Wall clock time and date at job start Tue Mar 31 2020 14:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.74734 * 2 1 4 4 C 1.53369 * 109.60642 * 239.57940 * 2 1 3 5 5 N 1.46972 * 108.63375 * 190.82657 * 4 2 1 6 6 C 1.34770 * 120.59525 * 235.20139 * 5 4 2 7 7 O 1.21282 * 120.00037 * 175.06284 * 6 5 4 8 8 C 1.50700 * 120.00356 * 355.34092 * 6 5 4 9 9 C 1.53000 * 109.47281 * 300.41197 * 8 6 5 10 10 C 1.47207 * 109.46864 * 60.40448 * 8 6 5 11 11 N 3.63073 * 104.27242 * 309.35258 * 2 1 3 12 12 C 1.52991 * 109.47682 * 180.40795 * 8 6 5 13 13 C 1.50698 * 109.47631 * 180.02562 * 12 8 6 14 14 O 1.20834 * 119.99779 * 359.97438 * 13 12 8 15 15 O 1.34228 * 120.00181 * 180.02562 * 13 12 8 16 16 C 1.46966 * 118.81068 * 55.48203 * 5 4 2 17 17 C 1.53817 * 108.39360 * 304.48245 * 16 5 4 18 18 H 1.09007 * 109.67232 * 169.38925 * 17 16 5 19 19 C 1.52998 * 109.74128 * 289.84637 * 17 16 5 20 20 N 1.46957 * 109.61315 * 120.43284 * 2 1 3 21 21 C 1.36936 * 120.59720 * 354.94603 * 20 2 1 22 22 H 1.08002 * 119.99456 * 26.72902 * 21 20 2 23 23 C 1.38809 * 120.00537 * 206.72666 * 21 20 2 24 24 N 1.31617 * 119.99799 * 17.82433 * 23 21 20 25 25 Si 1.86803 * 120.00193 * 197.81947 * 23 21 20 26 26 H 1.48503 * 109.46800 * 90.00189 * 25 23 21 27 27 H 1.48494 * 109.47114 * 209.99851 * 25 23 21 28 28 H 1.48497 * 109.47140 * 330.00245 * 25 23 21 29 29 H 1.09004 * 109.47127 * 180.42395 * 1 2 3 30 30 H 1.09009 * 109.46880 * 300.41743 * 1 2 3 31 31 H 1.08998 * 109.47408 * 60.42303 * 1 2 3 32 32 H 1.08999 * 109.61375 * 71.08355 * 4 2 1 33 33 H 1.09004 * 109.61210 * 310.56948 * 4 2 1 34 34 H 1.09000 * 109.47026 * 59.75879 * 9 8 6 35 35 H 1.08998 * 109.47624 * 179.76134 * 9 8 6 36 36 H 1.09005 * 109.46954 * 299.76156 * 9 8 6 37 37 H 1.09009 * 109.47048 * 300.00260 * 12 8 6 38 38 H 1.09002 * 109.47356 * 59.99811 * 12 8 6 39 39 H 0.96701 * 116.99804 * 179.97438 * 15 13 12 40 40 H 1.08995 * 109.61043 * 64.26118 * 16 5 4 41 41 H 1.08990 * 109.60907 * 184.77812 * 16 5 4 42 42 H 1.09000 * 109.47262 * 173.67855 * 19 17 16 43 43 H 1.09001 * 109.47346 * 293.68576 * 19 17 16 44 44 H 1.08999 * 109.46955 * 53.67901 * 19 17 16 45 45 H 0.97005 * 120.00318 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8983 1.0259 0.0000 4 6 2.0446 -0.7315 -1.2459 5 7 3.4908 -0.9487 -1.0991 6 6 4.3491 -0.5131 -2.0424 7 8 5.5449 -0.6177 -1.8691 8 6 3.8232 0.1097 -3.3099 9 6 2.9360 -0.8981 -4.0435 10 6 3.0340 1.3071 -2.9774 11 7 2.4251 2.2312 -2.7208 12 6 4.9963 0.5055 -4.2087 13 6 4.4704 1.1288 -5.4759 14 8 3.2793 1.2443 -5.6432 15 8 5.3250 1.5549 -6.4192 16 6 3.9837 -1.6549 0.0918 17 6 3.4694 -0.9184 1.3404 18 1 3.6604 -1.5224 2.2275 19 6 4.1801 0.4298 1.4745 20 7 2.0233 -0.7012 1.1936 21 6 1.1513 -1.1439 2.1521 22 1 0.1321 -1.3826 1.8860 23 6 1.5770 -1.2857 3.4656 24 7 2.6747 -0.6827 3.8704 25 14 0.5922 -2.3325 4.6589 26 1 1.0829 -3.7332 4.6101 27 1 0.7539 -1.7990 6.0352 28 1 -0.8432 -2.2974 4.2799 29 1 -0.3633 -1.0277 0.0076 30 1 -0.3633 0.5204 0.8863 31 1 -0.3634 0.5072 -0.8937 32 1 1.8539 -0.1250 -2.1312 33 1 1.5383 -1.6921 -1.3414 34 1 2.1025 -1.1832 -3.4015 35 1 2.5522 -0.4463 -4.9581 36 1 3.5214 -1.7831 -4.2933 37 1 5.6283 1.2236 -3.6861 38 1 5.5806 -0.3811 -4.4549 39 1 4.9406 1.9475 -7.2149 40 1 3.6121 -2.6796 0.0894 41 1 5.0735 -1.6583 0.0902 42 1 3.7349 0.9955 2.2930 43 1 5.2376 0.2642 1.6803 44 1 4.0743 0.9903 0.5457 45 1 2.9725 -0.7821 4.7882 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589366023.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:43 Heat of formation + Delta-G solvation = -71.819902 kcal Electronic energy + Delta-G solvation = -29622.081668 eV Core-core repulsion = 25640.739730 eV Total energy + Delta-G solvation = -3981.341938 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.30403 -41.06661 -39.18108 -38.20860 -37.05400 -35.81939 -35.32163 -34.33131 -33.11117 -29.85513 -29.73155 -27.84965 -27.53650 -26.03454 -25.17800 -22.91473 -22.44168 -21.88657 -20.56761 -19.49203 -19.06783 -17.97674 -17.38771 -17.32374 -17.04372 -16.84534 -16.61318 -16.01171 -15.94935 -15.55130 -15.20439 -15.08729 -14.88595 -14.72450 -14.11732 -14.01645 -13.86661 -13.69166 -13.55245 -13.48283 -13.18684 -13.12322 -12.89340 -12.81624 -12.77367 -12.63782 -12.38138 -12.35126 -12.34075 -12.21008 -11.95296 -11.78082 -11.53918 -11.50612 -11.40972 -10.81007 -10.46747 -9.81185 -8.57379 -7.78865 -5.24021 1.15959 1.16435 1.47461 1.50858 1.51932 1.53778 1.60152 1.83205 2.22262 2.55639 2.62472 3.18506 3.34750 3.37127 3.47457 3.65418 4.03709 4.09539 4.30223 4.36304 4.37224 4.38162 4.55539 4.57029 4.60609 4.66714 4.72172 4.76011 4.78902 4.83814 4.86542 5.04228 5.11209 5.17714 5.26617 5.31154 5.45191 5.66524 5.71205 5.72329 5.82508 6.28974 6.35177 6.44415 6.92424 6.98587 7.20697 7.89070 8.41117 9.25448 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025401 B = 0.003819 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1102.063061 B = 7329.191867 C = 7764.358230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.150 3.850 3 H 0.001 0.999 4 C 0.094 3.906 5 N -0.586 5.586 6 C 0.528 3.472 7 O -0.549 6.549 8 C 0.040 3.960 9 C -0.163 4.163 10 C 0.225 3.775 11 N -0.440 5.440 12 C -0.093 4.093 13 C 0.489 3.511 14 O -0.534 6.534 15 O -0.505 6.505 16 C 0.105 3.895 17 C 0.175 3.825 18 H 0.084 0.916 19 C -0.118 4.118 20 N -0.592 5.592 21 C -0.252 4.252 22 H 0.080 0.920 23 C -0.046 4.046 24 N -0.925 5.925 25 Si 0.959 3.041 26 H -0.286 1.286 27 H -0.305 1.305 28 H -0.272 1.272 29 H 0.067 0.933 30 H 0.042 0.958 31 H 0.065 0.935 32 H 0.091 0.909 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.108 0.892 37 H 0.123 0.877 38 H 0.163 0.837 39 H 0.431 0.569 40 H 0.077 0.923 41 H 0.088 0.912 42 H 0.034 0.966 43 H 0.041 0.959 44 H 0.015 0.985 45 H 0.246 0.754 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.083 -2.425 -20.393 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.043 3.957 3 H 0.018 0.982 4 C -0.030 4.030 5 N -0.316 5.316 6 C 0.313 3.687 7 O -0.427 6.427 8 C 0.033 3.967 9 C -0.221 4.221 10 C -0.093 4.093 11 N -0.116 5.116 12 C -0.131 4.131 13 C 0.332 3.668 14 O -0.424 6.424 15 O -0.319 6.319 16 C -0.019 4.019 17 C 0.067 3.933 18 H 0.102 0.898 19 C -0.177 4.177 20 N -0.315 5.315 21 C -0.381 4.381 22 H 0.097 0.903 23 C -0.242 4.242 24 N -0.571 5.571 25 Si 0.789 3.211 26 H -0.213 1.213 27 H -0.232 1.232 28 H -0.197 1.197 29 H 0.086 0.914 30 H 0.061 0.939 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.112 0.888 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.141 0.859 38 H 0.181 0.819 39 H 0.294 0.706 40 H 0.095 0.905 41 H 0.107 0.893 42 H 0.054 0.946 43 H 0.060 0.940 44 H 0.034 0.966 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 3.669 -1.215 -19.445 19.826 hybrid contribution -0.490 0.033 0.833 0.967 sum 3.179 -1.182 -18.612 18.919 Atomic orbital electron populations 1.21688 0.93770 1.02288 1.00901 1.20860 0.94622 0.92654 0.87536 0.98171 1.22706 0.79726 1.01957 0.98649 1.47956 1.07495 1.55588 1.20605 1.19931 0.86161 0.78697 0.83908 1.90705 1.15244 1.57882 1.78908 1.18338 0.94997 0.88719 0.94667 1.22491 0.99775 0.97652 1.02138 1.28546 0.93868 0.94095 0.92818 1.81234 1.09632 1.11897 1.08817 1.21238 0.96356 1.06118 0.89421 1.23105 0.84171 0.74451 0.85049 1.90721 1.18481 1.53808 1.79400 1.84473 1.43005 1.72767 1.31645 1.22374 0.99801 0.95542 0.84145 1.20803 0.82720 0.94426 0.95302 0.89841 1.21742 0.98476 0.99389 0.98099 1.44406 1.02139 1.64757 1.20223 1.19521 0.95209 1.35970 0.87443 0.90288 1.25648 0.99222 1.01164 0.98159 1.70176 1.26389 1.44400 1.16146 0.85387 0.78868 0.78815 0.78017 1.21299 1.23229 1.19700 0.91402 0.93869 0.91576 0.89108 0.88803 0.90125 0.88061 0.87315 0.85923 0.81918 0.70629 0.90472 0.89350 0.94639 0.94043 0.96571 0.94466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.53 7.92 71.98 0.57 -3.96 16 2 C 0.15 5.91 3.25 45.03 0.15 6.06 16 3 H 0.00 0.03 7.55 -2.39 -0.02 0.01 16 4 C 0.09 2.88 3.85 86.41 0.33 3.21 16 5 N -0.59 -18.55 2.50 -817.15 -2.04 -20.59 16 6 C 0.53 15.03 6.46 87.66 0.57 15.60 16 7 O -0.55 -17.55 15.39 -3.04 -0.05 -17.60 16 8 C 0.04 0.89 0.47 -54.73 -0.03 0.86 16 9 C -0.16 -2.75 7.86 71.98 0.57 -2.18 16 10 C 0.22 6.51 9.25 89.44 0.83 7.34 16 11 N -0.44 -15.11 18.54 20.01 0.37 -14.73 16 12 C -0.09 -1.54 4.15 29.84 0.12 -1.42 16 13 C 0.49 7.96 7.75 71.24 0.55 8.51 16 14 O -0.53 -11.66 13.25 21.94 0.29 -11.37 16 15 O -0.51 -5.47 13.42 -51.40 -0.69 -6.16 16 16 C 0.10 3.75 6.01 86.57 0.52 4.27 16 17 C 0.17 7.81 2.36 45.18 0.11 7.92 16 18 H 0.08 4.28 5.87 -2.38 -0.01 4.26 16 19 C -0.12 -5.43 8.84 71.98 0.64 -4.79 16 20 N -0.59 -27.27 2.69 -649.88 -1.75 -29.02 16 21 C -0.25 -12.65 8.66 84.03 0.73 -11.92 16 22 H 0.08 3.83 6.14 -2.91 -0.02 3.81 16 23 C -0.05 -2.43 4.91 84.86 0.42 -2.01 16 24 N -0.92 -51.65 10.22 21.65 0.22 -51.43 16 25 Si 0.96 43.06 29.59 68.60 2.03 45.09 16 26 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 27 H -0.30 -14.20 7.11 99.48 0.71 -13.50 16 28 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 29 H 0.07 2.25 7.34 -2.38 -0.02 2.24 16 30 H 0.04 1.70 7.70 -2.38 -0.02 1.68 16 31 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.09 2.52 3.27 -2.39 -0.01 2.51 16 33 H 0.09 2.58 8.08 -2.38 -0.02 2.56 16 34 H 0.08 1.42 5.10 -2.39 -0.01 1.41 16 35 H 0.10 1.76 5.52 -2.39 -0.01 1.74 16 36 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.12 2.11 8.09 -2.38 -0.02 2.09 16 38 H 0.16 1.81 8.11 -2.39 -0.02 1.79 16 39 H 0.43 1.14 9.10 -74.06 -0.67 0.47 16 40 H 0.08 2.60 8.14 -2.39 -0.02 2.58 16 41 H 0.09 3.11 6.97 -2.39 -0.02 3.10 16 42 H 0.03 1.86 7.44 -2.39 -0.02 1.84 16 43 H 0.04 1.76 8.14 -2.39 -0.02 1.75 16 44 H 0.02 0.70 7.17 -2.39 -0.02 0.68 16 45 H 0.25 13.59 8.31 -92.70 -0.77 12.82 16 Total: -1.00 -69.07 353.01 4.82 -64.25 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.37 Total: 14.09 kcal Atomic # 6 Polarization: 21.41 SS G_CDS: 6.07 Total: 27.47 kcal Atomic # 7 Polarization: -112.58 SS G_CDS: -3.20 Total: -115.78 kcal Atomic # 8 Polarization: -34.68 SS G_CDS: -0.45 Total: -35.13 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.09 kcal Total: -69.07 4.82 -64.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589366023.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.569 kcal (2) G-P(sol) polarization free energy of solvation -69.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds