Wall clock time and date at job start Tue Mar 31 2020 14:01:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.73019 * 2 1 4 4 C 1.54940 * 110.66959 * 236.90066 * 2 1 3 5 5 C 1.54593 * 102.92151 * 204.15441 * 4 2 1 6 6 C 1.53988 * 105.14261 * 21.95280 * 5 4 2 7 7 H 1.09001 * 109.92107 * 241.87127 * 6 5 4 8 8 C 1.50705 * 110.08012 * 120.67079 * 6 5 4 9 9 O 1.20826 * 119.99946 * 242.30729 * 8 6 5 10 10 O 1.34226 * 120.00149 * 62.31751 * 8 6 5 11 11 N 1.47900 * 107.05993 * 1.22751 * 6 5 4 12 12 C 1.46895 * 111.00494 * 214.15282 * 11 6 5 13 13 C 1.50703 * 109.46760 * 62.68199 * 12 11 6 14 14 O 1.21276 * 120.00187 * 353.29148 * 13 12 11 15 15 N 1.34775 * 119.99836 * 173.29614 * 13 12 11 16 16 C 1.46504 * 120.00161 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47125 * 89.99565 * 16 15 13 18 18 H 1.07995 * 119.99859 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00010 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00162 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99898 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47439 * 89.99374 * 21 19 17 23 23 H 1.48501 * 109.47030 * 210.00081 * 21 19 17 24 24 H 1.48498 * 109.46943 * 329.99418 * 21 19 17 25 25 C 1.46501 * 120.00217 * 359.97438 * 15 13 12 26 26 C 1.53001 * 109.47014 * 89.99908 * 25 15 13 27 27 C 1.47202 * 109.47168 * 179.97438 * 26 25 15 28 28 N 7.68156 * 91.79775 * 81.01666 * 2 1 3 29 29 H 1.09002 * 109.47327 * 296.91012 * 1 2 3 30 30 H 1.09000 * 109.46995 * 56.90405 * 1 2 3 31 31 H 1.09001 * 109.47226 * 176.90708 * 1 2 3 32 32 H 1.08995 * 110.72405 * 85.79228 * 4 2 1 33 33 H 1.09002 * 110.87134 * 322.57922 * 4 2 1 34 34 H 1.09006 * 110.30888 * 263.03769 * 5 4 2 35 35 H 1.08995 * 110.31134 * 140.87339 * 5 4 2 36 36 H 0.96698 * 117.00518 * 179.97438 * 10 8 6 37 37 H 1.09004 * 109.47155 * 302.68778 * 12 11 6 38 38 H 1.08998 * 109.47792 * 182.68147 * 12 11 6 39 39 H 1.09003 * 109.47136 * 210.00074 * 16 15 13 40 40 H 1.09003 * 109.46769 * 329.99744 * 16 15 13 41 41 H 0.96996 * 119.99861 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47358 * 209.99866 * 25 15 13 43 43 H 1.08998 * 109.46786 * 330.00096 * 25 15 13 44 44 H 1.08993 * 109.47648 * 299.99999 * 26 25 15 45 45 H 1.09006 * 109.46840 * 60.00476 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0769 -0.7917 -1.2144 5 6 3.4853 -1.2198 -0.7421 6 6 3.4279 -1.1647 0.7957 7 1 4.1440 -0.4322 1.1681 8 6 3.7347 -2.5221 1.3739 9 8 2.9012 -3.1023 2.0286 10 8 4.9339 -3.0866 1.1618 11 7 2.0542 -0.7588 1.1644 12 6 2.0579 0.0721 2.3757 13 6 2.8239 1.3426 2.1110 14 8 3.4202 1.4844 1.0645 15 7 2.8464 2.3213 3.0373 16 6 3.5906 3.5568 2.7798 17 6 2.6855 4.5579 2.1093 18 1 1.6586 4.2999 1.8967 19 6 3.1682 5.8036 1.7683 20 7 2.3782 6.6775 1.1836 21 14 4.9442 6.2501 2.1367 22 1 5.7986 5.8765 0.9810 23 1 5.0476 7.7119 2.3768 24 1 5.3984 5.5168 3.3455 25 6 2.1258 2.1504 4.3013 26 6 3.0521 1.5037 5.3331 27 6 2.3283 1.3324 6.6033 28 7 1.7709 1.1989 7.5836 29 1 -0.3634 0.4651 0.9164 30 1 -0.3633 0.5612 -0.8609 31 1 -0.3634 -1.0262 -0.0554 32 1 2.1430 -0.1514 -2.0940 33 1 1.4571 -1.6645 -1.4200 34 1 4.2374 -0.5259 -1.1177 35 1 3.7044 -2.2338 -1.0764 36 1 5.0844 -3.9579 1.5530 37 1 2.5325 -0.4752 3.1903 38 1 1.0323 0.3170 2.6516 39 1 3.9509 3.9672 3.7231 40 1 4.4387 3.3412 2.1298 41 1 2.7179 7.5537 0.9434 42 1 1.7976 3.1233 4.6670 43 1 1.2578 1.5108 4.1410 44 1 3.3803 0.5307 4.9675 45 1 3.9201 2.1433 5.4934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574274528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:20 Heat of formation + Delta-G solvation = -77.718055 kcal Electronic energy + Delta-G solvation = -28850.031051 eV Core-core repulsion = 24868.433350 eV Total energy + Delta-G solvation = -3981.597701 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.95372 -39.72619 -38.04940 -36.88130 -36.01927 -35.40574 -33.01778 -32.25025 -31.64702 -31.10701 -28.55677 -26.90250 -25.73706 -24.13976 -22.85234 -22.33019 -20.81303 -20.20672 -18.59526 -17.96707 -17.78918 -17.19711 -16.91329 -16.47280 -16.21862 -15.46297 -15.27596 -14.96842 -14.78102 -14.62230 -14.26243 -13.86155 -13.81682 -13.36041 -13.12443 -12.77909 -12.67415 -12.57132 -12.45062 -12.35059 -12.05303 -11.92746 -11.70288 -11.65630 -11.44742 -11.35201 -11.28074 -11.12422 -10.94677 -10.69722 -10.64416 -10.53030 -10.33325 -10.12151 -9.96295 -9.63145 -8.69817 -8.16438 -8.02276 -6.19207 -4.19428 2.25720 2.63483 2.74349 2.83256 2.97960 3.20151 3.25385 3.28176 3.45502 4.00574 4.09576 4.29034 4.55042 4.68356 4.76834 4.90526 4.98908 5.05050 5.14286 5.18322 5.24871 5.35982 5.40155 5.47607 5.57671 5.66737 5.68340 5.77054 5.86983 5.93649 5.95334 6.07679 6.08614 6.24456 6.43118 6.46398 6.47418 6.74336 6.75775 6.94933 7.05467 7.46899 7.50144 7.91828 7.95278 8.32092 8.61148 8.84014 9.39984 10.93840 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009690 B = 0.004890 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.909657 B = 5724.936216 C = 7122.908149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.044 3.956 3 H 0.103 0.897 4 C -0.115 4.115 5 C -0.107 4.107 6 C 0.072 3.928 7 H 0.112 0.888 8 C 0.481 3.519 9 O -0.499 6.499 10 O -0.520 6.520 11 N -0.474 5.474 12 C 0.021 3.979 13 C 0.478 3.522 14 O -0.530 6.530 15 N -0.586 5.586 16 C 0.213 3.787 17 C -0.532 4.532 18 H 0.075 0.925 19 C 0.075 3.925 20 N -0.894 5.894 21 Si 0.874 3.126 22 H -0.274 1.274 23 H -0.285 1.285 24 H -0.266 1.266 25 C 0.114 3.886 26 C -0.050 4.050 27 C 0.215 3.785 28 N -0.439 5.439 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.405 0.595 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.032 0.968 40 H 0.039 0.961 41 H 0.265 0.735 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.948 -16.015 -0.193 16.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.062 4.062 3 H 0.120 0.880 4 C -0.153 4.153 5 C -0.146 4.146 6 C -0.038 4.038 7 H 0.130 0.870 8 C 0.321 3.679 9 O -0.385 6.385 10 O -0.332 6.332 11 N -0.197 5.197 12 C -0.111 4.111 13 C 0.264 3.736 14 O -0.408 6.408 15 N -0.317 5.317 16 C 0.092 3.908 17 C -0.570 4.570 18 H 0.093 0.907 19 C -0.128 4.128 20 N -0.532 5.532 21 Si 0.701 3.299 22 H -0.199 1.199 23 H -0.211 1.211 24 H -0.190 1.190 25 C -0.012 4.012 26 C -0.091 4.091 27 C -0.103 4.103 28 N -0.117 5.117 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.264 0.736 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.050 0.950 40 H 0.057 0.943 41 H 0.075 0.925 42 H 0.117 0.883 43 H 0.100 0.900 44 H 0.124 0.876 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 1.793 -16.166 0.767 16.283 hybrid contribution 1.687 0.631 0.103 1.804 sum 3.479 -15.534 0.870 15.943 Atomic orbital electron populations 1.21677 0.93852 1.01832 1.01824 1.23248 0.95589 0.99154 0.88259 0.87985 1.22494 0.95171 0.99864 0.97755 1.22202 0.98953 1.02291 0.91109 1.21996 0.93898 0.90598 0.97334 0.87016 1.23626 0.78648 0.88232 0.77377 1.90687 1.47477 1.63339 1.36995 1.84554 1.36977 1.38327 1.73323 1.64569 1.15925 1.35806 1.03411 1.22548 1.02395 0.91090 0.95089 1.21600 0.82044 0.85653 0.84273 1.90628 1.45010 1.80585 1.24581 1.48040 1.50465 1.17981 1.15171 1.19755 0.92895 0.81177 0.96932 1.21257 0.99084 0.97075 1.39617 0.90655 1.24847 0.97420 0.96159 0.94393 1.69883 1.35848 1.06647 1.40805 0.86888 0.85642 0.77949 0.79389 1.19934 1.21082 1.19045 1.21390 0.93381 1.02854 0.83584 1.19854 0.98847 1.04485 0.85936 1.28968 0.93772 0.93051 0.94521 1.81202 1.09389 1.09074 1.11989 0.92696 0.92010 0.92311 0.90488 0.91133 0.89596 0.91126 0.73648 0.88188 0.87237 0.95019 0.94261 0.92455 0.88313 0.90045 0.87607 0.86666 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.66 9.51 37.16 0.35 -1.31 16 2 C 0.04 0.61 2.51 -65.78 -0.17 0.45 16 3 H 0.10 1.76 5.13 -51.93 -0.27 1.50 16 4 C -0.11 -1.37 6.50 -24.87 -0.16 -1.53 16 5 C -0.11 -1.28 6.55 -25.38 -0.17 -1.45 16 6 C 0.07 0.95 2.28 -67.80 -0.15 0.79 16 7 H 0.11 1.62 5.71 -51.93 -0.30 1.32 16 8 C 0.48 6.06 7.45 36.01 0.27 6.33 16 9 O -0.50 -7.54 17.22 -18.75 -0.32 -7.86 16 10 O -0.52 -5.05 13.40 -39.25 -0.53 -5.57 16 11 N -0.47 -6.48 4.37 -217.58 -0.95 -7.43 16 12 C 0.02 0.27 4.59 -4.98 -0.02 0.25 16 13 C 0.48 7.73 6.56 -10.98 -0.07 7.66 16 14 O -0.53 -10.21 11.37 5.56 0.06 -10.15 16 15 N -0.59 -9.57 2.46 -175.05 -0.43 -10.00 16 16 C 0.21 4.41 4.23 -5.19 -0.02 4.39 16 17 C -0.53 -13.73 9.94 -34.44 -0.34 -14.07 16 18 H 0.08 2.16 8.06 -52.49 -0.42 1.73 16 19 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 20 N -0.89 -26.04 13.96 55.43 0.77 -25.27 16 21 Si 0.87 20.00 27.47 -169.99 -4.67 15.33 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -5.61 6.54 56.52 0.37 -5.24 16 25 C 0.11 1.39 5.19 -4.04 -0.02 1.37 16 26 C -0.05 -0.47 6.03 -29.52 -0.18 -0.65 16 27 C 0.22 2.48 15.43 -20.78 -0.32 2.16 16 28 N -0.44 -6.31 18.53 42.13 0.78 -5.53 16 29 H 0.05 0.69 7.52 -51.93 -0.39 0.30 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.68 8.11 -51.93 -0.42 0.26 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.07 0.78 8.03 -51.93 -0.42 0.36 16 34 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.07 0.74 7.69 -51.93 -0.40 0.34 16 36 H 0.41 2.13 9.10 45.56 0.41 2.54 16 37 H 0.10 1.13 7.43 -51.93 -0.39 0.74 16 38 H 0.11 1.29 6.42 -51.93 -0.33 0.96 16 39 H 0.03 0.62 7.13 -51.93 -0.37 0.25 16 40 H 0.04 0.88 6.85 -51.93 -0.36 0.52 16 41 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.10 1.30 8.07 -51.93 -0.42 0.88 16 43 H 0.08 0.84 6.26 -51.93 -0.32 0.52 16 44 H 0.11 0.81 7.43 -51.93 -0.39 0.43 16 45 H 0.12 1.01 8.14 -51.93 -0.42 0.59 16 LS Contribution 371.56 15.07 5.60 5.60 Total: -1.00 -33.91 371.56 -6.41 -40.32 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.63 Total: 4.25 kcal Atomic # 6 Polarization: 7.41 SS G_CDS: -1.10 Total: 6.31 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: 0.17 Total: -48.22 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.79 Total: -23.58 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -4.67 Total: 15.33 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.91 -6.41 -40.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574274528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.396 kcal (2) G-P(sol) polarization free energy of solvation -33.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds