Wall clock time and date at job start Tue Mar 31 2020 14:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.61121 * 2 1 4 4 C 1.53379 * 109.75234 * 239.57149 * 2 1 3 5 5 N 1.46959 * 108.63590 * 190.75118 * 4 2 1 6 6 C 1.34784 * 120.59032 * 235.24789 * 5 4 2 7 7 O 1.21277 * 120.00186 * 355.14898 * 6 5 4 8 8 C 1.50698 * 119.99552 * 175.14721 * 6 5 4 9 9 C 1.53005 * 109.46934 * 186.47203 * 8 6 5 10 10 C 1.47200 * 109.47247 * 306.46833 * 8 6 5 11 11 N 4.99386 * 172.56185 * 45.44055 * 2 1 3 12 12 C 1.52999 * 109.47308 * 66.47100 * 8 6 5 13 13 C 1.50702 * 109.47142 * 185.47607 * 12 8 6 14 14 O 1.20821 * 119.99877 * 0.02562 * 13 12 8 15 15 O 1.34223 * 119.99792 * 179.97438 * 13 12 8 16 16 C 1.46961 * 118.81464 * 55.22589 * 5 4 2 17 17 C 1.53812 * 108.58081 * 304.64554 * 16 5 4 18 18 H 1.09000 * 109.76354 * 289.95088 * 17 16 5 19 19 C 1.52998 * 109.69738 * 169.28827 * 17 16 5 20 20 N 1.46965 * 108.39441 * 49.63887 * 17 16 5 21 21 C 1.36935 * 120.59742 * 124.75993 * 20 17 16 22 22 H 1.08002 * 120.00024 * 299.23588 * 21 20 17 23 23 C 1.38816 * 120.00477 * 119.23287 * 21 20 17 24 24 N 1.31618 * 120.00283 * 169.89540 * 23 21 20 25 25 Si 1.86800 * 119.99584 * 349.90201 * 23 21 20 26 26 H 1.48498 * 109.47254 * 274.74047 * 25 23 21 27 27 H 1.48496 * 109.47276 * 34.74534 * 25 23 21 28 28 H 1.48502 * 109.46811 * 154.74428 * 25 23 21 29 29 H 1.09000 * 109.47222 * 299.65944 * 1 2 3 30 30 H 1.09000 * 109.46971 * 59.66094 * 1 2 3 31 31 H 1.09001 * 109.47111 * 179.65895 * 1 2 3 32 32 H 1.09003 * 109.60900 * 310.49615 * 4 2 1 33 33 H 1.08995 * 109.60473 * 71.00230 * 4 2 1 34 34 H 1.08997 * 109.47094 * 64.91010 * 9 8 6 35 35 H 1.08998 * 109.46817 * 184.91142 * 9 8 6 36 36 H 1.08997 * 109.46653 * 304.91253 * 9 8 6 37 37 H 1.09004 * 109.47195 * 305.47574 * 12 8 6 38 38 H 1.08999 * 109.46944 * 65.47621 * 12 8 6 39 39 H 0.96706 * 117.00004 * 179.97438 * 15 13 12 40 40 H 1.08997 * 109.60976 * 64.51651 * 16 5 4 41 41 H 1.08999 * 109.61042 * 184.86143 * 16 5 4 42 42 H 1.09003 * 109.47039 * 306.02022 * 19 17 16 43 43 H 1.08999 * 109.47117 * 66.01912 * 19 17 16 44 44 H 1.09000 * 109.47114 * 186.02213 * 19 17 16 45 45 H 0.97000 * 120.00140 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0267 0.0000 4 6 2.0483 -0.7311 -1.2447 5 7 3.4947 -0.9448 -1.0956 6 6 4.3534 -0.5068 -2.0376 7 8 3.9305 -0.0095 -3.0597 8 6 5.8392 -0.6349 -1.8206 9 6 6.5831 0.0765 -2.9526 10 6 6.2019 -0.0205 -0.5330 11 7 6.4818 0.4536 0.4606 12 6 6.2268 -2.1149 -1.8066 13 6 7.6865 -2.2486 -1.4565 14 8 8.3487 -1.2615 -1.2400 15 8 8.2507 -3.4644 -1.3843 16 6 3.9879 -1.6441 0.0992 17 6 3.4701 -0.9081 1.3466 18 1 3.9708 0.0556 1.4403 19 6 3.7389 -1.7537 2.5930 20 7 2.0233 -0.6994 1.1948 21 6 1.1508 -1.1436 2.1521 22 1 1.0947 -2.1967 2.3849 23 6 0.3384 -0.2403 2.8237 24 7 -0.6345 -0.6772 3.5950 25 14 0.6258 1.5956 2.6325 26 1 1.6637 2.0373 3.5983 27 1 1.0822 1.8837 1.2491 28 1 -0.6401 2.3251 2.8982 29 1 -0.3634 0.5085 0.8930 30 1 -0.3633 0.5191 -0.8869 31 1 -0.3633 -1.0277 -0.0061 32 1 1.5444 -1.6929 -1.3404 33 1 1.8574 -0.1255 -2.1306 34 1 6.3750 1.1455 -2.9086 35 1 7.6548 -0.0898 -2.8439 36 1 6.2494 -0.3195 -3.9117 37 1 5.6257 -2.6410 -1.0650 38 1 6.0484 -2.5465 -2.7915 39 1 9.1899 -3.4997 -1.1567 40 1 3.6220 -2.6708 0.0992 41 1 5.0779 -1.6441 0.0992 42 1 3.3169 -2.7492 2.4546 43 1 4.8141 -1.8339 2.7527 44 1 3.2771 -1.2806 3.4596 45 1 -1.2024 -0.0460 4.0640 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589366024.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:46 Heat of formation + Delta-G solvation = -70.560220 kcal Electronic energy + Delta-G solvation = -29820.084684 eV Core-core repulsion = 25838.797370 eV Total energy + Delta-G solvation = -3981.287314 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.39420 -41.03772 -39.37078 -38.22459 -37.02860 -36.02812 -35.38802 -34.56876 -33.64325 -29.92602 -29.71057 -28.30658 -27.66184 -26.11331 -24.81672 -22.67878 -22.31907 -21.92865 -21.20488 -19.48815 -19.04628 -18.36686 -17.84961 -17.25076 -17.03004 -16.85856 -16.77983 -16.69415 -16.02845 -15.53845 -15.38866 -15.23700 -14.76813 -14.55989 -14.21915 -14.17159 -13.96444 -13.95474 -13.85735 -13.49539 -13.40616 -13.12046 -12.97678 -12.84372 -12.77934 -12.63548 -12.41979 -12.34531 -12.29838 -12.17391 -11.95032 -11.87297 -11.76129 -11.63813 -11.35451 -10.93789 -10.63532 -9.89678 -8.34178 -8.11817 -5.87898 1.05119 1.15436 1.27551 1.37067 1.43702 1.46239 1.57364 1.86527 2.11545 2.38250 2.55765 3.09495 3.16199 3.21896 3.22586 3.62702 3.88709 3.97408 4.18038 4.24517 4.30296 4.32633 4.36023 4.46779 4.48073 4.57859 4.69512 4.72355 4.75110 4.82311 4.83081 4.89846 5.03782 5.16235 5.21770 5.26513 5.32068 5.53342 5.56664 5.63778 5.98900 6.23299 6.33495 6.39479 6.85378 6.97258 7.07480 7.55179 8.15808 8.96914 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018926 B = 0.004581 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1479.064989 B = 6110.121379 C = 6588.409426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.142 3.858 3 H 0.020 0.980 4 C 0.112 3.888 5 N -0.596 5.596 6 C 0.531 3.469 7 O -0.541 6.541 8 C 0.039 3.961 9 C -0.131 4.131 10 C 0.223 3.777 11 N -0.440 5.440 12 C -0.118 4.118 13 C 0.488 3.512 14 O -0.536 6.536 15 O -0.503 6.503 16 C 0.091 3.909 17 C 0.146 3.854 18 H 0.011 0.989 19 C -0.122 4.122 20 N -0.607 5.607 21 C -0.241 4.241 22 H 0.046 0.954 23 C 0.022 3.978 24 N -0.940 5.940 25 Si 0.910 3.090 26 H -0.311 1.311 27 H -0.236 1.236 28 H -0.302 1.302 29 H 0.035 0.965 30 H 0.071 0.929 31 H 0.062 0.938 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.059 0.941 35 H 0.090 0.910 36 H 0.107 0.893 37 H 0.137 0.863 38 H 0.174 0.826 39 H 0.432 0.568 40 H 0.103 0.897 41 H 0.091 0.909 42 H 0.063 0.937 43 H 0.064 0.936 44 H 0.038 0.962 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.277 -7.202 -15.560 22.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.036 3.964 3 H 0.038 0.962 4 C -0.011 4.011 5 N -0.326 5.326 6 C 0.316 3.684 7 O -0.418 6.418 8 C 0.032 3.968 9 C -0.189 4.189 10 C -0.095 4.095 11 N -0.116 5.116 12 C -0.156 4.156 13 C 0.332 3.668 14 O -0.427 6.427 15 O -0.316 6.316 16 C -0.033 4.033 17 C 0.040 3.960 18 H 0.029 0.971 19 C -0.180 4.180 20 N -0.334 5.334 21 C -0.371 4.371 22 H 0.063 0.937 23 C -0.177 4.177 24 N -0.582 5.582 25 Si 0.740 3.260 26 H -0.240 1.240 27 H -0.160 1.160 28 H -0.229 1.229 29 H 0.054 0.946 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.105 0.895 33 H 0.113 0.887 34 H 0.078 0.922 35 H 0.108 0.892 36 H 0.125 0.875 37 H 0.155 0.845 38 H 0.192 0.808 39 H 0.294 0.706 40 H 0.121 0.879 41 H 0.109 0.891 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.057 0.943 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 15.091 -5.915 -14.533 21.770 hybrid contribution 0.193 1.265 0.826 1.523 sum 15.283 -4.650 -13.706 21.049 Atomic orbital electron populations 1.21798 0.94110 1.02387 1.00313 1.21295 0.94556 0.93570 0.86950 0.96232 1.22160 0.78698 1.01935 0.98309 1.48093 1.07645 1.56130 1.20761 1.19907 0.86983 0.78204 0.83276 1.90711 1.78475 1.45016 1.27577 1.18418 0.93278 0.96800 0.88264 1.21908 1.00731 1.00576 0.95690 1.28514 0.92924 0.94077 0.93951 1.81239 1.09317 1.08604 1.12427 1.21822 0.90624 0.92464 1.10653 1.23029 0.90605 0.80835 0.72356 1.90778 1.65048 1.39951 1.46885 1.84462 1.33947 1.31346 1.81880 1.22777 0.98847 0.97507 0.84164 1.21157 0.84950 0.95631 0.94246 0.97080 1.21581 0.99910 0.99928 0.96586 1.44530 1.00956 1.68042 1.19852 1.18130 1.14896 0.91328 1.12751 0.93685 1.26385 0.96531 1.00199 0.94596 1.69874 1.19960 1.35504 1.32896 0.86695 0.75668 0.83934 0.79686 1.23990 1.16019 1.22932 0.94619 0.90989 0.91943 0.89458 0.88725 0.92173 0.89169 0.87469 0.84544 0.80809 0.70586 0.87900 0.89124 0.91750 0.91679 0.94251 0.92914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.01 7.64 71.98 0.55 -4.46 16 2 C 0.14 5.53 2.39 45.03 0.11 5.64 16 3 H 0.02 0.86 6.44 -2.39 -0.02 0.84 16 4 C 0.11 3.45 5.90 86.42 0.51 3.96 16 5 N -0.60 -16.67 2.93 -817.17 -2.40 -19.07 16 6 C 0.53 13.64 6.46 87.66 0.57 14.21 16 7 O -0.54 -16.01 15.30 -3.02 -0.05 -16.05 16 8 C 0.04 0.81 0.47 -54.73 -0.03 0.79 16 9 C -0.13 -2.35 7.66 71.98 0.55 -1.80 16 10 C 0.22 6.26 8.79 89.44 0.79 7.05 16 11 N -0.44 -14.96 18.43 20.01 0.37 -14.59 16 12 C -0.12 -1.50 4.55 29.85 0.14 -1.36 16 13 C 0.49 7.05 7.70 71.24 0.55 7.60 16 14 O -0.54 -11.58 13.40 21.98 0.29 -11.29 16 15 O -0.50 -4.49 13.42 -51.35 -0.69 -5.18 16 16 C 0.09 2.47 3.93 86.57 0.34 2.81 16 17 C 0.15 5.43 3.67 45.18 0.17 5.60 16 18 H 0.01 0.48 8.03 -2.39 -0.02 0.46 16 19 C -0.12 -4.37 8.26 71.98 0.59 -3.77 16 20 N -0.61 -26.06 2.10 -649.86 -1.36 -27.43 16 21 C -0.24 -12.28 6.90 84.03 0.58 -11.70 16 22 H 0.05 2.55 7.77 -2.91 -0.02 2.52 16 23 C 0.02 1.18 4.36 84.86 0.37 1.55 16 24 N -0.94 -55.52 13.97 21.65 0.30 -55.21 16 25 Si 0.91 45.56 25.15 68.60 1.73 47.29 16 26 H -0.31 -16.44 7.11 99.48 0.71 -15.74 16 27 H -0.24 -11.02 4.30 99.48 0.43 -10.59 16 28 H -0.30 -15.21 7.11 99.48 0.71 -14.50 16 29 H 0.04 1.60 3.19 -2.39 -0.01 1.59 16 30 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.06 2.48 7.91 -2.39 -0.02 2.46 16 32 H 0.09 2.50 8.12 -2.39 -0.02 2.48 16 33 H 0.09 2.80 7.02 -2.39 -0.02 2.78 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 1.56 5.93 -2.39 -0.01 1.54 16 36 H 0.11 1.48 7.86 -2.39 -0.02 1.46 16 37 H 0.14 1.57 5.22 -2.38 -0.01 1.56 16 38 H 0.17 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.43 0.70 9.10 -74.05 -0.67 0.03 16 40 H 0.10 2.43 8.10 -2.39 -0.02 2.41 16 41 H 0.09 2.12 3.21 -2.39 -0.01 2.11 16 42 H 0.06 2.19 7.86 -2.39 -0.02 2.17 16 43 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 44 H 0.04 1.67 7.48 -2.39 -0.02 1.65 16 45 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 Total: -1.00 -73.70 346.01 4.06 -69.63 By element: Atomic # 1 Polarization: 5.69 SS G_CDS: 0.09 Total: 5.78 kcal Atomic # 6 Polarization: 20.33 SS G_CDS: 5.78 Total: 26.11 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -3.09 Total: -116.30 kcal Atomic # 8 Polarization: -32.08 SS G_CDS: -0.44 Total: -32.52 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 1.73 Total: 47.29 kcal Total: -73.70 4.06 -69.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589366024.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.927 kcal (2) G-P(sol) polarization free energy of solvation -73.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds