Wall clock time and date at job start Tue Mar 31 2020 14:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09006 * 109.60818 * 2 1 4 4 C 1.53371 * 109.61168 * 239.65464 * 2 1 3 5 5 N 1.46967 * 108.63336 * 190.83226 * 4 2 1 6 6 C 1.34777 * 120.59186 * 235.20260 * 5 4 2 7 7 O 1.21281 * 120.00178 * 6.26476 * 6 5 4 8 8 C 1.50703 * 120.00234 * 186.25868 * 6 5 4 9 9 C 1.52995 * 109.46610 * 57.44856 * 8 6 5 10 10 C 1.47202 * 109.47029 * 297.45253 * 8 6 5 11 11 N 5.00243 * 141.56738 * 355.87085 * 3 1 2 12 12 C 1.52997 * 109.47429 * 177.44989 * 8 6 5 13 13 C 1.50698 * 109.47100 * 180.02562 * 12 8 6 14 14 O 1.20817 * 119.99941 * 0.02562 * 13 12 8 15 15 O 1.34224 * 119.99832 * 180.02562 * 13 12 8 16 16 C 1.46957 * 118.81498 * 55.48031 * 5 4 2 17 17 C 1.53816 * 108.39982 * 304.48370 * 16 5 4 18 18 H 1.08992 * 109.68059 * 169.38533 * 17 16 5 19 19 C 1.53004 * 109.74113 * 289.85078 * 17 16 5 20 20 N 1.46967 * 108.58006 * 49.63201 * 17 16 5 21 21 C 1.36932 * 120.59282 * 124.62642 * 20 17 16 22 22 H 1.08003 * 120.00038 * 209.02448 * 21 20 17 23 23 C 1.38811 * 120.00239 * 29.02296 * 21 20 17 24 24 N 1.31620 * 119.99862 * 7.87309 * 23 21 20 25 25 Si 1.86800 * 120.00385 * 187.87674 * 23 21 20 26 26 H 1.48501 * 109.47277 * 89.99861 * 25 23 21 27 27 H 1.48507 * 109.47022 * 210.00080 * 25 23 21 28 28 H 1.48505 * 109.47012 * 329.99672 * 25 23 21 29 29 H 1.08998 * 109.47167 * 180.34215 * 1 2 3 30 30 H 1.08998 * 109.47535 * 300.34542 * 1 2 3 31 31 H 1.08996 * 109.47283 * 60.34450 * 1 2 3 32 32 H 1.08997 * 109.60602 * 71.09139 * 4 2 1 33 33 H 1.08990 * 109.61077 * 310.57427 * 4 2 1 34 34 H 1.09003 * 109.47381 * 175.19553 * 9 8 6 35 35 H 1.09000 * 109.47929 * 295.19513 * 9 8 6 36 36 H 1.09002 * 109.47556 * 55.20075 * 9 8 6 37 37 H 1.09008 * 109.47064 * 60.00016 * 12 8 6 38 38 H 1.09000 * 109.47036 * 300.00798 * 12 8 6 39 39 H 0.96701 * 117.00553 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.61234 * 64.26558 * 16 5 4 41 41 H 1.08998 * 109.60988 * 184.77659 * 16 5 4 42 42 H 1.08993 * 109.47218 * 179.15785 * 19 17 16 43 43 H 1.09009 * 109.46600 * 299.15749 * 19 17 16 44 44 H 1.09000 * 109.47247 * 59.14856 * 19 17 16 45 45 H 0.96999 * 120.00370 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0447 -0.7299 -1.2468 5 7 3.4908 -0.9473 -1.1001 6 6 4.3492 -0.5104 -2.0428 7 8 3.9447 0.1659 -2.9648 8 6 5.8118 -0.8619 -1.9513 9 6 5.9693 -2.3833 -1.9166 10 6 6.3800 -0.2817 -0.7236 11 7 6.8185 0.1661 0.2239 12 6 6.5485 -0.3005 -3.1691 13 6 8.0109 -0.6526 -3.0778 14 8 8.4217 -1.2878 -2.1357 15 8 8.8571 -0.2605 -4.0431 16 6 3.9836 -1.6550 0.0898 17 6 3.4693 -0.9203 1.3394 18 1 3.6602 -1.5254 2.2256 19 6 4.1799 0.4278 1.4754 20 7 2.0232 -0.7028 1.1928 21 6 1.1510 -1.1476 2.1501 22 1 0.1427 -1.4215 1.8766 23 6 1.5626 -1.2465 3.4721 24 7 2.7349 -0.7696 3.8337 25 14 0.4530 -2.0565 4.7378 26 1 0.7486 -3.5106 4.7969 27 1 0.6953 -1.4475 6.0705 28 1 -0.9669 -1.8552 4.3524 29 1 -0.3633 -1.0276 0.0061 30 1 -0.3634 0.5192 0.8868 31 1 -0.3633 0.5084 -0.8930 32 1 1.8541 -0.1221 -2.1313 33 1 1.5385 -1.6902 -1.3436 34 1 7.0286 -2.6395 -1.9365 35 1 5.5180 -2.7748 -1.0049 36 1 5.4737 -2.8199 -2.7837 37 1 6.4362 0.7835 -3.1938 38 1 6.1277 -0.7301 -4.0782 39 1 9.7857 -0.5103 -3.9412 40 1 3.6121 -2.6798 0.0860 41 1 5.0735 -1.6584 0.0882 42 1 3.8016 0.9511 2.3535 43 1 5.2522 0.2639 1.5839 44 1 3.9926 1.0287 0.5855 45 1 3.0224 -0.8383 4.7575 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589366022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:40 Heat of formation + Delta-G solvation = -66.478864 kcal Electronic energy + Delta-G solvation = -29723.332413 eV Core-core repulsion = 25742.222079 eV Total energy + Delta-G solvation = -3981.110333 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.30531 -41.06338 -39.15169 -38.21300 -37.05450 -35.82173 -35.30221 -34.34935 -32.96899 -30.05052 -29.61030 -27.75130 -27.52939 -26.12270 -25.07034 -22.78671 -22.51298 -21.87770 -20.62826 -19.49028 -19.04948 -17.79999 -17.58755 -17.32051 -16.87951 -16.81223 -16.71791 -15.92188 -15.80516 -15.59022 -15.44439 -15.10780 -14.83186 -14.67374 -14.26056 -14.02516 -13.86857 -13.66226 -13.48651 -13.34704 -13.19117 -13.05002 -12.86020 -12.80683 -12.68218 -12.51055 -12.43360 -12.33067 -12.29313 -12.17773 -11.91796 -11.77744 -11.52286 -11.49418 -11.39376 -10.82645 -10.42426 -9.79483 -8.52819 -7.76445 -5.28873 1.16886 1.17480 1.49888 1.50864 1.52308 1.55360 1.58899 1.87009 2.23926 2.54432 2.67158 3.20417 3.36907 3.38804 3.50293 3.67283 4.11833 4.14745 4.32944 4.37651 4.39506 4.46089 4.54119 4.54691 4.59349 4.71080 4.72626 4.78098 4.80232 4.86557 4.91473 5.07105 5.15211 5.22132 5.30763 5.37337 5.54750 5.67063 5.70437 5.74562 5.82804 6.31676 6.39573 6.47477 6.92416 6.99140 7.21733 7.89730 8.41260 9.25401 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020968 B = 0.004117 C = 0.003704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.060258 B = 6799.093830 C = 7557.085395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.147 3.853 3 H 0.006 0.994 4 C 0.109 3.891 5 N -0.586 5.586 6 C 0.530 3.470 7 O -0.549 6.549 8 C 0.039 3.961 9 C -0.164 4.164 10 C 0.219 3.781 11 N -0.435 5.435 12 C -0.091 4.091 13 C 0.487 3.513 14 O -0.535 6.535 15 O -0.505 6.505 16 C 0.089 3.911 17 C 0.171 3.829 18 H 0.089 0.911 19 C -0.121 4.121 20 N -0.595 5.595 21 C -0.245 4.245 22 H 0.082 0.918 23 C -0.050 4.050 24 N -0.931 5.931 25 Si 0.962 3.038 26 H -0.287 1.287 27 H -0.305 1.305 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.042 0.958 31 H 0.075 0.925 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.100 0.900 35 H 0.075 0.925 36 H 0.109 0.891 37 H 0.125 0.875 38 H 0.165 0.835 39 H 0.431 0.569 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.029 0.971 43 H 0.046 0.954 44 H 0.013 0.987 45 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.643 -3.721 -18.298 19.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.040 3.960 3 H 0.024 0.976 4 C -0.015 4.015 5 N -0.316 5.316 6 C 0.316 3.684 7 O -0.428 6.428 8 C 0.033 3.967 9 C -0.222 4.222 10 C -0.099 4.099 11 N -0.111 5.111 12 C -0.129 4.129 13 C 0.331 3.669 14 O -0.425 6.425 15 O -0.319 6.319 16 C -0.035 4.035 17 C 0.064 3.936 18 H 0.107 0.893 19 C -0.180 4.180 20 N -0.318 5.318 21 C -0.375 4.375 22 H 0.099 0.901 23 C -0.245 4.245 24 N -0.578 5.578 25 Si 0.792 3.208 26 H -0.214 1.214 27 H -0.233 1.233 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.094 0.906 36 H 0.128 0.872 37 H 0.143 0.857 38 H 0.182 0.818 39 H 0.293 0.707 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.049 0.951 43 H 0.065 0.935 44 H 0.033 0.967 45 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 6.814 -2.743 -16.980 18.501 hybrid contribution 0.151 -0.259 1.408 1.440 sum 6.964 -3.002 -15.572 17.321 Atomic orbital electron populations 1.21667 0.93330 1.02120 1.01246 1.20967 0.94963 0.92898 0.87155 0.97628 1.22245 0.78624 1.01647 0.98954 1.47961 1.07732 1.55545 1.20378 1.19861 0.86787 0.79548 0.82238 1.90689 1.78693 1.38575 1.34841 1.18331 0.91352 1.00019 0.87041 1.22499 1.06647 0.87187 1.05822 1.28543 0.93720 0.93337 0.94257 1.81149 1.09550 1.09342 1.11099 1.21227 0.87003 1.05870 0.98798 1.23155 0.89817 0.75001 0.78931 1.90732 1.79120 1.38642 1.34032 1.84466 1.25647 1.73650 1.48090 1.22880 0.98724 0.96651 0.85227 1.20890 0.83032 0.94440 0.95239 0.89303 1.21923 0.98732 0.99265 0.98081 1.44382 1.01948 1.64684 1.20780 1.19555 0.95837 1.35229 0.86840 0.90091 1.25777 0.98539 1.01368 0.98800 1.70081 1.21411 1.50054 1.16215 0.85338 0.79199 0.77820 0.78449 1.21379 1.23271 1.19463 0.91989 0.93896 0.90644 0.88523 0.89839 0.88182 0.90614 0.87238 0.85723 0.81791 0.70683 0.89860 0.89706 0.95142 0.93531 0.96749 0.94628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.21 7.94 71.98 0.57 -3.64 16 2 C 0.15 5.69 3.22 45.02 0.15 5.84 16 3 H 0.01 0.26 7.41 -2.38 -0.02 0.24 16 4 C 0.11 3.45 5.91 86.41 0.51 3.96 16 5 N -0.59 -18.63 2.57 -817.17 -2.10 -20.73 16 6 C 0.53 15.18 6.45 87.66 0.57 15.75 16 7 O -0.55 -16.93 15.40 -3.03 -0.05 -16.98 16 8 C 0.04 0.94 0.47 -54.73 -0.03 0.92 16 9 C -0.16 -3.16 7.88 71.98 0.57 -2.60 16 10 C 0.22 6.92 8.69 89.44 0.78 7.70 16 11 N -0.44 -16.38 15.85 20.01 0.32 -16.06 16 12 C -0.09 -1.57 4.15 29.85 0.12 -1.45 16 13 C 0.49 8.55 7.73 71.24 0.55 9.10 16 14 O -0.53 -12.77 13.26 21.99 0.29 -12.48 16 15 O -0.50 -5.90 13.42 -51.36 -0.69 -6.59 16 16 C 0.09 3.11 4.04 86.57 0.35 3.46 16 17 C 0.17 7.76 2.35 45.18 0.11 7.87 16 18 H 0.09 4.71 5.69 -2.39 -0.01 4.70 16 19 C -0.12 -5.73 8.11 71.98 0.58 -5.15 16 20 N -0.59 -27.42 2.70 -649.86 -1.75 -29.18 16 21 C -0.24 -12.27 8.64 84.03 0.73 -11.55 16 22 H 0.08 3.87 6.16 -2.91 -0.02 3.86 16 23 C -0.05 -2.65 5.14 84.86 0.44 -2.21 16 24 N -0.93 -52.69 9.75 21.65 0.21 -52.48 16 25 Si 0.96 43.41 29.56 68.60 2.03 45.43 16 26 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 27 H -0.31 -14.36 7.11 99.48 0.71 -13.65 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H 0.06 2.01 7.32 -2.39 -0.02 1.99 16 30 H 0.04 1.61 7.72 -2.39 -0.02 1.59 16 31 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.10 2.86 6.99 -2.39 -0.02 2.85 16 33 H 0.08 2.43 8.11 -2.39 -0.02 2.41 16 34 H 0.10 1.97 5.42 -2.39 -0.01 1.96 16 35 H 0.08 1.63 5.03 -2.39 -0.01 1.62 16 36 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 37 H 0.12 2.18 8.07 -2.38 -0.02 2.16 16 38 H 0.16 1.85 8.12 -2.39 -0.02 1.83 16 39 H 0.43 1.59 9.10 -74.06 -0.67 0.91 16 40 H 0.08 2.71 8.12 -2.39 -0.02 2.69 16 41 H 0.09 2.80 3.20 -2.39 -0.01 2.80 16 42 H 0.03 1.64 7.37 -2.39 -0.02 1.63 16 43 H 0.05 2.15 5.37 -2.38 -0.01 2.13 16 44 H 0.01 0.64 7.02 -2.39 -0.02 0.62 16 45 H 0.24 13.78 8.31 -92.71 -0.77 13.01 16 Total: -1.00 -69.82 345.40 4.62 -65.20 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: 0.38 Total: 15.86 kcal Atomic # 6 Polarization: 22.01 SS G_CDS: 5.99 Total: 28.00 kcal Atomic # 7 Polarization: -115.12 SS G_CDS: -3.33 Total: -118.45 kcal Atomic # 8 Polarization: -35.60 SS G_CDS: -0.44 Total: -36.04 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.82 4.62 -65.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589366022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.280 kcal (2) G-P(sol) polarization free energy of solvation -69.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds