Wall clock time and date at job start Tue Mar 31 2020 14:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.47399 * 2 1 4 4 C 1.52997 * 109.46977 * 120.00669 * 2 1 3 5 5 N 1.46503 * 109.46962 * 174.99636 * 4 2 1 6 6 C 1.36934 * 119.99920 * 179.97438 * 5 4 2 7 7 H 1.08004 * 120.00438 * 0.02562 * 6 5 4 8 8 C 1.38820 * 120.00027 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99916 * 359.97438 * 8 6 5 10 10 Si 1.86795 * 119.99862 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47204 * 90.00204 * 10 8 6 12 12 H 1.48500 * 109.46895 * 209.99811 * 10 8 6 13 13 H 1.48496 * 109.47474 * 329.99771 * 10 8 6 14 14 N 1.46505 * 109.46984 * 240.00726 * 2 1 3 15 15 C 1.34774 * 120.00343 * 85.00017 * 14 2 1 16 16 O 1.21614 * 119.99595 * 359.97438 * 15 14 2 17 17 C 1.47416 * 120.00042 * 180.02562 * 15 14 2 18 18 C 1.36091 * 126.44912 * 179.97438 * 17 15 14 19 19 O 1.34256 * 106.94932 * 180.02562 * 18 17 15 20 20 C 1.34047 * 108.22674 * 0.02562 * 19 18 17 21 21 C 1.50710 * 125.37563 * 180.26840 * 20 19 18 22 22 C 1.53174 * 109.54262 * 59.24707 * 21 20 19 23 23 C 1.53100 * 109.15810 * 183.15377 * 22 21 20 24 24 O 1.42902 * 109.41557 * 57.60676 * 23 22 21 25 25 C 1.42902 * 114.09871 * 298.84282 * 24 23 22 26 26 C 1.53093 * 109.41665 * 61.15719 * 25 24 23 27 27 N 1.29934 * 109.24538 * 359.97438 * 20 19 18 28 28 H 1.08993 * 109.47486 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46820 * 300.00044 * 1 2 3 30 30 H 1.09006 * 109.46879 * 59.99302 * 1 2 3 31 31 H 1.08997 * 109.47014 * 294.99250 * 4 2 1 32 32 H 1.08992 * 109.47277 * 55.00170 * 4 2 1 33 33 H 0.97001 * 120.00135 * 359.97438 * 5 4 2 34 34 H 0.97001 * 120.00036 * 180.02562 * 9 8 6 35 35 H 0.97008 * 119.99537 * 265.00465 * 14 2 1 36 36 H 1.07993 * 126.52411 * 359.97438 * 18 17 15 37 37 H 1.08999 * 109.53891 * 179.51292 * 21 20 19 38 38 H 1.08997 * 109.51975 * 303.05335 * 22 21 20 39 39 H 1.08994 * 109.52475 * 63.24728 * 22 21 20 40 40 H 1.09001 * 109.48231 * 297.62309 * 23 22 21 41 41 H 1.08995 * 109.47901 * 177.59201 * 23 22 21 42 42 H 1.09001 * 109.47984 * 301.17437 * 25 24 23 43 43 H 1.09001 * 109.47814 * 181.14316 * 25 24 23 44 44 H 1.08995 * 109.52051 * 182.48950 * 26 25 24 45 45 H 1.09004 * 109.57131 * 62.33047 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 1.2491 5 7 3.5000 -0.8266 1.1904 6 6 4.1838 -1.4382 2.2070 7 1 3.6468 -1.8435 3.0519 8 6 5.5674 -1.5375 2.1516 9 7 6.2218 -1.0441 1.1218 10 14 6.5001 -2.3725 3.5380 11 1 6.6327 -3.8218 3.2428 12 1 7.8504 -1.7669 3.6612 13 1 5.7588 -2.1926 4.8120 14 7 2.0183 -0.6905 -1.1963 15 6 2.1471 -0.0181 -2.3572 16 8 1.8574 1.1618 -2.4118 17 6 2.6379 -0.7131 -3.5611 18 6 2.8169 -0.1657 -4.7941 19 8 3.2747 -1.1426 -5.5933 20 6 3.3743 -2.2655 -4.8679 21 6 3.8555 -3.5974 -5.3835 22 6 5.2827 -3.4535 -5.9207 23 6 5.7337 -4.7912 -6.5134 24 8 4.8223 -5.1871 -7.5404 25 6 3.4814 -5.3829 -7.0868 26 6 2.9399 -4.0691 -6.5172 27 7 2.9963 -2.0227 -3.6487 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 1.7517 -0.1585 2.1369 32 1 1.6054 -1.7199 1.2949 33 1 3.9824 -0.4630 0.4314 34 1 7.1886 -1.1137 1.0829 35 1 2.2490 -1.6318 -1.1528 36 1 2.6262 0.8591 -5.0763 37 1 3.8408 -4.3282 -4.5749 38 1 5.3049 -2.6863 -6.6947 39 1 5.9514 -3.1714 -5.1076 40 1 5.7500 -5.5488 -5.7299 41 1 6.7327 -4.6832 -6.9357 42 1 3.4682 -6.1483 -6.3108 43 1 2.8579 -5.7013 -7.9223 44 1 1.9332 -4.2273 -6.1305 45 1 2.9139 -3.3138 -7.3027 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001498156651.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:18:27 Heat of formation + Delta-G solvation = -85.955684 kcal Electronic energy + Delta-G solvation = -27408.444896 eV Core-core repulsion = 23426.489985 eV Total energy + Delta-G solvation = -3981.954912 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.57410 -40.80307 -40.23898 -37.76576 -36.11392 -35.48865 -35.41843 -33.05540 -32.11649 -31.69406 -30.88385 -27.46108 -26.65475 -25.60434 -24.58129 -24.45268 -22.88648 -22.38641 -21.60680 -20.91453 -19.45764 -19.00123 -17.93402 -17.74940 -17.31779 -17.13014 -16.89998 -16.67625 -15.98481 -15.90594 -15.76979 -15.53802 -15.24301 -15.16282 -14.85479 -14.79617 -14.14620 -13.97033 -13.68140 -13.59692 -13.37299 -13.10671 -12.78781 -12.70270 -12.53003 -12.50658 -12.35145 -12.16762 -11.96898 -11.91022 -11.85670 -11.73538 -11.41622 -11.29294 -10.97665 -10.60853 -10.27351 -9.99866 -9.03643 -7.95394 -5.25793 0.00674 0.86977 1.46642 1.46836 1.48757 1.57204 2.02298 2.21423 2.54906 2.64896 2.97867 3.38626 3.53580 3.58071 3.66127 3.78218 3.82549 3.96307 3.99868 4.06825 4.26422 4.27114 4.33967 4.44982 4.47018 4.56946 4.59635 4.70381 4.76374 4.76481 4.82290 4.82484 4.88958 4.91777 5.01568 5.05913 5.08926 5.19578 5.27191 5.46613 5.49664 6.24419 6.24514 6.26138 6.54474 7.04615 7.31400 8.04500 8.28377 9.27846 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009819 B = 0.003491 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2850.881779 B = 8018.902485 C =10055.173525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.137 3.863 3 H 0.067 0.933 4 C 0.145 3.855 5 N -0.745 5.745 6 C -0.246 4.246 7 H 0.081 0.919 8 C -0.074 4.074 9 N -0.970 5.970 10 Si 0.976 3.024 11 H -0.285 1.285 12 H -0.298 1.298 13 H -0.268 1.268 14 N -0.691 5.691 15 C 0.599 3.401 16 O -0.571 6.571 17 C -0.100 4.100 18 C 0.029 3.971 19 O -0.189 6.189 20 C 0.206 3.794 21 C 0.007 3.993 22 C -0.151 4.151 23 C 0.065 3.935 24 O -0.398 6.398 25 C 0.061 3.939 26 C -0.145 4.145 27 N -0.479 5.479 28 H 0.069 0.931 29 H 0.086 0.914 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.038 0.962 33 H 0.372 0.628 34 H 0.250 0.750 35 H 0.410 0.590 36 H 0.260 0.740 37 H 0.118 0.882 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.112 0.888 42 H 0.066 0.934 43 H 0.117 0.883 44 H 0.089 0.911 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.801 -7.169 -18.434 21.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.033 3.967 3 H 0.085 0.915 4 C 0.018 3.982 5 N -0.388 5.388 6 C -0.378 4.378 7 H 0.098 0.902 8 C -0.267 4.267 9 N -0.620 5.620 10 Si 0.805 3.195 11 H -0.212 1.212 12 H -0.225 1.225 13 H -0.193 1.193 14 N -0.340 5.340 15 C 0.385 3.615 16 O -0.451 6.451 17 C -0.219 4.219 18 C -0.045 4.045 19 O -0.075 6.075 20 C -0.003 4.003 21 C -0.012 4.012 22 C -0.189 4.189 23 C -0.012 4.012 24 O -0.317 6.317 25 C -0.015 4.015 26 C -0.183 4.183 27 N -0.208 5.208 28 H 0.088 0.912 29 H 0.105 0.895 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.056 0.944 33 H 0.204 0.796 34 H 0.058 0.942 35 H 0.246 0.754 36 H 0.276 0.724 37 H 0.136 0.864 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.130 0.870 42 H 0.085 0.915 43 H 0.135 0.865 44 H 0.108 0.892 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.981 -6.900 -17.951 21.225 hybrid contribution 1.015 0.331 0.547 1.200 sum -7.965 -6.569 -17.404 20.236 Atomic orbital electron populations 1.22010 0.92184 1.03130 1.03063 1.21257 0.95736 0.96310 0.83400 0.91505 1.21151 0.84044 0.97999 0.94992 1.42550 1.01877 1.70059 1.24309 1.19663 0.89943 1.28540 0.99622 0.90152 1.25597 0.97520 1.02957 1.00590 1.69854 1.06959 1.52767 1.32434 0.85109 0.77544 0.77775 0.79119 1.21246 1.22483 1.19254 1.45837 1.64757 1.14692 1.08736 1.16976 0.76891 0.85280 0.82352 1.90755 1.53276 1.15627 1.85476 1.21771 1.11901 0.91652 0.96551 1.25795 0.95975 0.94979 0.87789 1.84384 1.63770 1.18444 1.40858 1.26691 0.98910 0.90068 0.84680 1.20038 0.96233 0.85251 0.99679 1.22296 0.94229 1.00719 1.01679 1.22652 0.93862 0.93467 0.91218 1.87938 1.19398 1.88662 1.35701 1.22730 0.82914 0.94795 1.01067 1.22283 0.99371 0.99820 0.96837 1.70775 1.15791 1.14604 1.19665 0.91164 0.89481 0.92657 0.93713 0.94447 0.79618 0.94166 0.75436 0.72448 0.86384 0.90343 0.90542 0.91645 0.87006 0.91539 0.86538 0.89241 0.90383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.90 9.48 71.98 0.68 -3.21 16 2 C 0.14 4.82 2.73 44.99 0.12 4.95 16 3 H 0.07 2.64 7.58 -2.39 -0.02 2.63 16 4 C 0.14 5.72 5.82 86.38 0.50 6.22 16 5 N -0.74 -38.37 5.43 -343.45 -1.87 -40.24 16 6 C -0.25 -13.77 9.99 84.04 0.84 -12.93 16 7 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 8 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 9 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 10 Si 0.98 46.29 29.55 68.60 2.03 48.32 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.52 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 13 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 14 N -0.69 -25.23 4.51 -445.80 -2.01 -27.24 16 15 C 0.60 22.17 7.78 86.66 0.67 22.84 16 16 O -0.57 -22.91 16.55 -4.08 -0.07 -22.98 16 17 C -0.10 -3.26 6.99 40.41 0.28 -2.97 16 18 C 0.03 0.73 11.95 67.32 0.80 1.54 16 19 O -0.19 -4.57 10.73 0.42 0.00 -4.56 16 20 C 0.21 5.28 6.82 88.39 0.60 5.88 16 21 C 0.01 0.14 2.75 -11.42 -0.03 0.10 16 22 C -0.15 -2.59 5.41 30.69 0.17 -2.42 16 23 C 0.06 0.92 6.84 72.02 0.49 1.41 16 24 O -0.40 -6.50 10.77 -148.98 -1.60 -8.11 16 25 C 0.06 0.73 6.84 72.01 0.49 1.22 16 26 C -0.14 -2.02 5.40 30.68 0.17 -1.85 16 27 N -0.48 -15.32 11.06 -293.03 -3.24 -18.56 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 30 H 0.05 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 33 H 0.37 21.04 7.33 -92.71 -0.68 20.36 16 34 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 35 H 0.41 15.37 8.33 -92.70 -0.77 14.60 16 36 H 0.26 4.70 8.06 -2.91 -0.02 4.68 16 37 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 38 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 45 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 Total: -1.00 -73.38 378.72 -0.65 -74.03 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: -0.44 Total: 42.60 kcal Atomic # 6 Polarization: 10.67 SS G_CDS: 6.26 Total: 16.93 kcal Atomic # 7 Polarization: -139.40 SS G_CDS: -6.84 Total: -146.23 kcal Atomic # 8 Polarization: -33.98 SS G_CDS: -1.67 Total: -35.65 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.32 kcal Total: -73.38 -0.65 -74.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001498156651.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.924 kcal (2) G-P(sol) polarization free energy of solvation -73.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds