Wall clock time and date at job start Tue Mar 31 2020 14:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 C 1.52997 * 109.46977 * 120.00669 * 2 1 3 5 5 N 1.46503 * 109.46962 * 174.99636 * 4 2 1 6 6 C 1.36934 * 119.99920 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38820 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99862 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47204 * 90.00204 * 10 8 6 12 12 H 1.48500 * 109.46895 * 209.99811 * 10 8 6 13 13 H 1.48496 * 109.47474 * 329.99771 * 10 8 6 14 14 N 1.46505 * 109.46984 * 240.00726 * 2 1 3 15 15 C 1.34774 * 120.00343 * 85.00017 * 14 2 1 16 16 O 1.21614 * 119.99595 * 359.97438 * 15 14 2 17 17 C 1.47416 * 120.00042 * 180.02562 * 15 14 2 18 18 C 1.36091 * 126.44912 * 179.97438 * 17 15 14 19 19 O 1.34256 * 106.94932 * 180.02562 * 18 17 15 20 20 C 1.34047 * 108.22674 * 0.02562 * 19 18 17 21 21 C 1.50710 * 125.37563 * 180.26840 * 20 19 18 22 22 C 1.53174 * 109.54262 * 59.24707 * 21 20 19 23 23 C 1.53100 * 109.15810 * 183.15377 * 22 21 20 24 24 O 1.42902 * 109.41557 * 57.60676 * 23 22 21 25 25 C 1.42902 * 114.09871 * 298.84282 * 24 23 22 26 26 C 1.53093 * 109.41665 * 61.15719 * 25 24 23 27 27 N 1.29934 * 109.24538 * 359.97438 * 20 19 18 28 28 H 1.08993 * 109.47486 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46820 * 300.00044 * 1 2 3 30 30 H 1.09006 * 109.46879 * 59.99302 * 1 2 3 31 31 H 1.08997 * 109.47014 * 294.99250 * 4 2 1 32 32 H 1.08992 * 109.47277 * 55.00170 * 4 2 1 33 33 H 0.97001 * 120.00135 * 359.97438 * 5 4 2 34 34 H 0.97001 * 120.00036 * 180.02562 * 9 8 6 35 35 H 0.97008 * 119.99537 * 265.00465 * 14 2 1 36 36 H 1.07993 * 126.52411 * 359.97438 * 18 17 15 37 37 H 1.08999 * 109.53891 * 179.51292 * 21 20 19 38 38 H 1.08997 * 109.51975 * 303.05335 * 22 21 20 39 39 H 1.08994 * 109.52475 * 63.24728 * 22 21 20 40 40 H 1.09001 * 109.48231 * 297.62309 * 23 22 21 41 41 H 1.08995 * 109.47901 * 177.59201 * 23 22 21 42 42 H 1.09001 * 109.47984 * 301.17437 * 25 24 23 43 43 H 1.09001 * 109.47814 * 181.14316 * 25 24 23 44 44 H 1.08995 * 109.52051 * 182.48950 * 26 25 24 45 45 H 1.09004 * 109.57131 * 62.33047 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8266 1.1904 6 6 4.1838 -1.4382 2.2070 7 1 3.6468 -1.8435 3.0519 8 6 5.5674 -1.5375 2.1516 9 7 6.2218 -1.0441 1.1218 10 14 6.5001 -2.3725 3.5380 11 1 6.6327 -3.8218 3.2428 12 1 7.8504 -1.7669 3.6612 13 1 5.7588 -2.1926 4.8120 14 7 2.0183 -0.6905 -1.1963 15 6 2.1471 -0.0181 -2.3572 16 8 1.8574 1.1618 -2.4118 17 6 2.6379 -0.7131 -3.5611 18 6 2.8169 -0.1657 -4.7941 19 8 3.2747 -1.1426 -5.5933 20 6 3.3743 -2.2655 -4.8679 21 6 3.8555 -3.5974 -5.3835 22 6 5.2827 -3.4535 -5.9207 23 6 5.7337 -4.7912 -6.5134 24 8 4.8223 -5.1871 -7.5404 25 6 3.4814 -5.3829 -7.0868 26 6 2.9399 -4.0691 -6.5172 27 7 2.9963 -2.0227 -3.6487 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.7517 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2949 33 1 3.9824 -0.4630 0.4314 34 1 7.1886 -1.1137 1.0829 35 1 2.2490 -1.6318 -1.1528 36 1 2.6262 0.8591 -5.0763 37 1 3.8408 -4.3282 -4.5749 38 1 5.3049 -2.6863 -6.6947 39 1 5.9514 -3.1714 -5.1076 40 1 5.7500 -5.5488 -5.7299 41 1 6.7327 -4.6832 -6.9357 42 1 3.4682 -6.1483 -6.3108 43 1 2.8579 -5.7013 -7.9223 44 1 1.9332 -4.2273 -6.1305 45 1 2.9139 -3.3138 -7.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001498156651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:28 Heat of formation + Delta-G solvation = -59.212149 kcal Electronic energy + Delta-G solvation = -27407.285210 eV Core-core repulsion = 23426.489985 eV Total energy + Delta-G solvation = -3980.795225 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.49746 -39.64786 -39.32373 -36.17476 -35.08851 -34.55977 -33.60058 -31.50521 -31.30348 -30.19930 -29.67686 -25.87096 -25.69497 -24.32230 -23.95516 -22.59866 -21.86952 -21.28139 -20.25117 -19.87324 -18.15896 -17.10163 -16.88969 -16.62746 -16.38977 -16.26057 -15.81017 -15.15208 -15.07992 -14.78901 -14.54266 -14.18871 -14.11305 -13.66830 -13.54574 -13.31981 -13.22298 -12.77939 -12.35328 -12.21837 -12.13771 -11.80605 -11.72767 -11.62720 -11.49643 -11.07481 -10.89430 -10.83248 -10.81279 -10.73015 -10.45594 -10.06441 -10.00408 -9.88236 -9.73146 -9.07399 -8.90645 -8.66998 -6.94518 -5.76192 -3.06102 1.11787 2.01842 2.47472 3.31139 3.42996 3.47978 3.49892 3.50962 3.53660 3.71482 4.31538 4.34780 4.57437 4.58299 4.64492 4.83243 4.85388 4.94283 5.06157 5.16419 5.28016 5.30032 5.33699 5.42132 5.48699 5.50480 5.55835 5.59318 5.62968 5.66515 5.69517 5.88585 5.99026 6.03942 6.11132 6.19873 6.40445 6.48118 6.69962 6.82772 6.92234 7.43187 7.68944 7.90031 8.40968 8.46206 9.52896 10.09185 10.44522 11.46089 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.003491 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.881779 B = 8018.902485 C =10055.173525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.132 3.868 3 H 0.089 0.911 4 C 0.144 3.856 5 N -0.731 5.731 6 C -0.242 4.242 7 H 0.071 0.929 8 C -0.012 4.012 9 N -0.930 5.930 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.282 1.282 14 N -0.690 5.690 15 C 0.601 3.399 16 O -0.547 6.547 17 C -0.061 4.061 18 C 0.005 3.995 19 O -0.195 6.195 20 C 0.199 3.801 21 C 0.009 3.991 22 C -0.155 4.155 23 C 0.063 3.937 24 O -0.383 6.383 25 C 0.063 3.937 26 C -0.153 4.153 27 N -0.447 5.447 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.057 0.943 31 H 0.035 0.965 32 H 0.025 0.975 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.413 0.587 36 H 0.230 0.770 37 H 0.117 0.883 38 H 0.080 0.920 39 H 0.086 0.914 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.056 0.944 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 -6.049 -18.106 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.027 3.973 3 H 0.107 0.893 4 C 0.016 3.984 5 N -0.376 5.376 6 C -0.374 4.374 7 H 0.089 0.911 8 C -0.208 4.208 9 N -0.578 5.578 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.218 1.218 13 H -0.207 1.207 14 N -0.339 5.339 15 C 0.386 3.614 16 O -0.426 6.426 17 C -0.182 4.182 18 C -0.068 4.068 19 O -0.081 6.081 20 C -0.010 4.010 21 C -0.010 4.010 22 C -0.193 4.193 23 C -0.014 4.014 24 O -0.301 6.301 25 C -0.014 4.014 26 C -0.191 4.191 27 N -0.177 5.177 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.043 0.957 33 H 0.220 0.780 34 H 0.064 0.936 35 H 0.249 0.751 36 H 0.246 0.754 37 H 0.135 0.865 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.076 0.924 41 H 0.119 0.881 42 H 0.075 0.925 43 H 0.117 0.883 44 H 0.101 0.899 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -8.071 -5.765 -17.650 20.246 hybrid contribution 0.803 -0.022 0.479 0.935 sum -7.269 -5.788 -17.171 19.524 Atomic orbital electron populations 1.22103 0.95306 1.01981 1.02207 1.21331 0.93496 0.98053 0.84390 0.89322 1.20985 0.86943 0.97020 0.93423 1.42357 0.99696 1.70310 1.25273 1.19217 0.89429 1.29558 0.99152 0.91123 1.24751 0.96437 1.01543 0.98057 1.69679 1.07177 1.50736 1.30247 0.86187 0.79392 0.79000 0.81573 1.21729 1.21804 1.20749 1.45815 1.64662 1.14921 1.08542 1.16712 0.77392 0.85453 0.81809 1.90787 1.52035 1.14785 1.84964 1.21882 1.09201 0.90891 0.96194 1.25256 0.98571 0.94125 0.88886 1.84340 1.64045 1.18529 1.41187 1.26039 1.00448 0.89224 0.85328 1.19807 0.95365 0.86910 0.98903 1.22330 0.94961 0.99862 1.02157 1.22601 0.93500 0.94172 0.91112 1.87954 1.18501 1.88669 1.34997 1.22579 0.83557 0.95198 1.00062 1.22317 0.99498 0.99434 0.97848 1.70826 1.14259 1.14444 1.18131 0.92497 0.91461 0.92421 0.94700 0.95726 0.77992 0.93552 0.75089 0.75371 0.86467 0.90087 0.89498 0.92423 0.88125 0.92534 0.88292 0.89943 0.90107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 9.48 37.16 0.35 -1.87 16 2 C 0.13 2.32 2.73 -67.93 -0.19 2.14 16 3 H 0.09 1.72 7.58 -51.93 -0.39 1.33 16 4 C 0.14 2.90 5.82 -4.04 -0.02 2.87 16 5 N -0.73 -18.70 5.43 -59.91 -0.33 -19.02 16 6 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 7 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 8 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 9 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 10 Si 0.91 22.48 29.55 -169.99 -5.02 17.45 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 13 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 14 N -0.69 -12.38 4.51 -54.88 -0.25 -12.63 16 15 C 0.60 10.93 7.78 -12.52 -0.10 10.83 16 16 O -0.55 -10.82 16.55 5.26 0.09 -10.74 16 17 C -0.06 -0.99 6.99 -83.02 -0.58 -1.57 16 18 C 0.01 0.07 11.95 29.96 0.36 0.43 16 19 O -0.20 -2.45 10.73 6.52 0.07 -2.38 16 20 C 0.20 2.58 6.82 -13.08 -0.09 2.49 16 21 C 0.01 0.09 2.75 -91.59 -0.25 -0.16 16 22 C -0.15 -1.38 5.41 -26.59 -0.14 -1.52 16 23 C 0.06 0.49 6.84 37.21 0.25 0.74 16 24 O -0.38 -3.46 10.77 -35.23 -0.38 -3.83 16 25 C 0.06 0.44 6.84 37.21 0.25 0.69 16 26 C -0.15 -1.18 5.40 -26.59 -0.14 -1.32 16 27 N -0.45 -7.07 11.06 -7.65 -0.08 -7.16 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.39 10.63 7.33 -40.82 -0.30 10.33 16 34 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 35 H 0.41 7.57 8.33 -40.82 -0.34 7.23 16 36 H 0.23 2.27 8.06 -52.49 -0.42 1.84 16 37 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 42 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 378.72 15.07 5.71 5.71 Total: -1.00 -34.06 378.72 -6.93 -41.00 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -6.92 Total: 12.99 kcal Atomic # 6 Polarization: 6.89 SS G_CDS: -0.54 Total: 6.35 kcal Atomic # 7 Polarization: -66.62 SS G_CDS: 0.07 Total: -66.55 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.22 Total: -16.95 kcal Atomic # 14 Polarization: 22.48 SS G_CDS: -5.02 Total: 17.45 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.06 -6.93 -41.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498156651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.215 kcal (2) G-P(sol) polarization free energy of solvation -34.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds