Wall clock time and date at job start Tue Mar 31 2020 14:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35673 * 116.99877 * 2 1 4 4 C 1.38922 * 119.68072 * 179.97438 * 3 2 1 5 5 C 1.38385 * 119.10926 * 180.02562 * 4 3 2 6 6 C 1.38824 * 118.48587 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.35477 * 180.02562 * 6 5 4 8 8 O 1.42898 * 109.46876 * 90.00211 * 7 6 5 9 9 C 1.42895 * 114.00080 * 180.02562 * 8 7 6 10 10 C 1.50698 * 109.47513 * 179.97438 * 9 8 7 11 11 O 1.21287 * 120.00091 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00223 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99760 * 180.02562 * 12 10 9 14 14 H 1.09000 * 109.47245 * 325.00072 * 13 12 10 15 15 C 1.53005 * 109.47277 * 84.99974 * 13 12 10 16 16 C 1.52998 * 109.47046 * 204.99876 * 13 12 10 17 17 N 1.46499 * 109.47434 * 55.00038 * 16 13 12 18 18 C 1.36928 * 120.00629 * 180.02562 * 17 16 13 19 19 H 1.08002 * 119.99662 * 359.97438 * 18 17 16 20 20 C 1.38813 * 120.00529 * 180.02562 * 18 17 16 21 21 N 1.31620 * 119.99939 * 359.97438 * 20 18 17 22 22 Si 1.86798 * 120.00411 * 179.97438 * 20 18 17 23 23 H 1.48505 * 109.47223 * 89.99312 * 22 20 18 24 24 H 1.48496 * 109.47410 * 209.99679 * 22 20 18 25 25 H 1.48504 * 109.47125 * 329.99720 * 22 20 18 26 26 C 1.38046 * 119.29263 * 0.02562 * 6 5 4 27 27 N 1.31967 * 120.83264 * 0.02562 * 26 6 5 28 28 H 1.08998 * 109.46923 * 300.00138 * 1 2 3 29 29 H 1.09006 * 109.46668 * 59.99889 * 1 2 3 30 30 H 1.08993 * 109.47543 * 179.97438 * 1 2 3 31 31 H 1.07997 * 120.44530 * 0.27676 * 4 3 2 32 32 H 1.08003 * 120.75576 * 180.02562 * 5 4 3 33 33 H 1.08997 * 109.47154 * 209.99640 * 7 6 5 34 34 H 1.08996 * 109.47157 * 330.00474 * 7 6 5 35 35 H 1.08998 * 109.47310 * 299.99749 * 9 8 7 36 36 H 1.09004 * 109.47391 * 60.00019 * 9 8 7 37 37 H 0.96993 * 120.00026 * 0.02562 * 12 10 9 38 38 H 1.08993 * 109.46796 * 299.99488 * 15 13 12 39 39 H 1.09000 * 109.46904 * 59.99889 * 15 13 12 40 40 H 1.08999 * 109.47142 * 179.97438 * 15 13 12 41 41 H 1.08999 * 109.47679 * 174.99923 * 16 13 12 42 42 H 1.09001 * 109.46997 * 295.00320 * 16 13 12 43 43 H 0.97002 * 119.99254 * 0.02562 * 17 16 13 44 44 H 0.96993 * 120.00586 * 180.02562 * 21 20 18 45 45 H 1.07994 * 119.58392 * 179.97438 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4327 1.2739 0.0005 5 6 4.0486 2.5131 0.0011 6 6 3.2506 3.6491 0.0016 7 6 3.8769 5.0198 0.0016 8 8 4.0743 5.4532 -1.3457 9 6 4.6668 6.7486 -1.4586 10 6 4.8283 7.1021 -2.9146 11 8 4.4715 6.3213 -3.7714 12 7 5.3701 8.2855 -3.2647 13 6 5.5264 8.6293 -4.6802 14 1 5.7622 7.7297 -5.2487 15 6 4.2238 9.2370 -5.2044 16 6 6.6614 9.6434 -4.8364 17 7 7.8815 9.1085 -4.2269 18 6 9.0354 9.8455 -4.2444 19 1 9.0462 10.8209 -4.7079 20 6 10.1917 9.3385 -3.6674 21 7 10.1787 8.1495 -3.1030 22 14 11.7660 10.3435 -3.6919 23 1 11.8293 11.1940 -2.4762 24 1 12.9363 9.4298 -3.7183 25 1 11.7840 11.2059 -4.9007 26 6 1.8772 3.5097 0.0021 27 7 1.3187 2.3141 0.0026 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 4.0229 0.3694 -0.0035 32 1 5.1255 2.5946 0.0011 33 1 3.2187 5.7201 0.5158 34 1 4.8376 4.9803 0.5150 35 1 4.0254 7.4851 -0.9746 36 1 5.6440 6.7446 -0.9756 37 1 5.6564 8.9095 -2.5796 38 1 3.4153 8.5145 -5.0932 39 1 3.9880 10.1366 -4.6359 40 1 4.3403 9.4932 -6.2574 41 1 6.8369 9.8321 -5.8954 42 1 6.3866 10.5751 -4.3419 43 1 7.8719 8.2323 -3.8110 44 1 10.9865 7.7953 -2.6995 45 1 1.2519 4.3902 0.0029 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498060842.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:30 Heat of formation + Delta-G solvation = -95.131668 kcal Electronic energy + Delta-G solvation = -26181.202888 eV Core-core repulsion = 22198.850076 eV Total energy + Delta-G solvation = -3982.352812 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67922 -40.86836 -39.31276 -38.38860 -37.48322 -35.43014 -33.80886 -33.15617 -32.59306 -31.67405 -29.06677 -28.22202 -27.39704 -26.44454 -24.51796 -24.47845 -22.96563 -22.45345 -21.42495 -19.44116 -19.24631 -18.35996 -18.23268 -17.81538 -17.11411 -17.01655 -16.77405 -16.69565 -16.35843 -15.62967 -15.51637 -15.34570 -15.25412 -14.97994 -14.96209 -14.37666 -14.15551 -13.94188 -13.63960 -13.59598 -13.49766 -13.08444 -12.99756 -12.81792 -12.76429 -12.61705 -12.42913 -12.13946 -12.12818 -11.88503 -11.69413 -10.99711 -10.95055 -10.81195 -10.76176 -10.58462 -10.03071 -9.52147 -8.99907 -7.93290 -5.22695 0.02839 0.20715 1.49810 1.51147 1.59383 1.65043 1.92652 2.10101 2.57094 2.64866 3.20029 3.30943 3.41146 3.71130 3.86077 3.89996 3.94717 3.97471 4.07547 4.18013 4.27700 4.31651 4.37120 4.40642 4.43032 4.51895 4.52706 4.54344 4.72963 4.76348 4.81827 4.88884 4.89729 4.96075 5.13973 5.25783 5.32316 5.40570 5.52374 5.59628 6.06907 6.17244 6.27693 6.63619 6.75719 7.30699 7.35055 8.08542 8.32418 9.29747 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002114 C = 0.001954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.486507 B =13239.972869 C =14326.485989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.321 6.321 3 C 0.304 3.696 4 C -0.199 4.199 5 C -0.024 4.024 6 C -0.186 4.186 7 C 0.108 3.892 8 O -0.391 6.391 9 C 0.049 3.951 10 C 0.508 3.492 11 O -0.579 6.579 12 N -0.704 5.704 13 C 0.141 3.859 14 H 0.054 0.946 15 C -0.146 4.146 16 C 0.146 3.854 17 N -0.744 5.744 18 C -0.244 4.244 19 H 0.079 0.921 20 C -0.075 4.075 21 N -0.968 5.968 22 Si 0.973 3.027 23 H -0.284 1.284 24 H -0.300 1.300 25 H -0.271 1.271 26 C 0.153 3.847 27 N -0.558 5.558 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.123 0.877 31 H 0.158 0.842 32 H 0.161 0.839 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.119 0.881 36 H 0.097 0.903 37 H 0.413 0.587 38 H 0.049 0.951 39 H 0.077 0.923 40 H 0.078 0.922 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.374 0.626 44 H 0.250 0.750 45 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.256 -7.320 10.578 23.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.228 6.228 3 C 0.125 3.875 4 C -0.220 4.220 5 C -0.049 4.049 6 C -0.188 4.188 7 C 0.032 3.968 8 O -0.311 6.311 9 C -0.030 4.030 10 C 0.295 3.705 11 O -0.458 6.458 12 N -0.357 5.357 13 C 0.036 3.964 14 H 0.072 0.928 15 C -0.204 4.204 16 C 0.019 3.981 17 N -0.387 5.387 18 C -0.375 4.375 19 H 0.097 0.903 20 C -0.267 4.267 21 N -0.618 5.618 22 Si 0.803 3.197 23 H -0.211 1.211 24 H -0.227 1.227 25 H -0.196 1.196 26 C -0.002 4.002 27 N -0.282 5.282 28 H 0.078 0.922 29 H 0.071 0.929 30 H 0.141 0.859 31 H 0.176 0.824 32 H 0.178 0.822 33 H 0.109 0.891 34 H 0.097 0.903 35 H 0.137 0.863 36 H 0.115 0.885 37 H 0.249 0.751 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.097 0.903 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.206 0.794 44 H 0.059 0.941 45 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -20.286 -8.193 9.752 23.953 hybrid contribution 1.931 0.397 0.409 2.013 sum -18.355 -7.796 10.161 22.381 Atomic orbital electron populations 1.23058 0.75838 1.04684 1.02211 1.86223 1.24428 1.24426 1.87717 1.20198 0.90161 0.85000 0.92124 1.21323 0.91854 1.00458 1.08343 1.21694 1.01790 0.90569 0.90840 1.20617 0.94933 0.96050 1.07203 1.21382 1.00911 0.91517 0.83012 1.88041 1.82489 1.32966 1.27580 1.22276 1.01203 0.87125 0.92387 1.20902 0.76718 0.81053 0.91810 1.90680 1.51128 1.50540 1.53498 1.45824 1.62212 1.18796 1.08835 1.21072 0.95889 0.97646 0.81809 0.92752 1.21999 0.95139 1.01031 1.02268 1.21136 0.84927 0.95066 0.96973 1.42538 1.06722 1.20394 1.69040 1.19640 0.88758 0.99546 1.29594 0.90261 1.25552 1.01231 0.98111 1.01799 1.69819 1.28477 1.18956 1.44596 0.85145 0.79179 0.77415 0.78004 1.21114 1.22737 1.19604 1.22696 0.92657 0.93948 0.90915 1.67360 1.41298 0.99195 1.20369 0.92236 0.92878 0.85874 0.82403 0.82187 0.89117 0.90337 0.86350 0.88509 0.75089 0.93190 0.90448 0.90327 0.94593 0.93707 0.79370 0.94097 0.80284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.55 10.38 113.37 1.18 1.73 16 2 O -0.32 -6.87 10.48 -89.90 -0.94 -7.82 16 3 C 0.30 7.06 7.49 84.79 0.63 7.70 16 4 C -0.20 -4.09 10.04 22.47 0.23 -3.87 16 5 C -0.02 -0.47 9.85 22.45 0.22 -0.25 16 6 C -0.19 -3.74 5.53 -19.77 -0.11 -3.84 16 7 C 0.11 1.88 6.08 71.24 0.43 2.32 16 8 O -0.39 -10.36 9.86 -129.95 -1.28 -11.64 16 9 C 0.05 1.13 6.42 71.24 0.46 1.59 16 10 C 0.51 16.50 7.87 87.66 0.69 17.19 16 11 O -0.58 -24.39 16.16 15.98 0.26 -24.13 16 12 N -0.70 -21.24 4.52 -442.52 -2.00 -23.24 16 13 C 0.14 4.60 2.73 44.99 0.12 4.73 16 14 H 0.05 2.14 7.58 -2.39 -0.02 2.12 16 15 C -0.15 -3.70 9.48 71.98 0.68 -3.02 16 16 C 0.15 5.34 5.82 86.38 0.50 5.85 16 17 N -0.74 -35.83 5.43 -343.46 -1.87 -37.70 16 18 C -0.24 -12.99 9.99 84.04 0.84 -12.15 16 19 H 0.08 4.02 7.83 -2.91 -0.02 3.99 16 20 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 21 N -0.97 -57.73 13.06 21.65 0.28 -57.45 16 22 Si 0.97 44.79 29.55 68.60 2.03 46.81 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.14 16 26 C 0.15 3.14 10.85 84.63 0.92 4.06 16 27 N -0.56 -13.08 9.22 -308.95 -2.85 -15.92 16 28 H 0.06 0.87 8.10 -2.39 -0.02 0.85 16 29 H 0.05 0.86 8.11 -2.38 -0.02 0.84 16 30 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.16 2.60 8.06 -2.91 -0.02 2.57 16 32 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 33 H 0.09 1.04 8.09 -2.39 -0.02 1.02 16 34 H 0.08 1.13 8.09 -2.39 -0.02 1.11 16 35 H 0.12 1.74 8.14 -2.39 -0.02 1.72 16 36 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 37 H 0.41 10.95 8.60 -92.71 -0.80 10.16 16 38 H 0.05 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 41 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 43 H 0.37 19.62 7.33 -92.71 -0.68 18.94 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.18 2.72 8.06 -2.91 -0.02 2.70 16 Total: -1.00 -76.82 388.99 0.42 -76.40 By element: Atomic # 1 Polarization: 36.81 SS G_CDS: -0.47 Total: 36.34 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 7.26 Total: 18.35 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -6.43 Total: -134.31 kcal Atomic # 8 Polarization: -41.63 SS G_CDS: -1.96 Total: -43.59 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -76.82 0.42 -76.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498060842.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.732 kcal (2) G-P(sol) polarization free energy of solvation -76.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds