35 1 5.0972 -0.4962 -3.3246 36 1 9.6374 -0.8640 -3.3370 37 1 8.5381 -3.6196 -4.9786 38 1 9.9756 -3.7422 -6.0207 39 1 10.1651 -3.5827 -4.2578 40 1 11.6550 -1.6678 -4.6395 41 1 11.4179 -1.6797 -6.4037 42 1 10.2600 0.6781 -5.3662 43 1 13.4866 3.8001 -5.8205 44 1 9.0645 -0.0728 -1.7351 45 1 8.0792 0.9499 0.2722 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497816220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:25 Heat of formation + Delta-G solvation = -64.446183 kcal Electronic energy + Delta-G solvation = -26778.707439 eV Core-core repulsion = 22797.685249 eV Total energy + Delta-G solvation = -3981.022190 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.00708 -39.69050 -38.55821 -37.54781 -36.42098 -33.87640 -32.95266 -31.84179 -31.27792 -30.30874 -29.77923 -26.76166 -26.06623 -25.14916 -23.53177 -23.11731 -22.22843 -21.18585 -20.44802 -18.98625 -17.73116 -17.53054 -17.23103 -16.57771 -16.16321 -16.01875 -15.79308 -15.63829 -15.21887 -15.00563 -14.67027 -14.43946 -14.08418 -13.91574 -13.76144 -13.47712 -12.91425 -12.79270 -12.69591 -12.43800 -12.34862 -12.20158 -11.95528 -11.91374 -11.75724 -11.23603 -11.16594 -10.93395 -10.56556 -10.31114 -10.19601 -10.13358 -10.08367 -9.74835 -9.66385 -9.02761 -8.94591 -8.73472 -7.32683 -5.83421 -3.20075 0.55664 0.95482 2.61075 2.85308 3.20331 3.31664 3.32263 3.38245 3.41798 3.69053 4.04639 4.46623 4.52670 4.53319 4.69068 4.76292 4.81290 4.85254 4.91781 4.95652 5.00547 5.07059 5.11900 5.27402 5.29188 5.34821 5.42763 5.49668 5.52269 5.62100 5.76462 5.85653 5.87913 5.97714 6.09065 6.24838 6.29232 6.51492 6.67979 6.70989 6.99861 7.53672 7.57872 7.91343 8.18886 8.35161 9.13361 9.85668 10.04649 11.34566 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015213 B = 0.002779 C = 0.002511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1840.130704 B =10074.341586 C =11147.958607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.060 3.940 4 C 0.073 3.927 5 O -0.296 6.296 6 C 0.319 3.681 7 C -0.132 4.132 8 C -0.050 4.050 9 C 0.557 3.443 10 O -0.531 6.531 11 N -0.704 5.704 12 C 0.129 3.871 13 H 0.090 0.910 14 C -0.158 4.158 15 C 0.148 3.852 16 N -0.756 5.756 17 C -0.247 4.247 18 H 0.092 0.908 19 C 0.008 3.992 20 N -0.931 5.931 21 Si 0.880 3.120 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.277 1.277 25 C -0.179 4.179 26 C 0.139 3.861 27 N -0.530 5.530 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.076 0.924 34 H 0.084 0.916 35 H 0.154 0.846 36 H 0.405 0.595 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.058 0.942 40 H 0.035 0.965 41 H 0.045 0.955 42 H 0.362 0.638 43 H 0.260 0.740 44 H 0.146 0.854 45 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.863 -6.722 14.337 26.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C -0.017 4.017 4 C -0.002 4.002 5 O -0.203 6.203 6 C 0.140 3.860 7 C -0.154 4.154 8 C -0.061 4.061 9 C 0.343 3.657 10 O -0.408 6.408 11 N -0.356 5.356 12 C 0.025 3.975 13 H 0.108 0.892 14 C -0.216 4.216 15 C 0.021 3.979 16 N -0.402 5.402 17 C -0.377 4.377 18 H 0.109 0.891 19 C -0.188 4.188 20 N -0.579 5.579 21 Si 0.710 3.290 22 H -0.210 1.210 23 H -0.216 1.216 24 H -0.204 1.204 25 C -0.200 4.200 26 C -0.016 4.016 27 N -0.254 5.254 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.059 0.941 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.172 0.828 36 H 0.241 0.759 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.195 0.805 43 H 0.070 0.930 44 H 0.163 0.837 45 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -21.587 -6.801 14.203 26.721 hybrid contribution -0.504 1.067 -0.052 1.181 sum -22.091 -5.734 14.150 26.854 Atomic orbital electron populations 1.22765 0.80801 1.03026 0.99980 1.87975 1.19865 1.27167 1.95420 1.22654 0.91758 0.85762 1.01485 1.22675 0.92586 0.98991 0.85959 1.86301 1.17474 1.76453 1.40055 1.19619 0.84169 0.92128 0.90086 1.21102 0.95061 1.01578 0.97633 1.20194 0.93297 0.97772 0.94792 1.18062 0.82809 0.78865 0.86006 1.90769 1.58750 1.50312 1.40995 1.45980 1.06319 1.61594 1.21720 1.21407 0.96210 0.92676 0.87251 0.89184 1.22093 1.02210 0.94867 1.02465 1.20983 0.91457 0.85691 0.99792 1.42722 1.07025 1.00691 1.89766 1.19036 0.86275 0.89922 1.42477 0.89052 1.24660 0.96192 0.96224 1.01750 1.69695 1.23501 1.08101 1.56555 0.86624 0.84173 0.80261 0.77968 1.20952 1.21580 1.20367 1.22256 1.01479 1.01650 0.94582 1.22376 0.89277 0.93334 0.96652 1.67196 1.05868 1.21813 1.30555 0.93870 0.89452 0.94069 0.90944 0.92052 0.90539 0.89840 0.82839 0.75851 0.92281 0.91243 0.92271 0.94730 0.93765 0.80454 0.92974 0.83655 0.81517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.83 10.67 -40.08 -0.43 -4.26 16 3 C 0.06 0.47 6.32 37.16 0.23 0.70 16 4 C 0.07 0.70 5.69 37.16 0.21 0.91 16 5 O -0.30 -3.75 10.08 -23.60 -0.24 -3.99 16 6 C 0.32 4.26 7.49 -17.16 -0.13 4.13 16 7 C -0.13 -1.84 9.61 -38.84 -0.37 -2.22 16 8 C -0.05 -0.69 5.91 -104.68 -0.62 -1.31 16 9 C 0.56 8.80 7.76 -12.18 -0.09 8.70 16 10 O -0.53 -9.86 16.10 5.35 0.09 -9.77 16 11 N -0.70 -10.36 4.48 -54.64 -0.24 -10.60 16 12 C 0.13 1.97 2.73 -67.93 -0.19 1.79 16 13 H 0.09 1.55 7.58 -51.93 -0.39 1.16 16 14 C -0.16 -1.96 9.48 37.16 0.35 -1.61 16 15 C 0.15 2.64 5.82 -4.05 -0.02 2.62 16 16 N -0.76 -17.16 5.24 -59.91 -0.31 -17.47 16 17 C -0.25 -6.77 10.47 -15.06 -0.16 -6.93 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.24 16 19 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 20 N -0.93 -28.74 13.97 55.49 0.78 -27.96 16 21 Si 0.88 22.01 27.74 -169.99 -4.71 17.30 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 23 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 24 H -0.28 -6.77 6.52 56.52 0.37 -6.41 16 25 C -0.18 -2.08 9.61 -39.03 -0.38 -2.46 16 26 C 0.14 1.51 11.17 -17.62 -0.20 1.31 16 27 N -0.53 -6.57 9.18 -13.38 -0.12 -6.70 16 28 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 34 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 35 H 0.15 2.15 7.74 -52.49 -0.41 1.74 16 36 H 0.41 5.37 6.74 -40.82 -0.28 5.09 16 37 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.04 0.80 8.14 -51.92 -0.42 0.37 16 42 H 0.36 8.29 5.20 -40.82 -0.21 8.08 16 43 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 44 H 0.15 1.42 6.53 -52.49 -0.34 1.07 16 45 H 0.17 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 382.59 15.07 5.77 5.77 Total: -1.00 -34.74 382.59 -6.49 -41.22 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.71 Total: 9.40 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -0.34 Total: 7.07 kcal Atomic # 7 Polarization: -62.83 SS G_CDS: 0.09 Total: -62.73 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: -0.58 Total: -18.02 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.71 Total: 17.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.74 -6.49 -41.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497816220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.225 kcal (2) G-P(sol) polarization free energy of solvation -34.736 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds