Wall clock time and date at job start Tue Mar 31 2020 14:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09006 * 110.30402 * 2 1 4 4 C 1.54391 * 110.34535 * 237.71112 * 2 1 3 5 5 N 1.48149 * 104.61518 * 217.26019 * 4 2 1 6 6 C 1.34776 * 127.83768 * 219.55938 * 5 4 2 7 7 O 1.21583 * 120.00264 * 180.02562 * 6 5 4 8 8 N 1.34780 * 119.99876 * 0.03120 * 6 5 4 9 9 C 1.46496 * 119.99801 * 179.97438 * 8 6 5 10 10 H 1.09002 * 109.47209 * 34.99695 * 9 8 6 11 11 C 1.50696 * 109.47146 * 155.00084 * 9 8 6 12 12 H 1.07998 * 120.00159 * 114.76153 * 11 9 8 13 13 C 1.37882 * 120.00159 * 294.76442 * 11 9 8 14 14 N 1.31505 * 120.00127 * 184.89274 * 13 11 9 15 15 Si 1.86801 * 119.99538 * 4.89168 * 13 11 9 16 16 H 1.48504 * 109.47111 * 84.91227 * 15 13 11 17 17 H 1.48500 * 109.46818 * 204.90880 * 15 13 11 18 18 H 1.48493 * 109.47264 * 324.90965 * 15 13 11 19 19 C 1.52999 * 109.47308 * 275.00114 * 9 8 6 20 20 F 1.39903 * 109.47266 * 65.01387 * 19 9 8 21 21 F 1.39906 * 109.47273 * 185.01750 * 19 9 8 22 22 F 1.39904 * 109.46987 * 305.01620 * 19 9 8 23 23 C 1.48143 * 104.32345 * 39.58500 * 5 4 2 24 24 C 1.54285 * 110.34454 * 122.16934 * 2 1 3 25 25 H 1.09002 * 110.33894 * 0.02562 * 24 2 1 26 26 C 1.52998 * 110.34514 * 237.85251 * 24 2 1 27 27 C 1.53007 * 109.47077 * 175.00220 * 26 24 2 28 28 N 1.46897 * 109.47088 * 179.97438 * 27 26 24 29 29 H 1.08993 * 109.47214 * 297.82918 * 1 2 3 30 30 H 1.09004 * 109.47010 * 57.82597 * 1 2 3 31 31 H 1.08998 * 109.46895 * 177.82739 * 1 2 3 32 32 H 1.08995 * 110.40617 * 336.04424 * 4 2 1 33 33 H 1.09000 * 110.40838 * 98.48115 * 4 2 1 34 34 H 0.96998 * 119.99842 * 359.97438 * 8 6 5 35 35 H 0.97006 * 120.00289 * 179.97438 * 14 13 11 36 36 H 1.08999 * 110.41024 * 201.62301 * 23 5 4 37 37 H 1.09003 * 110.50791 * 79.24409 * 23 5 4 38 38 H 1.08997 * 109.47044 * 294.99582 * 26 24 2 39 39 H 1.08993 * 109.47127 * 54.99826 * 26 24 2 40 40 H 1.08997 * 109.46663 * 299.99595 * 27 26 24 41 41 H 1.09001 * 109.47290 * 59.99566 * 27 26 24 42 42 H 1.00894 * 111.00151 * 179.97438 * 28 27 26 43 43 H 1.00902 * 111.00120 * 303.94805 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0668 -0.7733 -1.2237 5 7 3.2665 -1.4823 -0.7211 6 6 4.4424 -1.6680 -1.3529 7 8 5.3388 -2.2776 -0.8023 8 7 4.6247 -1.1779 -2.5951 9 6 5.9030 -1.3793 -3.2817 10 1 6.3105 -2.3537 -3.0125 11 6 5.6878 -1.3191 -4.7720 12 1 6.1323 -0.5225 -5.3501 13 6 4.9232 -2.2810 -5.3976 14 7 4.8142 -2.2846 -6.7081 15 14 4.0424 -3.5791 -4.3834 16 1 2.7371 -3.0436 -3.9199 17 1 3.8142 -4.7872 -5.2162 18 1 4.8756 -3.9384 -3.2079 19 6 6.8848 -0.2829 -2.8636 20 9 7.1731 -0.4100 -1.5005 21 9 8.0656 -0.4072 -3.6036 22 9 6.3135 0.9713 -3.1043 23 6 2.8802 -1.9414 0.6334 24 6 2.0664 -0.7702 1.2245 25 1 1.2398 -1.1489 1.8258 26 6 2.9670 0.1337 2.0687 27 6 3.3867 -0.6081 3.3395 28 7 4.2519 0.2595 4.1498 29 1 -0.3633 0.4797 0.9087 30 1 -0.3633 0.5472 -0.8699 31 1 -0.3633 -1.0269 -0.0390 32 1 1.3236 -1.4877 -1.5778 33 1 2.3402 -0.0815 -2.0205 34 1 3.9094 -0.6918 -3.0345 35 1 4.2766 -2.9615 -7.1482 36 1 3.7672 -2.1312 1.2378 37 1 2.2646 -2.8388 0.5713 38 1 3.8541 0.4011 1.4946 39 1 2.4228 1.0385 2.3391 40 1 2.4996 -0.8755 3.9137 41 1 3.9309 -1.5129 3.0691 42 1 4.5424 -0.2078 4.9955 43 1 5.0496 0.5734 3.6175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001579432034.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:55 Heat of formation + Delta-G solvation = -212.715374 kcal Electronic energy + Delta-G solvation = -29798.970468 eV Core-core repulsion = 25269.662103 eV Total energy + Delta-G solvation = -4529.308365 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -50.91794 -48.42306 -48.40277 -41.44280 -39.50049 -36.70037 -36.24204 -34.52174 -33.79883 -31.95325 -30.79962 -27.76736 -27.17268 -26.97470 -24.74602 -23.22206 -22.09782 -21.09161 -20.77151 -20.17531 -19.36607 -19.07355 -18.57607 -18.38659 -17.20136 -17.12280 -16.75908 -16.40980 -15.91779 -15.50903 -15.32855 -15.28674 -15.20544 -14.87708 -14.87370 -14.78900 -14.60579 -14.58230 -14.53288 -14.30599 -13.78855 -13.60321 -13.26585 -13.17772 -12.99399 -12.97011 -12.59137 -12.42543 -12.25236 -12.13749 -11.88845 -11.58025 -11.50147 -11.38895 -11.35179 -11.01432 -10.32628 -9.65535 -9.60849 -8.56824 -6.75034 1.18967 1.29501 1.41528 1.49748 1.86648 2.12094 2.23194 2.69066 3.03678 3.18373 3.33532 3.44019 3.53881 3.58385 3.67964 3.96039 4.15308 4.24866 4.33482 4.42904 4.44416 4.54374 4.61625 4.66150 4.69493 4.80577 4.89918 4.94265 4.97495 5.09322 5.18829 5.24742 5.29726 5.36470 5.38448 5.57781 5.81835 6.09048 6.16603 6.39210 6.51291 6.94844 6.96514 7.50277 8.55263 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.005165 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.434119 B = 5420.297479 C = 6559.012647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.092 4.092 3 H 0.080 0.920 4 C 0.093 3.907 5 N -0.646 5.646 6 C 0.711 3.289 7 O -0.624 6.624 8 N -0.729 5.729 9 C 0.231 3.769 10 H 0.074 0.926 11 C -0.540 4.540 12 H 0.067 0.933 13 C 0.065 3.935 14 N -0.899 5.899 15 Si 0.935 3.065 16 H -0.249 1.249 17 H -0.286 1.286 18 H -0.277 1.277 19 C 0.445 3.555 20 F -0.191 7.191 21 F -0.186 7.186 22 F -0.185 7.185 23 C 0.118 3.882 24 C -0.084 4.084 25 H 0.117 0.883 26 C -0.101 4.101 27 C 0.060 3.940 28 N -0.859 5.859 29 H 0.073 0.927 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.404 0.596 35 H 0.280 0.720 36 H 0.064 0.936 37 H 0.079 0.921 38 H 0.034 0.966 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.018 0.982 42 H 0.349 0.651 43 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.132 3.440 16.461 20.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.111 4.111 3 H 0.098 0.902 4 C -0.029 4.029 5 N -0.383 5.383 6 C 0.413 3.587 7 O -0.505 6.505 8 N -0.386 5.386 9 C 0.125 3.875 10 H 0.091 0.909 11 C -0.578 4.578 12 H 0.085 0.915 13 C -0.142 4.142 14 N -0.533 5.533 15 Si 0.760 3.240 16 H -0.173 1.173 17 H -0.213 1.213 18 H -0.202 1.202 19 C 0.389 3.611 20 F -0.173 7.173 21 F -0.167 7.167 22 F -0.167 7.167 23 C -0.005 4.005 24 C -0.104 4.104 25 H 0.135 0.865 26 C -0.139 4.139 27 C -0.070 4.070 28 N -0.389 5.389 29 H 0.092 0.908 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.242 0.758 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.098 0.902 40 H 0.105 0.895 41 H 0.036 0.964 42 H 0.162 0.838 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -11.076 3.405 16.676 20.307 hybrid contribution 0.805 -0.953 -0.465 1.331 sum -10.271 2.452 16.211 19.347 Atomic orbital electron populations 1.21791 0.91754 1.02794 1.03007 1.22111 0.97600 0.99037 0.92376 0.90156 1.22762 0.86224 0.95873 0.98078 1.48180 1.11977 1.59316 1.18855 1.15885 0.81883 0.79585 0.81299 1.90852 1.43203 1.48736 1.67704 1.46407 1.17382 1.59845 1.14967 1.19783 0.81476 0.92716 0.93481 0.90860 1.20736 1.35164 1.13970 0.87900 0.91459 1.25432 0.95335 0.97976 0.95419 1.69935 1.38434 1.35516 1.09464 0.85946 0.80555 0.78961 0.78503 1.17341 1.21251 1.20197 1.21371 0.81762 0.84154 0.73827 1.93151 1.94248 1.95994 1.33869 1.93103 1.50329 1.96031 1.77286 1.93081 1.84689 1.44772 1.94158 1.22493 0.98888 0.97737 0.81341 1.22192 0.97982 0.94277 0.95948 0.86524 1.21524 0.98734 0.98879 0.94763 1.21868 0.97468 0.93483 0.94229 1.58787 1.25137 1.44602 1.10336 0.90789 0.91929 0.91723 0.89935 0.90825 0.75809 0.90988 0.91720 0.90260 0.94709 0.90217 0.89541 0.96361 0.83843 0.84886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.92 71.98 0.64 -0.93 16 2 C -0.09 -1.55 3.31 -9.89 -0.03 -1.58 16 3 H 0.08 1.44 7.71 -2.38 -0.02 1.42 16 4 C 0.09 2.17 6.46 86.53 0.56 2.73 16 5 N -0.65 -20.25 3.32 -825.90 -2.74 -22.99 16 6 C 0.71 29.35 7.77 179.05 1.39 30.74 16 7 O -0.62 -30.18 15.18 -3.98 -0.06 -30.24 16 8 N -0.73 -30.72 2.86 -461.42 -1.32 -32.04 16 9 C 0.23 11.01 1.42 44.24 0.06 11.07 16 10 H 0.07 3.79 6.52 -2.39 -0.02 3.77 16 11 C -0.54 -28.38 8.65 25.60 0.22 -28.16 16 12 H 0.07 3.88 7.95 -2.91 -0.02 3.86 16 13 C 0.06 3.41 5.47 84.66 0.46 3.87 16 14 N -0.90 -50.01 13.96 21.45 0.30 -49.71 16 15 Si 0.93 42.41 25.78 68.60 1.77 44.18 16 16 H -0.25 -10.24 7.11 99.48 0.71 -9.54 16 17 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 18 H -0.28 -13.47 6.57 99.48 0.65 -12.82 16 19 C 0.44 20.27 2.79 71.98 0.20 20.47 16 20 F -0.19 -8.68 15.83 44.97 0.71 -7.96 16 21 F -0.19 -8.57 16.86 44.97 0.76 -7.81 16 22 F -0.19 -8.09 16.97 44.97 0.76 -7.33 16 23 C 0.12 2.89 6.45 86.53 0.56 3.44 16 24 C -0.08 -1.43 2.71 -9.89 -0.03 -1.46 16 25 H 0.12 1.36 7.71 -2.39 -0.02 1.34 16 26 C -0.10 -1.91 4.69 30.60 0.14 -1.77 16 27 C 0.06 1.06 6.64 86.31 0.57 1.63 16 28 N -0.86 -15.25 9.62 -186.71 -1.80 -17.05 16 29 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.69 8.10 -2.39 -0.02 0.67 16 32 H 0.08 1.74 7.83 -2.39 -0.02 1.73 16 33 H 0.07 1.77 6.87 -2.39 -0.02 1.75 16 34 H 0.40 15.63 6.98 -92.71 -0.65 14.98 16 35 H 0.28 14.46 8.31 -92.70 -0.77 13.69 16 36 H 0.06 1.83 6.15 -2.39 -0.01 1.82 16 37 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.03 0.87 8.13 -2.39 -0.02 0.85 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.02 0.37 6.67 -2.39 -0.02 0.35 16 42 H 0.35 4.98 9.08 -89.70 -0.81 4.17 16 43 H 0.34 6.37 8.99 -89.69 -0.81 5.57 16 Total: -1.00 -65.60 354.16 1.89 -63.71 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: -1.25 Total: 27.17 kcal Atomic # 6 Polarization: 35.31 SS G_CDS: 4.76 Total: 40.06 kcal Atomic # 7 Polarization: -116.23 SS G_CDS: -5.56 Total: -121.79 kcal Atomic # 8 Polarization: -30.18 SS G_CDS: -0.06 Total: -30.24 kcal Atomic # 9 Polarization: -25.33 SS G_CDS: 2.23 Total: -23.10 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 1.77 Total: 44.18 kcal Total: -65.60 1.89 -63.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579432034.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.010 kcal (2) G-P(sol) polarization free energy of solvation -65.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -212.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds