Wall clock time and date at job start Tue Mar 31 2020 14:01:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 110.73019 * 2 1 4 4 C 1.54940 * 110.66959 * 236.90066 * 2 1 3 5 5 C 1.54593 * 102.92151 * 204.15441 * 4 2 1 6 6 C 1.53988 * 105.14261 * 21.95280 * 5 4 2 7 7 H 1.09001 * 109.92107 * 241.87127 * 6 5 4 8 8 C 1.50705 * 110.08012 * 120.67079 * 6 5 4 9 9 O 1.20826 * 119.99946 * 242.30729 * 8 6 5 10 10 O 1.34226 * 120.00149 * 62.31751 * 8 6 5 11 11 N 1.47900 * 107.05993 * 1.22751 * 6 5 4 12 12 C 1.46895 * 111.00494 * 214.15282 * 11 6 5 13 13 C 1.50703 * 109.46760 * 62.68199 * 12 11 6 14 14 O 1.21276 * 120.00187 * 353.29148 * 13 12 11 15 15 N 1.34775 * 119.99836 * 173.29614 * 13 12 11 16 16 C 1.46504 * 120.00161 * 180.02562 * 15 13 12 17 17 C 1.50700 * 109.47125 * 89.99565 * 16 15 13 18 18 H 1.07995 * 119.99859 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00010 * 179.97438 * 17 16 15 20 20 N 1.31512 * 120.00162 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99898 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47439 * 89.99374 * 21 19 17 23 23 H 1.48501 * 109.47030 * 210.00081 * 21 19 17 24 24 H 1.48498 * 109.46943 * 329.99418 * 21 19 17 25 25 C 1.46501 * 120.00217 * 359.97438 * 15 13 12 26 26 C 1.53001 * 109.47014 * 89.99908 * 25 15 13 27 27 C 1.47202 * 109.47168 * 179.97438 * 26 25 15 28 28 N 7.68156 * 91.79775 * 81.01666 * 2 1 3 29 29 H 1.09002 * 109.47327 * 296.91012 * 1 2 3 30 30 H 1.09000 * 109.46995 * 56.90405 * 1 2 3 31 31 H 1.09001 * 109.47226 * 176.90708 * 1 2 3 32 32 H 1.08995 * 110.72405 * 85.79228 * 4 2 1 33 33 H 1.09002 * 110.87134 * 322.57922 * 4 2 1 34 34 H 1.09006 * 110.30888 * 263.03769 * 5 4 2 35 35 H 1.08995 * 110.31134 * 140.87339 * 5 4 2 36 36 H 0.96698 * 117.00518 * 179.97438 * 10 8 6 37 37 H 1.09004 * 109.47155 * 302.68778 * 12 11 6 38 38 H 1.08998 * 109.47792 * 182.68147 * 12 11 6 39 39 H 1.09003 * 109.47136 * 210.00074 * 16 15 13 40 40 H 1.09003 * 109.46769 * 329.99744 * 16 15 13 41 41 H 0.96996 * 119.99861 * 180.02562 * 20 19 17 42 42 H 1.09000 * 109.47358 * 209.99866 * 25 15 13 43 43 H 1.08998 * 109.46786 * 330.00096 * 25 15 13 44 44 H 1.08993 * 109.47648 * 299.99999 * 26 25 15 45 45 H 1.09006 * 109.46840 * 60.00476 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9158 1.0194 0.0000 4 6 2.0769 -0.7917 -1.2144 5 6 3.4853 -1.2198 -0.7421 6 6 3.4279 -1.1647 0.7957 7 1 4.1440 -0.4322 1.1681 8 6 3.7347 -2.5221 1.3739 9 8 2.9012 -3.1023 2.0286 10 8 4.9339 -3.0866 1.1618 11 7 2.0542 -0.7588 1.1644 12 6 2.0579 0.0721 2.3757 13 6 2.8239 1.3426 2.1110 14 8 3.4202 1.4844 1.0645 15 7 2.8464 2.3213 3.0373 16 6 3.5906 3.5568 2.7798 17 6 2.6855 4.5579 2.1093 18 1 1.6586 4.2999 1.8967 19 6 3.1682 5.8036 1.7683 20 7 2.3782 6.6775 1.1836 21 14 4.9442 6.2501 2.1367 22 1 5.7986 5.8765 0.9810 23 1 5.0476 7.7119 2.3768 24 1 5.3984 5.5168 3.3455 25 6 2.1258 2.1504 4.3013 26 6 3.0521 1.5037 5.3331 27 6 2.3283 1.3324 6.6033 28 7 1.7709 1.1989 7.5836 29 1 -0.3634 0.4651 0.9164 30 1 -0.3633 0.5612 -0.8609 31 1 -0.3634 -1.0262 -0.0554 32 1 2.1430 -0.1514 -2.0940 33 1 1.4571 -1.6645 -1.4200 34 1 4.2374 -0.5259 -1.1177 35 1 3.7044 -2.2338 -1.0764 36 1 5.0844 -3.9579 1.5530 37 1 2.5325 -0.4752 3.1903 38 1 1.0323 0.3170 2.6516 39 1 3.9509 3.9672 3.7231 40 1 4.4387 3.3412 2.1298 41 1 2.7179 7.5537 0.9434 42 1 1.7976 3.1233 4.6670 43 1 1.2578 1.5108 4.1410 44 1 3.3803 0.5307 4.9675 45 1 3.9201 2.1433 5.4934 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574274528.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:19 Heat of formation + Delta-G solvation = -102.203084 kcal Electronic energy + Delta-G solvation = -28851.092802 eV Core-core repulsion = 24868.433350 eV Total energy + Delta-G solvation = -3982.659452 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.03835 -40.80490 -39.13540 -37.92176 -36.93396 -36.66616 -34.84028 -33.42672 -32.66450 -32.31570 -30.09023 -28.00435 -26.92629 -25.26488 -24.11488 -23.64079 -21.79215 -21.34173 -19.82828 -19.17520 -18.87210 -18.51503 -18.24714 -17.57474 -17.31555 -16.77911 -16.29279 -16.13117 -15.94657 -15.72979 -15.64128 -15.02721 -14.79459 -14.61023 -14.39796 -14.19379 -13.81857 -13.65619 -13.60381 -13.48885 -13.25089 -13.08021 -13.04744 -12.75086 -12.55861 -12.41836 -12.36419 -12.31780 -12.26842 -11.98893 -11.87103 -11.70569 -11.67564 -11.54005 -11.26847 -11.10346 -10.76101 -9.45102 -9.32117 -8.26787 -6.31054 1.29181 1.39073 1.42073 1.49385 1.62646 1.77541 1.84190 1.94987 2.25925 2.36534 3.00213 3.08572 3.14966 3.55606 3.68170 3.73736 3.98733 4.07868 4.10427 4.23798 4.28706 4.38968 4.49228 4.55711 4.59606 4.67288 4.78837 4.79685 4.86749 4.88722 4.98099 5.00002 5.07206 5.10700 5.11711 5.25147 5.39438 5.52875 5.60499 5.66306 5.75787 5.86766 6.29071 6.59205 6.65017 6.72714 7.13016 7.25625 7.38810 8.89889 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009690 B = 0.004890 C = 0.003930 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2888.909657 B = 5724.936216 C = 7122.908149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.042 3.958 3 H 0.065 0.935 4 C -0.112 4.112 5 C -0.106 4.106 6 C 0.067 3.933 7 H 0.099 0.901 8 C 0.492 3.508 9 O -0.525 6.525 10 O -0.513 6.513 11 N -0.473 5.473 12 C 0.028 3.972 13 C 0.476 3.524 14 O -0.564 6.564 15 N -0.589 5.589 16 C 0.222 3.778 17 C -0.528 4.528 18 H 0.030 0.970 19 C 0.011 3.989 20 N -0.949 5.949 21 Si 0.941 3.059 22 H -0.278 1.278 23 H -0.287 1.287 24 H -0.229 1.229 25 C 0.109 3.891 26 C -0.037 4.037 27 C 0.244 3.756 28 N -0.490 5.490 29 H 0.049 0.951 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.427 0.573 37 H 0.125 0.875 38 H 0.122 0.878 39 H 0.056 0.944 40 H 0.028 0.972 41 H 0.265 0.735 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.134 0.866 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.525 -18.173 0.822 18.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.066 4.066 3 H 0.082 0.918 4 C -0.150 4.150 5 C -0.144 4.144 6 C -0.043 4.043 7 H 0.117 0.883 8 C 0.334 3.666 9 O -0.413 6.413 10 O -0.327 6.327 11 N -0.197 5.197 12 C -0.104 4.104 13 C 0.264 3.736 14 O -0.444 6.444 15 N -0.320 5.320 16 C 0.100 3.900 17 C -0.567 4.567 18 H 0.049 0.951 19 C -0.187 4.187 20 N -0.589 5.589 21 Si 0.764 3.236 22 H -0.204 1.204 23 H -0.213 1.213 24 H -0.152 1.152 25 C -0.015 4.015 26 C -0.078 4.078 27 C -0.074 4.074 28 N -0.168 5.168 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.106 0.894 36 H 0.289 0.711 37 H 0.143 0.857 38 H 0.140 0.860 39 H 0.074 0.926 40 H 0.046 0.954 41 H 0.074 0.926 42 H 0.104 0.896 43 H 0.119 0.881 44 H 0.151 0.849 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 3.378 -18.380 1.821 18.777 hybrid contribution 1.144 1.258 -0.300 1.726 sum 4.522 -17.123 1.521 17.775 Atomic orbital electron populations 1.21644 0.92870 1.02503 1.01723 1.23154 0.96363 0.97486 0.89549 0.91755 1.22501 0.95374 1.00084 0.97014 1.22206 0.98665 1.03067 0.90433 1.21991 0.93263 0.90917 0.98096 0.88342 1.23314 0.78943 0.87743 0.76612 1.90684 1.48448 1.63990 1.38227 1.84499 1.35282 1.39789 1.73080 1.64635 1.16250 1.35353 1.03423 1.22648 1.02675 0.89419 0.95661 1.22217 0.81518 0.86418 0.83470 1.90620 1.46405 1.81415 1.25990 1.47981 1.50603 1.16585 1.16793 1.19417 0.91771 0.81814 0.97044 1.21571 0.97941 0.98224 1.38974 0.95143 1.25801 1.02240 0.96222 0.94400 1.70057 1.38359 1.07302 1.43194 0.85819 0.79599 0.77747 0.80408 1.20353 1.21264 1.15159 1.21553 0.94361 1.03124 0.82487 1.19840 0.98064 1.05994 0.83877 1.29161 0.92571 0.91438 0.94195 1.81244 1.10870 1.10964 1.13678 0.93201 0.91784 0.91142 0.90310 0.89768 0.90301 0.89438 0.71117 0.85744 0.86000 0.92570 0.95391 0.92616 0.89556 0.88127 0.84860 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 9.51 71.98 0.68 -2.45 16 2 C 0.04 1.14 2.51 45.26 0.11 1.26 16 3 H 0.06 2.30 5.13 -2.39 -0.01 2.29 16 4 C -0.11 -2.56 6.50 31.80 0.21 -2.36 16 5 C -0.11 -2.38 6.55 31.47 0.21 -2.17 16 6 C 0.07 1.67 2.28 44.31 0.10 1.77 16 7 H 0.10 2.75 5.71 -2.39 -0.01 2.74 16 8 C 0.49 11.19 7.45 71.24 0.53 11.72 16 9 O -0.53 -14.50 17.22 21.97 0.38 -14.12 16 10 O -0.51 -8.43 13.40 -51.38 -0.69 -9.12 16 11 N -0.47 -12.26 4.37 -842.30 -3.68 -15.94 16 12 C 0.03 0.66 4.59 85.56 0.39 1.06 16 13 C 0.48 15.00 6.56 87.66 0.58 15.57 16 14 O -0.56 -21.92 11.37 -3.02 -0.03 -21.96 16 15 N -0.59 -18.52 2.46 -826.14 -2.03 -20.55 16 16 C 0.22 8.97 4.23 85.63 0.36 9.33 16 17 C -0.53 -27.89 9.94 25.60 0.25 -27.63 16 18 H 0.03 1.83 8.06 -2.91 -0.02 1.80 16 19 C 0.01 0.61 5.47 84.66 0.46 1.07 16 20 N -0.95 -57.33 13.96 21.45 0.30 -57.03 16 21 Si 0.94 40.98 27.47 68.60 1.88 42.86 16 22 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 23 H -0.29 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.23 -8.53 6.54 99.48 0.65 -7.88 16 25 C 0.11 2.43 5.19 86.38 0.45 2.88 16 26 C -0.04 -0.57 6.03 28.79 0.17 -0.39 16 27 C 0.24 5.00 15.43 89.45 1.38 6.38 16 28 N -0.49 -13.31 18.53 20.00 0.37 -12.94 16 29 H 0.05 1.22 7.52 -2.39 -0.02 1.20 16 30 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.07 1.53 8.11 -2.39 -0.02 1.51 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 1.70 8.03 -2.39 -0.02 1.68 16 34 H 0.08 1.87 8.14 -2.38 -0.02 1.85 16 35 H 0.09 1.65 7.69 -2.39 -0.02 1.63 16 36 H 0.43 3.06 9.10 -74.06 -0.67 2.38 16 37 H 0.12 2.39 7.43 -2.38 -0.02 2.37 16 38 H 0.12 2.63 6.42 -2.39 -0.02 2.62 16 39 H 0.06 2.02 7.13 -2.39 -0.02 2.01 16 40 H 0.03 1.22 6.85 -2.39 -0.02 1.20 16 41 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 42 H 0.09 2.16 8.07 -2.39 -0.02 2.15 16 43 H 0.10 1.85 6.26 -2.39 -0.01 1.84 16 44 H 0.13 1.43 7.43 -2.39 -0.02 1.42 16 45 H 0.13 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -76.72 371.56 2.69 -74.02 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: 0.30 Total: 18.72 kcal Atomic # 6 Polarization: 10.15 SS G_CDS: 5.89 Total: 16.04 kcal Atomic # 7 Polarization: -101.42 SS G_CDS: -5.04 Total: -106.46 kcal Atomic # 8 Polarization: -44.85 SS G_CDS: -0.34 Total: -45.20 kcal Atomic # 14 Polarization: 40.98 SS G_CDS: 1.88 Total: 42.86 kcal Total: -76.72 2.69 -74.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574274528.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.180 kcal (2) G-P(sol) polarization free energy of solvation -76.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.694 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds