Wall clock time and date at job start Tue Mar 31 2020 14:02:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.45331 * 2 1 4 4 C 1.53045 * 109.46056 * 240.03683 * 2 1 3 5 5 C 1.53193 * 109.31252 * 301.34579 * 4 2 1 6 6 N 1.46927 * 108.77614 * 305.36388 * 5 4 2 7 7 C 1.34770 * 120.63071 * 233.58553 * 6 5 4 8 8 O 1.21589 * 120.00465 * 174.79047 * 7 6 5 9 9 N 1.34782 * 120.00199 * 354.79573 * 7 6 5 10 10 C 1.46500 * 120.00038 * 185.03576 * 9 7 6 11 11 H 1.08996 * 109.47377 * 324.99693 * 10 9 7 12 12 C 1.50703 * 109.46805 * 204.99699 * 10 9 7 13 13 H 1.08001 * 120.00307 * 0.02562 * 12 10 9 14 14 C 1.37871 * 119.99811 * 179.97438 * 12 10 9 15 15 N 1.31520 * 120.00426 * 0.02562 * 14 12 10 16 16 Si 1.86802 * 120.00185 * 180.02562 * 14 12 10 17 17 H 1.48496 * 109.47151 * 90.00275 * 16 14 12 18 18 H 1.48497 * 109.47238 * 210.00408 * 16 14 12 19 19 H 1.48506 * 109.47005 * 330.00421 * 16 14 12 20 20 C 1.52999 * 109.47243 * 84.99974 * 10 9 7 21 21 F 1.39901 * 109.46909 * 59.99587 * 20 10 9 22 22 F 1.39892 * 109.47199 * 179.97438 * 20 10 9 23 23 F 1.39901 * 109.46928 * 299.99951 * 20 10 9 24 24 C 1.46927 * 118.73653 * 53.60574 * 6 5 4 25 25 C 1.53039 * 109.46178 * 119.97343 * 2 1 3 26 26 H 1.09002 * 109.49917 * 178.60788 * 25 2 1 27 27 C 1.53001 * 109.49623 * 298.66737 * 25 2 1 28 28 N 1.46896 * 109.47459 * 185.00091 * 27 25 2 29 29 H 1.09000 * 109.47455 * 179.97438 * 1 2 3 30 30 H 1.09008 * 109.47312 * 299.96040 * 1 2 3 31 31 H 1.09001 * 109.47242 * 59.95931 * 1 2 3 32 32 H 1.09000 * 109.49597 * 61.29584 * 4 2 1 33 33 H 1.09000 * 109.49820 * 181.39454 * 4 2 1 34 34 H 1.09002 * 109.58724 * 65.14603 * 5 4 2 35 35 H 1.08999 * 109.58750 * 185.57708 * 5 4 2 36 36 H 0.96995 * 119.99500 * 5.03309 * 9 7 6 37 37 H 0.96991 * 120.00367 * 179.97438 * 15 14 12 38 38 H 1.09004 * 109.58441 * 186.60403 * 24 6 5 39 39 H 1.09000 * 109.70219 * 66.25509 * 24 6 5 40 40 H 1.09008 * 109.47368 * 304.99970 * 27 25 2 41 41 H 1.08998 * 109.47082 * 64.99923 * 27 25 2 42 42 H 1.00902 * 111.00010 * 56.04554 * 28 27 25 43 43 H 1.00900 * 111.00170 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8929 1.0277 0.0000 4 6 2.0398 -0.7207 -1.2501 5 6 1.4995 -2.1541 -1.2644 6 7 1.8624 -2.8089 -0.0002 7 6 2.5155 -3.9878 -0.0003 8 8 2.8939 -4.4734 1.0483 9 7 2.7492 -4.6287 -1.1627 10 6 3.3598 -5.9604 -1.1551 11 1 4.0806 -6.0250 -0.3400 12 6 4.0624 -6.1983 -2.4669 13 1 4.0552 -5.4339 -3.2298 14 6 4.7153 -7.3915 -2.6927 15 7 4.7246 -8.3222 -1.7635 16 14 5.5868 -7.6862 -4.3185 17 1 6.9936 -7.2217 -4.2173 18 1 5.5661 -9.1369 -4.6353 19 1 4.8934 -6.9344 -5.3952 20 6 2.2725 -7.0189 -0.9595 21 9 1.3475 -6.9360 -2.0058 22 9 2.8556 -8.2905 -0.9528 23 9 1.6203 -6.7980 0.2583 24 6 1.4995 -2.1542 1.2641 25 6 2.0398 -0.7209 1.2500 26 1 3.1295 -0.7429 1.2382 27 6 1.5576 0.0196 2.4990 28 7 2.1447 -0.6014 3.6938 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5132 0.8904 31 1 -0.3634 0.5145 -0.8896 32 1 1.6957 -0.1933 -2.1399 33 1 3.1295 -0.7428 -1.2384 34 1 0.4145 -2.1347 -1.3674 35 1 1.9381 -2.7017 -2.0986 36 1 2.5131 -4.2082 -2.0042 37 1 5.1835 -9.1617 -1.9226 38 1 1.9381 -2.7019 2.0983 39 1 0.4148 -2.1349 1.3698 40 1 1.8654 1.0639 2.4438 41 1 0.4706 -0.0361 2.5574 42 1 3.1517 -0.6201 3.6337 43 1 1.8415 -0.1296 4.5326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576717752.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:02:31 Heat of formation + Delta-G solvation = -188.392529 kcal Electronic energy + Delta-G solvation = -29876.815424 eV Core-core repulsion = 25348.561777 eV Total energy + Delta-G solvation = -4528.253647 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.41534 -48.05148 -47.72437 -41.56771 -39.49461 -36.51841 -36.00559 -34.50121 -34.08845 -31.56667 -30.20847 -28.38663 -26.62705 -26.01138 -25.55825 -23.36477 -22.67164 -21.32846 -20.14069 -19.09560 -18.89570 -18.68436 -18.60949 -17.66496 -17.03615 -16.95394 -16.55752 -16.14157 -15.99434 -15.68325 -15.40281 -15.04616 -14.98810 -14.67138 -14.48446 -14.43365 -14.38856 -14.29285 -14.12949 -14.00159 -13.83931 -13.38592 -13.08677 -12.97310 -12.75572 -12.70083 -12.60278 -12.43628 -12.20095 -12.00306 -11.69813 -11.57725 -11.35234 -11.23774 -11.03886 -10.67348 -10.14215 -9.54584 -9.35042 -8.19936 -6.51273 1.46709 1.48591 1.59273 1.69755 2.13227 2.37415 2.56068 2.95166 3.01109 3.56390 3.76151 3.78720 3.86212 3.88552 4.02461 4.09389 4.19417 4.27838 4.40230 4.50375 4.54798 4.65235 4.75559 4.77875 4.85030 4.94968 4.98257 5.06202 5.16160 5.20325 5.28358 5.40538 5.45176 5.51596 5.58668 5.66236 5.71331 6.06780 6.29159 6.53665 6.63467 7.07841 7.19290 7.65312 8.73137 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.019069 B = 0.003894 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1468.009524 B = 7188.639948 C = 7660.262912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.079 4.079 3 H 0.089 0.911 4 C -0.123 4.123 5 C 0.100 3.900 6 N -0.625 5.625 7 C 0.695 3.305 8 O -0.630 6.630 9 N -0.721 5.721 10 C 0.270 3.730 11 H 0.043 0.957 12 C -0.560 4.560 13 H 0.091 0.909 14 C 0.014 3.986 15 N -0.875 5.875 16 Si 0.985 3.015 17 H -0.270 1.270 18 H -0.284 1.284 19 H -0.257 1.257 20 C 0.413 3.587 21 F -0.203 7.203 22 F -0.150 7.150 23 F -0.221 7.221 24 C 0.144 3.856 25 C -0.089 4.089 26 H 0.054 0.946 27 C 0.074 3.926 28 N -0.867 5.867 29 H 0.048 0.952 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.103 0.897 33 H 0.055 0.945 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.406 0.594 37 H 0.269 0.731 38 H 0.064 0.936 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.081 0.919 42 H 0.341 0.659 43 H 0.351 0.649 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.354 19.592 0.465 20.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.098 4.098 3 H 0.108 0.892 4 C -0.161 4.161 5 C -0.022 4.022 6 N -0.363 5.363 7 C 0.397 3.603 8 O -0.511 6.511 9 N -0.378 5.378 10 C 0.162 3.838 11 H 0.061 0.939 12 C -0.597 4.597 13 H 0.109 0.891 14 C -0.191 4.191 15 N -0.509 5.509 16 Si 0.808 3.192 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.181 1.181 20 C 0.357 3.643 21 F -0.184 7.184 22 F -0.131 7.131 23 F -0.203 7.203 24 C 0.021 3.979 25 C -0.109 4.109 26 H 0.073 0.927 27 C -0.057 4.057 28 N -0.398 5.398 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.089 0.911 32 H 0.122 0.878 33 H 0.074 0.926 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.245 0.755 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.099 0.901 42 H 0.154 0.846 43 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.468 18.368 1.056 19.857 hybrid contribution 0.704 0.001 -0.464 0.843 sum -6.765 18.369 0.592 19.584 Atomic orbital electron populations 1.21973 0.94062 1.01903 1.02866 1.21075 0.96816 0.99322 0.92612 0.89247 1.21932 1.00560 0.94032 0.99613 1.21947 1.01303 0.94372 0.84562 1.47341 1.59971 1.19998 1.08943 1.16213 0.78855 0.81392 0.83868 1.90859 1.58724 1.69190 1.32320 1.45172 1.66555 1.18438 1.07586 1.19166 0.87285 0.76592 1.00805 0.93890 1.21192 1.35374 1.03540 0.99584 0.89084 1.26024 0.96433 0.94906 1.01707 1.70542 1.38576 1.06761 1.35056 0.85132 0.78590 0.77418 0.78013 1.19562 1.20959 1.18086 1.23345 0.83200 0.86297 0.71470 1.92977 1.69446 1.96685 1.59335 1.93371 1.82066 1.41939 1.95756 1.93056 1.84213 1.95062 1.47973 1.21411 0.99249 0.92761 0.84443 1.21503 0.99612 0.93862 0.95875 0.92746 1.21799 1.00135 0.95191 0.88545 1.58664 1.14442 1.61583 1.05084 0.93308 0.91611 0.91101 0.87847 0.92618 0.89577 0.90544 0.75479 0.92155 0.91719 0.91194 0.93607 0.90070 0.84622 0.83556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.11 71.98 0.58 -1.34 16 2 C -0.08 -1.19 2.71 -10.77 -0.03 -1.22 16 3 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.12 -2.08 5.63 30.67 0.17 -1.91 16 5 C 0.10 2.29 5.92 86.36 0.51 2.80 16 6 N -0.63 -20.08 2.97 -836.91 -2.49 -22.57 16 7 C 0.70 30.34 7.74 179.05 1.39 31.73 16 8 O -0.63 -33.44 14.58 -4.00 -0.06 -33.50 16 9 N -0.72 -31.45 4.89 -461.41 -2.26 -33.71 16 10 C 0.27 14.19 2.22 44.25 0.10 14.29 16 11 H 0.04 2.63 7.51 -2.39 -0.02 2.62 16 12 C -0.56 -29.00 8.46 25.60 0.22 -28.78 16 13 H 0.09 4.32 7.74 -2.91 -0.02 4.30 16 14 C 0.01 0.76 5.20 84.65 0.44 1.20 16 15 N -0.88 -49.55 9.50 21.45 0.20 -49.35 16 16 Si 0.99 40.92 29.54 68.60 2.03 42.94 16 17 H -0.27 -10.89 7.11 99.48 0.71 -10.19 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.26 -10.02 7.11 99.48 0.71 -9.32 16 20 C 0.41 22.35 2.81 71.98 0.20 22.55 16 21 F -0.20 -10.24 16.94 44.97 0.76 -9.48 16 22 F -0.15 -8.74 12.91 44.97 0.58 -8.16 16 23 F -0.22 -12.08 15.88 44.97 0.71 -11.37 16 24 C 0.14 4.12 5.07 86.36 0.44 4.55 16 25 C -0.09 -1.80 2.25 -10.72 -0.02 -1.83 16 26 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 27 C 0.07 1.19 5.71 86.30 0.49 1.68 16 28 N -0.87 -15.89 9.20 -186.72 -1.72 -17.60 16 29 H 0.05 0.78 4.98 -2.39 -0.01 0.77 16 30 H 0.06 0.72 6.57 -2.38 -0.02 0.70 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 32 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.68 6.69 -2.39 -0.02 1.66 16 35 H 0.08 1.78 5.65 -2.39 -0.01 1.76 16 36 H 0.41 15.02 6.03 -92.71 -0.56 14.46 16 37 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 38 H 0.06 2.37 6.78 -2.39 -0.02 2.35 16 39 H 0.07 1.83 6.70 -2.39 -0.02 1.81 16 40 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 41 H 0.08 1.21 6.73 -2.39 -0.02 1.20 16 42 H 0.34 6.29 8.99 -89.69 -0.81 5.49 16 43 H 0.35 4.82 9.08 -89.69 -0.81 4.00 16 Total: -1.00 -70.21 340.20 1.16 -69.05 By element: Atomic # 1 Polarization: 31.10 SS G_CDS: -1.09 Total: 30.01 kcal Atomic # 6 Polarization: 39.24 SS G_CDS: 4.49 Total: 43.73 kcal Atomic # 7 Polarization: -116.96 SS G_CDS: -6.26 Total: -123.22 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -0.06 Total: -33.50 kcal Atomic # 9 Polarization: -31.06 SS G_CDS: 2.06 Total: -29.01 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.94 kcal Total: -70.21 1.16 -69.05 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576717752.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.345 kcal (2) G-P(sol) polarization free energy of solvation -70.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds