Wall clock time and date at job start Tue Mar 31 2020 14:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.45331 * 2 1 4 4 C 1.53045 * 109.46056 * 240.03683 * 2 1 3 5 5 C 1.53193 * 109.31252 * 301.34579 * 4 2 1 6 6 N 1.46927 * 108.77614 * 305.36388 * 5 4 2 7 7 C 1.34770 * 120.63071 * 233.58553 * 6 5 4 8 8 O 1.21589 * 120.00465 * 174.79047 * 7 6 5 9 9 N 1.34782 * 120.00199 * 354.79573 * 7 6 5 10 10 C 1.46500 * 120.00038 * 185.03576 * 9 7 6 11 11 H 1.08996 * 109.47377 * 324.99693 * 10 9 7 12 12 C 1.50703 * 109.46805 * 204.99699 * 10 9 7 13 13 H 1.08001 * 120.00307 * 0.02562 * 12 10 9 14 14 C 1.37871 * 119.99811 * 179.97438 * 12 10 9 15 15 N 1.31520 * 120.00426 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00185 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47151 * 90.00275 * 16 14 12 18 18 H 1.48497 * 109.47238 * 210.00408 * 16 14 12 19 19 H 1.48506 * 109.47005 * 330.00421 * 16 14 12 20 20 C 1.52999 * 109.47243 * 84.99974 * 10 9 7 21 21 F 1.39901 * 109.46909 * 59.99587 * 20 10 9 22 22 F 1.39892 * 109.47199 * 179.97438 * 20 10 9 23 23 F 1.39901 * 109.46928 * 299.99951 * 20 10 9 24 24 C 1.46927 * 118.73653 * 53.60574 * 6 5 4 25 25 C 1.53039 * 109.46178 * 119.97343 * 2 1 3 26 26 H 1.09002 * 109.49917 * 178.60788 * 25 2 1 27 27 C 1.53001 * 109.49623 * 298.66737 * 25 2 1 28 28 N 1.46896 * 109.47459 * 185.00091 * 27 25 2 29 29 H 1.09000 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47312 * 299.96040 * 1 2 3 31 31 H 1.09001 * 109.47242 * 59.95931 * 1 2 3 32 32 H 1.09000 * 109.49597 * 61.29584 * 4 2 1 33 33 H 1.09000 * 109.49820 * 181.39454 * 4 2 1 34 34 H 1.09002 * 109.58724 * 65.14603 * 5 4 2 35 35 H 1.08999 * 109.58750 * 185.57708 * 5 4 2 36 36 H 0.96995 * 119.99500 * 5.03309 * 9 7 6 37 37 H 0.96991 * 120.00367 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.58441 * 186.60403 * 24 6 5 39 39 H 1.09000 * 109.70219 * 66.25509 * 24 6 5 40 40 H 1.09008 * 109.47368 * 304.99970 * 27 25 2 41 41 H 1.08998 * 109.47082 * 64.99923 * 27 25 2 42 42 H 1.00902 * 111.00010 * 56.04554 * 28 27 25 43 43 H 1.00900 * 111.00170 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2644 6 7 1.8624 -2.8089 -0.0002 7 6 2.5155 -3.9878 -0.0003 8 8 2.8939 -4.4734 1.0483 9 7 2.7492 -4.6287 -1.1627 10 6 3.3598 -5.9604 -1.1551 11 1 4.0806 -6.0250 -0.3400 12 6 4.0624 -6.1983 -2.4669 13 1 4.0552 -5.4339 -3.2298 14 6 4.7153 -7.3915 -2.6927 15 7 4.7246 -8.3222 -1.7635 16 14 5.5868 -7.6862 -4.3185 17 1 6.9936 -7.2217 -4.2173 18 1 5.5661 -9.1369 -4.6353 19 1 4.8934 -6.9344 -5.3952 20 6 2.2725 -7.0189 -0.9595 21 9 1.3475 -6.9360 -2.0058 22 9 2.8556 -8.2905 -0.9528 23 9 1.6203 -6.7980 0.2583 24 6 1.4995 -2.1542 1.2641 25 6 2.0398 -0.7209 1.2500 26 1 3.1295 -0.7429 1.2382 27 6 1.5576 0.0196 2.4990 28 7 2.1447 -0.6014 3.6938 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5132 0.8904 31 1 -0.3634 0.5145 -0.8896 32 1 1.6957 -0.1933 -2.1399 33 1 3.1295 -0.7428 -1.2384 34 1 0.4145 -2.1347 -1.3674 35 1 1.9381 -2.7017 -2.0986 36 1 2.5131 -4.2082 -2.0042 37 1 5.1835 -9.1617 -1.9226 38 1 1.9381 -2.7019 2.0983 39 1 0.4148 -2.1349 1.3698 40 1 1.8654 1.0639 2.4438 41 1 0.4706 -0.0361 2.5574 42 1 3.1517 -0.6201 3.6337 43 1 1.8415 -0.1296 4.5326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576717752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:32 Heat of formation + Delta-G solvation = -165.967801 kcal Electronic energy + Delta-G solvation = -29875.843014 eV Core-core repulsion = 25348.561777 eV Total energy + Delta-G solvation = -4527.281238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.27217 -45.92596 -45.54194 -40.26168 -38.18028 -34.99545 -34.62755 -33.19074 -32.43006 -30.55273 -28.46533 -27.46685 -25.02311 -24.58684 -24.40360 -21.78105 -21.45228 -19.76760 -18.76500 -17.82792 -16.86219 -16.74799 -16.54863 -16.17614 -15.81714 -15.37055 -15.17051 -14.93249 -14.77396 -14.62073 -14.09015 -13.76494 -13.28962 -13.24388 -12.95181 -12.83369 -12.60331 -12.44443 -12.32777 -12.26390 -12.04418 -12.00262 -11.84833 -11.72014 -11.55279 -11.16271 -11.10459 -10.92734 -10.81116 -10.66478 -10.47569 -10.37647 -10.30716 -9.60218 -9.36954 -8.81215 -8.67856 -8.36101 -7.97612 -6.19198 -4.42733 3.14864 3.20884 3.27444 3.30721 3.82552 4.20817 4.28832 4.48279 4.59143 4.66979 4.72163 4.84034 4.97277 4.98368 5.17365 5.25362 5.32442 5.37485 5.44770 5.53801 5.57720 5.76632 5.82687 5.86037 5.89895 5.93123 5.96075 6.04206 6.12020 6.24535 6.32207 6.41642 6.81937 6.97229 7.00566 7.27937 7.30234 7.44519 7.66724 7.72284 8.54093 8.69393 9.20493 9.33231 10.72518 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.003894 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.009524 B = 7188.639948 C = 7660.262912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.084 4.084 3 H 0.068 0.932 4 C -0.129 4.129 5 C 0.110 3.890 6 N -0.635 5.635 7 C 0.703 3.297 8 O -0.581 6.581 9 N -0.728 5.728 10 C 0.261 3.739 11 H 0.086 0.914 12 C -0.550 4.550 13 H 0.076 0.924 14 C 0.065 3.935 15 N -0.839 5.839 16 Si 0.915 3.085 17 H -0.277 1.277 18 H -0.283 1.283 19 H -0.271 1.271 20 C 0.416 3.584 21 F -0.211 7.211 22 F -0.138 7.138 23 F -0.218 7.218 24 C 0.145 3.855 25 C -0.097 4.097 26 H 0.072 0.928 27 C 0.069 3.931 28 N -0.849 5.849 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.392 0.608 37 H 0.268 0.732 38 H 0.102 0.898 39 H 0.058 0.942 40 H 0.025 0.975 41 H 0.074 0.926 42 H 0.342 0.658 43 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.524 16.973 2.384 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.103 4.103 3 H 0.086 0.914 4 C -0.167 4.167 5 C -0.014 4.014 6 N -0.373 5.373 7 C 0.405 3.595 8 O -0.458 6.458 9 N -0.383 5.383 10 C 0.155 3.845 11 H 0.103 0.897 12 C -0.587 4.587 13 H 0.094 0.906 14 C -0.144 4.144 15 N -0.473 5.473 16 Si 0.741 3.259 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.196 1.196 20 C 0.359 3.641 21 F -0.193 7.193 22 F -0.119 7.119 23 F -0.200 7.200 24 C 0.022 3.978 25 C -0.117 4.117 26 H 0.091 0.909 27 C -0.062 4.062 28 N -0.379 5.379 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.097 0.903 36 H 0.228 0.772 37 H 0.078 0.922 38 H 0.121 0.879 39 H 0.076 0.924 40 H 0.043 0.957 41 H 0.093 0.907 42 H 0.155 0.845 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -6.594 15.667 2.994 17.260 hybrid contribution 0.503 0.785 -1.130 1.465 sum -6.090 16.452 1.864 17.642 Atomic orbital electron populations 1.22000 0.95170 1.02500 1.01454 1.21068 0.96026 0.98797 0.94454 0.91391 1.21937 1.01361 0.95638 0.97769 1.21599 0.99949 0.93110 0.86777 1.47264 1.61783 1.21654 1.06633 1.15974 0.78598 0.80154 0.84822 1.90898 1.56674 1.67488 1.30771 1.45434 1.66579 1.19658 1.06599 1.19587 0.87982 0.74900 1.02080 0.89673 1.20861 1.35434 1.02990 0.99461 0.90640 1.25073 0.95917 0.95249 0.98138 1.70407 1.37631 1.06276 1.32953 0.86226 0.79670 0.77675 0.82313 1.20240 1.20817 1.19576 1.23192 0.82896 0.86517 0.71446 1.92978 1.69765 1.96737 1.59776 1.93397 1.81773 1.41012 1.95685 1.93067 1.84149 1.95082 1.47655 1.21316 0.98783 0.91251 0.86485 1.21570 1.00827 0.95835 0.93447 0.90913 1.21823 0.99909 0.94634 0.89829 1.58657 1.14318 1.60765 1.04128 0.91793 0.92658 0.92751 0.90835 0.91355 0.91527 0.90276 0.77177 0.92162 0.87941 0.92389 0.95677 0.90718 0.84517 0.84858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 8.11 37.15 0.30 -0.96 16 2 C -0.08 -0.77 2.71 -90.58 -0.25 -1.01 16 3 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 4 C -0.13 -1.27 5.63 -26.61 -0.15 -1.42 16 5 C 0.11 1.35 5.92 -3.71 -0.02 1.33 16 6 N -0.63 -10.21 2.97 -178.50 -0.53 -10.74 16 7 C 0.70 14.90 7.74 -86.92 -0.67 14.23 16 8 O -0.58 -14.63 14.58 5.29 0.08 -14.55 16 9 N -0.73 -15.63 4.89 -59.81 -0.29 -15.92 16 10 C 0.26 6.68 2.22 -69.08 -0.15 6.53 16 11 H 0.09 2.46 7.51 -51.93 -0.39 2.07 16 12 C -0.55 -14.24 8.46 -34.44 -0.29 -14.54 16 13 H 0.08 1.84 7.74 -52.49 -0.41 1.44 16 14 C 0.06 1.71 5.20 -17.82 -0.09 1.61 16 15 N -0.84 -23.32 9.50 55.43 0.53 -22.79 16 16 Si 0.91 20.24 29.54 -169.99 -5.02 15.22 16 17 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 20 C 0.42 10.99 2.81 37.16 0.10 11.09 16 21 F -0.21 -5.32 16.94 2.25 0.04 -5.29 16 22 F -0.14 -3.89 12.91 2.25 0.03 -3.86 16 23 F -0.22 -5.76 15.88 2.25 0.04 -5.73 16 24 C 0.14 2.07 5.07 -3.71 -0.02 2.05 16 25 C -0.10 -1.05 2.25 -90.50 -0.20 -1.25 16 26 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 27 C 0.07 0.62 5.71 -3.83 -0.02 0.60 16 28 N -0.85 -8.02 9.20 -10.37 -0.10 -8.11 16 29 H 0.06 0.61 4.98 -51.93 -0.26 0.35 16 30 H 0.05 0.41 6.57 -51.92 -0.34 0.07 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.07 0.74 6.69 -51.93 -0.35 0.39 16 35 H 0.08 0.99 5.65 -51.93 -0.29 0.69 16 36 H 0.39 7.34 6.03 -40.82 -0.25 7.09 16 37 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.10 1.79 6.78 -51.93 -0.35 1.44 16 39 H 0.06 0.78 6.70 -51.93 -0.35 0.43 16 40 H 0.03 0.20 8.14 -51.92 -0.42 -0.23 16 41 H 0.07 0.65 6.73 -51.93 -0.35 0.30 16 42 H 0.34 3.14 8.99 -39.29 -0.35 2.79 16 43 H 0.34 2.49 9.08 -39.29 -0.36 2.13 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -31.33 340.20 -7.29 -38.62 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -5.71 Total: 9.78 kcal Atomic # 6 Polarization: 19.71 SS G_CDS: -1.47 Total: 18.25 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.39 Total: -57.56 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 9 Polarization: -14.98 SS G_CDS: 0.10 Total: -14.88 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -31.33 -7.29 -38.62 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576717752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.350 kcal (2) G-P(sol) polarization free energy of solvation -31.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds