Wall clock time and date at job start Tue Mar 31 2020 14:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.60818 * 2 1 4 4 C 1.53371 * 109.61168 * 239.65464 * 2 1 3 5 5 N 1.46967 * 108.63336 * 190.83226 * 4 2 1 6 6 C 1.34777 * 120.59186 * 235.20260 * 5 4 2 7 7 O 1.21281 * 120.00178 * 6.26476 * 6 5 4 8 8 C 1.50703 * 120.00234 * 186.25868 * 6 5 4 9 9 C 1.52995 * 109.46610 * 57.44856 * 8 6 5 10 10 C 1.47202 * 109.47029 * 297.45253 * 8 6 5 11 11 N 5.00243 * 141.56738 * 355.87085 * 3 1 2 12 12 C 1.52997 * 109.47429 * 177.44989 * 8 6 5 13 13 C 1.50698 * 109.47100 * 180.02562 * 12 8 6 14 14 O 1.20817 * 119.99941 * 0.02562 * 13 12 8 15 15 O 1.34224 * 119.99832 * 180.02562 * 13 12 8 16 16 C 1.46957 * 118.81498 * 55.48031 * 5 4 2 17 17 C 1.53816 * 108.39982 * 304.48370 * 16 5 4 18 18 H 1.08992 * 109.68059 * 169.38533 * 17 16 5 19 19 C 1.53004 * 109.74113 * 289.85078 * 17 16 5 20 20 N 1.46967 * 108.58006 * 49.63201 * 17 16 5 21 21 C 1.36932 * 120.59282 * 124.62642 * 20 17 16 22 22 H 1.08003 * 120.00038 * 209.02448 * 21 20 17 23 23 C 1.38811 * 120.00239 * 29.02296 * 21 20 17 24 24 N 1.31620 * 119.99862 * 7.87309 * 23 21 20 25 25 Si 1.86800 * 120.00385 * 187.87674 * 23 21 20 26 26 H 1.48501 * 109.47277 * 89.99861 * 25 23 21 27 27 H 1.48507 * 109.47022 * 210.00080 * 25 23 21 28 28 H 1.48505 * 109.47012 * 329.99672 * 25 23 21 29 29 H 1.08998 * 109.47167 * 180.34215 * 1 2 3 30 30 H 1.08998 * 109.47535 * 300.34542 * 1 2 3 31 31 H 1.08996 * 109.47283 * 60.34450 * 1 2 3 32 32 H 1.08997 * 109.60602 * 71.09139 * 4 2 1 33 33 H 1.08990 * 109.61077 * 310.57427 * 4 2 1 34 34 H 1.09003 * 109.47381 * 175.19553 * 9 8 6 35 35 H 1.09000 * 109.47929 * 295.19513 * 9 8 6 36 36 H 1.09002 * 109.47556 * 55.20075 * 9 8 6 37 37 H 1.09008 * 109.47064 * 60.00016 * 12 8 6 38 38 H 1.09000 * 109.47036 * 300.00798 * 12 8 6 39 39 H 0.96701 * 117.00553 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.61234 * 64.26558 * 16 5 4 41 41 H 1.08998 * 109.60988 * 184.77659 * 16 5 4 42 42 H 1.08993 * 109.47218 * 179.15785 * 19 17 16 43 43 H 1.09009 * 109.46600 * 299.15749 * 19 17 16 44 44 H 1.09000 * 109.47247 * 59.14856 * 19 17 16 45 45 H 0.96999 * 120.00370 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7299 -1.2468 5 7 3.4908 -0.9473 -1.1001 6 6 4.3492 -0.5104 -2.0428 7 8 3.9447 0.1659 -2.9648 8 6 5.8118 -0.8619 -1.9513 9 6 5.9693 -2.3833 -1.9166 10 6 6.3800 -0.2817 -0.7236 11 7 6.8185 0.1661 0.2239 12 6 6.5485 -0.3005 -3.1691 13 6 8.0109 -0.6526 -3.0778 14 8 8.4217 -1.2878 -2.1357 15 8 8.8571 -0.2605 -4.0431 16 6 3.9836 -1.6550 0.0898 17 6 3.4693 -0.9203 1.3394 18 1 3.6602 -1.5254 2.2256 19 6 4.1799 0.4278 1.4754 20 7 2.0232 -0.7028 1.1928 21 6 1.1510 -1.1476 2.1501 22 1 0.1427 -1.4215 1.8766 23 6 1.5626 -1.2465 3.4721 24 7 2.7349 -0.7696 3.8337 25 14 0.4530 -2.0565 4.7378 26 1 0.7486 -3.5106 4.7969 27 1 0.6953 -1.4475 6.0705 28 1 -0.9669 -1.8552 4.3524 29 1 -0.3633 -1.0276 0.0061 30 1 -0.3634 0.5192 0.8868 31 1 -0.3633 0.5084 -0.8930 32 1 1.8541 -0.1221 -2.1313 33 1 1.5385 -1.6902 -1.3436 34 1 7.0286 -2.6395 -1.9365 35 1 5.5180 -2.7748 -1.0049 36 1 5.4737 -2.8199 -2.7837 37 1 6.4362 0.7835 -3.1938 38 1 6.1277 -0.7301 -4.0782 39 1 9.7857 -0.5103 -3.9412 40 1 3.6121 -2.6798 0.0860 41 1 5.0735 -1.6584 0.0882 42 1 3.8016 0.9511 2.3535 43 1 5.2522 0.2639 1.5839 44 1 3.9926 1.0287 0.5855 45 1 3.0224 -0.8383 4.7575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589366022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:41 Heat of formation + Delta-G solvation = -45.477548 kcal Electronic energy + Delta-G solvation = -29722.421728 eV Core-core repulsion = 25742.222079 eV Total energy + Delta-G solvation = -3980.199648 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.23361 -40.04240 -37.65839 -37.03530 -36.18461 -34.37356 -34.03298 -32.75333 -31.15140 -29.01455 -27.95289 -26.42250 -26.04629 -24.69603 -23.52794 -21.79640 -21.03778 -20.55110 -19.03178 -18.30280 -18.15673 -16.50298 -16.27923 -16.11316 -15.95106 -15.48539 -15.14291 -14.56449 -14.31663 -14.07252 -13.98126 -13.67181 -13.46315 -13.20872 -13.17754 -12.80851 -12.64987 -12.39859 -12.30798 -12.11824 -11.74648 -11.71145 -11.56642 -11.42395 -11.34511 -11.14583 -10.97233 -10.81074 -10.66622 -10.60954 -10.50390 -10.17155 -10.08882 -9.87056 -9.62024 -9.43184 -8.51652 -8.32503 -6.67779 -5.81211 -3.31997 1.92132 2.43904 2.53486 2.79729 2.97683 3.33168 3.36903 3.41081 3.41816 3.82166 4.21566 4.41447 4.53512 4.61859 5.04968 5.13684 5.15846 5.32619 5.34406 5.49713 5.58334 5.64787 5.67166 5.82823 5.93713 5.99310 6.03042 6.16515 6.16945 6.30234 6.31080 6.44190 6.59575 6.71771 6.84596 6.93133 7.01501 7.06018 7.55926 7.59915 7.61371 7.64948 7.70683 7.81798 8.22346 8.40216 9.15716 9.75889 10.31598 11.23492 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.004117 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.060258 B = 6799.093830 C = 7557.085395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.153 3.847 3 H 0.032 0.968 4 C 0.100 3.900 5 N -0.579 5.579 6 C 0.525 3.475 7 O -0.543 6.543 8 C 0.038 3.962 9 C -0.168 4.168 10 C 0.203 3.797 11 N -0.384 5.384 12 C -0.091 4.091 13 C 0.479 3.521 14 O -0.503 6.503 15 O -0.513 6.513 16 C 0.071 3.929 17 C 0.174 3.826 18 H 0.124 0.876 19 C -0.144 4.144 20 N -0.582 5.582 21 C -0.249 4.249 22 H 0.073 0.927 23 C 0.003 3.997 24 N -0.902 5.902 25 Si 0.905 3.095 26 H -0.288 1.288 27 H -0.292 1.292 28 H -0.280 1.280 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.134 0.866 39 H 0.412 0.588 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.043 0.957 44 H 0.016 0.984 45 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.018 -2.606 -15.276 17.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.046 3.954 3 H 0.050 0.950 4 C -0.024 4.024 5 N -0.309 5.309 6 C 0.310 3.690 7 O -0.421 6.421 8 C 0.031 3.969 9 C -0.226 4.226 10 C -0.116 4.116 11 N -0.060 5.060 12 C -0.129 4.129 13 C 0.321 3.679 14 O -0.390 6.390 15 O -0.325 6.325 16 C -0.053 4.053 17 C 0.067 3.933 18 H 0.141 0.859 19 C -0.203 4.203 20 N -0.304 5.304 21 C -0.378 4.378 22 H 0.091 0.909 23 C -0.195 4.195 24 N -0.547 5.547 25 Si 0.735 3.265 26 H -0.215 1.215 27 H -0.218 1.218 28 H -0.205 1.205 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.061 0.939 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.152 0.848 39 H 0.271 0.729 40 H 0.089 0.911 41 H 0.093 0.907 42 H 0.089 0.911 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 7.182 -1.636 -13.899 15.730 hybrid contribution 0.003 -0.700 0.573 0.905 sum 7.185 -2.336 -13.325 15.318 Atomic orbital electron populations 1.21751 0.95121 1.01701 1.00674 1.20794 0.93371 0.94151 0.87106 0.95046 1.22379 0.78424 1.01120 1.00472 1.47963 1.07473 1.55072 1.20384 1.19590 0.86112 0.80457 0.82873 1.90688 1.78249 1.38609 1.34568 1.18092 0.93004 0.98533 0.87223 1.22471 1.06119 0.89018 1.04957 1.27879 0.94905 0.94536 0.94239 1.81141 1.07810 1.07590 1.09412 1.21157 0.86814 1.05687 0.99266 1.23291 0.89655 0.75761 0.79206 1.90725 1.78582 1.36981 1.32748 1.84516 1.24356 1.74290 1.49370 1.23219 0.98318 0.96823 0.86900 1.21050 0.82895 0.95242 0.94144 0.85925 1.22169 0.98697 0.99091 1.00348 1.44171 1.01916 1.64193 1.20152 1.19237 0.95378 1.36744 0.86487 0.90903 1.25133 0.97390 0.99989 0.97037 1.69873 1.19869 1.48194 1.16802 0.86249 0.80183 0.78910 0.81123 1.21530 1.21783 1.20539 0.92487 0.91665 0.93949 0.89773 0.91395 0.88437 0.89570 0.90278 0.85871 0.84848 0.72917 0.91140 0.90666 0.91110 0.93799 0.96485 0.93522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.37 7.94 37.16 0.30 -2.07 16 2 C 0.15 3.04 3.22 -67.49 -0.22 2.82 16 3 H 0.03 0.69 7.41 -51.93 -0.38 0.31 16 4 C 0.10 1.70 5.91 -3.60 -0.02 1.68 16 5 N -0.58 -9.79 2.57 -172.22 -0.44 -10.24 16 6 C 0.53 8.21 6.45 -10.98 -0.07 8.14 16 7 O -0.54 -9.22 15.40 5.56 0.09 -9.14 16 8 C 0.04 0.50 0.47 -158.45 -0.07 0.43 16 9 C -0.17 -1.86 7.88 37.15 0.29 -1.57 16 10 C 0.20 3.28 8.69 -20.76 -0.18 3.10 16 11 N -0.38 -7.15 15.85 42.15 0.67 -6.49 16 12 C -0.09 -0.92 4.15 -27.89 -0.12 -1.04 16 13 C 0.48 4.82 7.73 36.00 0.28 5.10 16 14 O -0.50 -6.45 13.26 -18.74 -0.25 -6.70 16 15 O -0.51 -3.79 13.42 -39.24 -0.53 -4.31 16 16 C 0.07 1.28 4.04 -3.37 -0.01 1.26 16 17 C 0.17 3.87 2.35 -67.25 -0.16 3.71 16 18 H 0.12 3.13 5.69 -51.93 -0.30 2.84 16 19 C -0.14 -3.29 8.11 37.16 0.30 -2.99 16 20 N -0.58 -13.35 2.70 -156.76 -0.42 -13.77 16 21 C -0.25 -6.23 8.64 -15.06 -0.13 -6.36 16 22 H 0.07 1.78 6.16 -52.48 -0.32 1.45 16 23 C 0.00 0.07 5.14 -17.43 -0.09 -0.02 16 24 N -0.90 -24.53 9.75 55.49 0.54 -23.99 16 25 Si 0.91 20.78 29.56 -169.99 -5.02 15.75 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.06 0.99 7.32 -51.93 -0.38 0.61 16 30 H 0.06 1.25 7.72 -51.93 -0.40 0.85 16 31 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.08 1.38 6.99 -51.93 -0.36 1.02 16 33 H 0.07 1.11 8.11 -51.93 -0.42 0.68 16 34 H 0.10 1.08 5.42 -51.93 -0.28 0.80 16 35 H 0.09 1.03 5.03 -51.93 -0.26 0.77 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.12 1.25 8.07 -51.92 -0.42 0.83 16 38 H 0.13 1.05 8.12 -51.93 -0.42 0.63 16 39 H 0.41 1.35 9.10 45.56 0.41 1.77 16 40 H 0.07 1.21 8.12 -51.93 -0.42 0.79 16 41 H 0.08 1.27 3.20 -51.93 -0.17 1.11 16 42 H 0.07 1.84 7.37 -51.93 -0.38 1.46 16 43 H 0.04 0.97 5.37 -51.92 -0.28 0.69 16 44 H 0.02 0.37 7.02 -51.93 -0.36 0.01 16 45 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 LS Contribution 345.40 15.07 5.21 5.21 Total: -1.00 -31.33 345.40 -5.20 -36.53 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -5.13 Total: 4.94 kcal Atomic # 6 Polarization: 12.10 SS G_CDS: 0.10 Total: 12.19 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 0.34 Total: -54.48 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.69 Total: -20.14 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.33 -5.20 -36.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589366022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.945 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.533 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds