Wall clock time and date at job start Tue Mar 31 2020 14:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09003 * 110.66016 * 2 1 4 4 C 1.54602 * 110.83468 * 236.74977 * 2 1 3 5 5 N 1.48119 * 103.42383 * 204.44408 * 4 2 1 6 6 C 1.34772 * 127.03238 * 219.28717 * 5 4 2 7 7 O 1.21591 * 119.99618 * 179.68897 * 6 5 4 8 8 N 1.34777 * 119.99991 * 359.68728 * 6 5 4 9 9 C 1.46503 * 119.99573 * 179.97438 * 8 6 5 10 10 H 1.08995 * 109.47381 * 325.00028 * 9 8 6 11 11 C 1.50702 * 109.47070 * 204.99794 * 9 8 6 12 12 H 1.08000 * 120.00278 * 274.94512 * 11 9 8 13 13 C 1.37878 * 119.99632 * 94.94161 * 11 9 8 14 14 N 1.31518 * 119.99565 * 184.87967 * 13 11 9 15 15 Si 1.86793 * 120.00273 * 4.88044 * 13 11 9 16 16 H 1.48507 * 109.47203 * 84.80769 * 15 13 11 17 17 H 1.48498 * 109.47140 * 204.80615 * 15 13 11 18 18 H 1.48496 * 109.47327 * 324.81123 * 15 13 11 19 19 C 1.53000 * 109.47070 * 85.00101 * 9 8 6 20 20 F 1.39896 * 109.47457 * 54.93565 * 19 9 8 21 21 F 1.39904 * 109.47364 * 174.93334 * 19 9 8 22 22 F 1.39901 * 109.47351 * 294.93384 * 19 9 8 23 23 C 1.47484 * 105.93074 * 39.02724 * 5 4 2 24 24 C 1.53999 * 107.08455 * 334.77835 * 23 5 4 25 25 H 1.09001 * 110.32858 * 120.19939 * 24 23 5 26 26 C 1.53007 * 110.32496 * 242.41545 * 24 23 5 27 27 C 1.52998 * 109.46875 * 293.54053 * 26 24 23 28 28 N 1.46904 * 109.47387 * 179.97438 * 27 26 24 29 29 H 1.08994 * 109.46979 * 296.80792 * 1 2 3 30 30 H 1.08996 * 109.46975 * 56.80907 * 1 2 3 31 31 H 1.09006 * 109.46837 * 176.80902 * 1 2 3 32 32 H 1.09004 * 110.61083 * 85.93538 * 4 2 1 33 33 H 1.08991 * 110.54814 * 322.92928 * 4 2 1 34 34 H 0.96995 * 120.00495 * 359.97438 * 8 6 5 35 35 H 0.97001 * 119.99481 * 180.02562 * 14 13 11 36 36 H 1.09005 * 109.91060 * 94.13813 * 23 5 4 37 37 H 1.08998 * 109.91317 * 215.21948 * 23 5 4 38 38 H 1.08994 * 109.47383 * 53.54748 * 26 24 23 39 39 H 1.09008 * 109.46866 * 173.54753 * 26 24 23 40 40 H 1.08994 * 109.47683 * 300.00512 * 27 26 24 41 41 H 1.09008 * 109.46801 * 60.00661 * 27 26 24 42 42 H 1.00891 * 111.00133 * 180.02562 * 28 27 26 43 43 H 1.00899 * 110.99906 * 303.96085 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9146 1.0199 0.0000 4 6 2.0799 -0.7922 -1.2084 5 7 3.4280 -1.2113 -0.7601 6 6 4.5539 -1.2497 -1.5000 7 8 5.5998 -1.6122 -0.9968 8 7 4.5203 -0.8865 -2.7974 9 6 5.7444 -0.9278 -3.6014 10 1 6.5972 -0.6570 -2.9791 11 6 5.6274 0.0468 -4.7449 12 1 5.1399 -0.2517 -5.6612 13 6 6.1427 1.3197 -4.6212 14 7 5.9570 2.2003 -5.5803 15 14 7.1045 1.7934 -3.0916 16 1 8.5229 1.3841 -3.2522 17 1 7.0326 3.2639 -2.8974 18 1 6.5227 1.1089 -1.9093 19 6 5.9442 -2.3405 -4.1539 20 9 4.8001 -2.7325 -4.8570 21 9 7.0474 -2.3531 -5.0142 22 9 6.1680 -3.2278 -3.0956 23 6 3.2876 -1.5717 0.6631 24 6 2.0776 -0.7916 1.2100 25 1 1.3211 -1.4807 1.5854 26 6 2.5201 0.1680 2.3166 27 6 3.0094 -0.6358 3.5230 28 7 3.4349 0.2854 4.5853 29 1 -0.3633 0.4635 0.9172 30 1 -0.3633 0.5626 -0.8600 31 1 -0.3633 -1.0261 -0.0572 32 1 2.1488 -0.1519 -2.0878 33 1 1.4549 -1.6616 -1.4123 34 1 3.6859 -0.5977 -3.1989 35 1 6.3198 3.0956 -5.4934 36 1 3.1126 -2.6433 0.7591 37 1 4.1897 -1.2928 1.2075 38 1 3.3286 0.7992 1.9483 39 1 1.6778 0.7928 2.6139 40 1 2.2009 -1.2671 3.8913 41 1 3.8517 -1.2607 3.2258 42 1 3.7631 -0.2215 5.3935 43 1 4.1395 0.9245 4.2489 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001579432036.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:06:58 Heat of formation + Delta-G solvation = -196.704036 kcal Electronic energy + Delta-G solvation = -29350.624524 eV Core-core repulsion = 24822.010463 eV Total energy + Delta-G solvation = -4528.614061 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.01185 -46.53244 -46.49498 -40.06417 -38.12723 -35.44646 -34.74105 -32.90232 -32.43562 -31.12430 -29.12668 -26.63398 -26.22868 -24.93236 -23.66439 -21.51443 -21.01477 -20.04208 -19.52300 -18.44561 -17.49416 -17.33241 -16.65389 -16.49571 -16.35480 -16.01107 -15.34827 -14.89760 -14.67286 -14.31163 -14.22233 -13.62141 -13.52453 -13.42382 -13.21737 -13.07169 -12.96665 -12.87900 -12.71044 -12.67549 -12.58448 -12.47822 -12.28019 -11.99949 -11.86966 -11.63800 -11.41171 -11.15280 -10.75106 -10.70193 -10.66591 -10.56932 -10.14321 -9.81052 -9.63204 -8.99329 -8.95385 -8.57601 -8.14180 -6.55027 -4.69885 2.95100 3.14749 3.19944 3.31087 3.64036 3.99856 4.10113 4.20150 4.30017 4.42248 4.55963 4.70568 4.91056 4.98384 5.09695 5.14447 5.22380 5.26564 5.32309 5.36234 5.40908 5.44011 5.46618 5.52780 5.66469 5.75633 5.82096 5.91907 6.00281 6.03782 6.06638 6.16902 6.29818 6.53571 6.84805 6.90324 7.14681 7.23437 7.53313 7.91138 8.50766 8.61196 9.01458 9.18688 10.53211 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013098 B = 0.004327 C = 0.004065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.224053 B = 6469.183964 C = 6887.046091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.101 4.101 3 H 0.084 0.916 4 C 0.104 3.896 5 N -0.644 5.644 6 C 0.713 3.287 7 O -0.591 6.591 8 N -0.725 5.725 9 C 0.221 3.779 10 H 0.088 0.912 11 C -0.535 4.535 12 H 0.094 0.906 13 C 0.101 3.899 14 N -0.859 5.859 15 Si 0.867 3.133 16 H -0.265 1.265 17 H -0.280 1.280 18 H -0.253 1.253 19 C 0.436 3.564 20 F -0.193 7.193 21 F -0.182 7.182 22 F -0.195 7.195 23 C 0.129 3.871 24 C -0.096 4.096 25 H 0.085 0.915 26 C -0.108 4.108 27 C 0.057 3.943 28 N -0.854 5.854 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.395 0.605 35 H 0.275 0.725 36 H 0.058 0.942 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.031 0.969 42 H 0.340 0.660 43 H 0.341 0.659 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.770 -3.615 13.297 16.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.102 0.898 4 C -0.020 4.020 5 N -0.383 5.383 6 C 0.416 3.584 7 O -0.470 6.470 8 N -0.381 5.381 9 C 0.117 3.883 10 H 0.106 0.894 11 C -0.573 4.573 12 H 0.112 0.888 13 C -0.109 4.109 14 N -0.491 5.491 15 Si 0.692 3.308 16 H -0.190 1.190 17 H -0.206 1.206 18 H -0.177 1.177 19 C 0.380 3.620 20 F -0.175 7.175 21 F -0.164 7.164 22 F -0.176 7.176 23 C 0.005 3.995 24 C -0.116 4.116 25 H 0.104 0.896 26 C -0.146 4.146 27 C -0.074 4.074 28 N -0.383 5.383 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.076 0.924 32 H 0.098 0.902 33 H 0.088 0.912 34 H 0.231 0.769 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.049 0.951 42 H 0.152 0.848 43 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -9.590 -3.487 13.483 16.909 hybrid contribution 1.051 -0.234 0.261 1.108 sum -8.539 -3.721 13.745 16.603 Atomic orbital electron populations 1.21734 0.93878 1.02057 1.02099 1.22269 0.95919 0.99767 0.94112 0.89786 1.22465 0.83707 0.98261 0.97530 1.47926 1.07499 1.71635 1.11257 1.15909 0.82234 0.78295 0.81936 1.90878 1.28976 1.54972 1.72140 1.46747 1.13737 1.69672 1.07905 1.19880 0.87756 0.87540 0.93155 0.89398 1.20752 1.41144 0.96321 0.99048 0.88849 1.24983 0.94013 0.95549 0.96333 1.69862 1.41498 1.05089 1.32682 0.86945 0.81635 0.78281 0.83977 1.18997 1.20585 1.17689 1.21795 0.73310 0.91187 0.75716 1.93057 1.51504 1.92718 1.80235 1.93103 1.54694 1.96994 1.71613 1.93146 1.94602 1.72599 1.57293 1.21875 0.98127 0.98148 0.81386 1.22183 0.97078 0.97265 0.95072 0.89645 1.21617 1.01629 0.97732 0.93621 1.21883 0.99397 0.94406 0.91686 1.58757 1.47678 1.22632 1.09253 0.92286 0.92178 0.92397 0.90152 0.91223 0.76855 0.91443 0.92401 0.90865 0.91790 0.90847 0.91084 0.95101 0.84804 0.84676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.09 9.16 37.16 0.34 -0.75 16 2 C -0.10 -1.02 3.19 -88.92 -0.28 -1.30 16 3 H 0.08 0.93 7.86 -51.93 -0.41 0.52 16 4 C 0.10 1.28 6.37 -2.31 -0.01 1.27 16 5 N -0.64 -10.46 3.29 -175.69 -0.58 -11.03 16 6 C 0.71 14.97 8.19 -86.92 -0.71 14.26 16 7 O -0.59 -14.44 15.25 5.29 0.08 -14.36 16 8 N -0.73 -15.34 4.88 -59.81 -0.29 -15.63 16 9 C 0.22 5.25 1.71 -69.08 -0.12 5.13 16 10 H 0.09 2.23 4.73 -51.93 -0.25 1.99 16 11 C -0.54 -13.80 8.52 -34.44 -0.29 -14.09 16 12 H 0.09 2.59 8.00 -52.49 -0.42 2.17 16 13 C 0.10 2.66 5.47 -17.82 -0.10 2.57 16 14 N -0.86 -23.56 13.96 55.43 0.77 -22.78 16 15 Si 0.87 20.44 26.99 -169.99 -4.59 15.85 16 16 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.25 -6.16 6.82 56.52 0.39 -5.77 16 19 C 0.44 10.06 2.83 37.16 0.11 10.17 16 20 F -0.19 -4.28 16.93 2.25 0.04 -4.24 16 21 F -0.18 -4.25 16.89 2.25 0.04 -4.21 16 22 F -0.19 -4.52 15.83 2.25 0.04 -4.48 16 23 C 0.13 1.71 6.15 -2.98 -0.02 1.69 16 24 C -0.10 -0.94 2.62 -89.24 -0.23 -1.18 16 25 H 0.09 0.71 7.85 -51.93 -0.41 0.30 16 26 C -0.11 -1.04 4.67 -26.73 -0.12 -1.16 16 27 C 0.06 0.51 6.61 -3.82 -0.03 0.49 16 28 N -0.85 -7.38 9.62 -10.37 -0.10 -7.48 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.42 8.10 -51.93 -0.42 -0.01 16 32 H 0.08 1.01 6.83 -51.93 -0.35 0.65 16 33 H 0.07 0.76 8.01 -51.93 -0.42 0.35 16 34 H 0.40 7.57 6.93 -40.82 -0.28 7.29 16 35 H 0.28 7.05 8.31 -40.82 -0.34 6.71 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.07 1.08 6.64 -51.93 -0.34 0.74 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.03 0.30 6.88 -51.92 -0.36 -0.06 16 42 H 0.34 2.40 9.08 -39.30 -0.36 2.04 16 43 H 0.34 2.85 8.99 -39.29 -0.35 2.49 16 LS Contribution 357.24 15.07 5.38 5.38 Total: -1.00 -30.54 357.24 -6.74 -37.28 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: -6.06 Total: 8.62 kcal Atomic # 6 Polarization: 18.57 SS G_CDS: -1.48 Total: 17.09 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: -0.20 Total: -56.93 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 9 Polarization: -13.04 SS G_CDS: 0.11 Total: -12.93 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -4.59 Total: 15.85 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.54 -6.74 -37.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001579432036.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -159.427 kcal (2) G-P(sol) polarization free energy of solvation -30.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -189.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds