Wall clock time and date at job start Tue Mar 31 2020 14:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.75124 * 2 1 4 4 C 1.53373 * 109.61321 * 239.57445 * 2 1 3 5 5 N 1.46959 * 108.63764 * 190.83371 * 4 2 1 6 6 C 1.34778 * 120.58884 * 235.20254 * 5 4 2 7 7 O 1.21276 * 120.00636 * 4.87813 * 6 5 4 8 8 C 1.50707 * 119.99791 * 184.88137 * 6 5 4 9 9 C 1.53002 * 109.46962 * 59.51375 * 8 6 5 10 10 C 1.47196 * 109.47152 * 299.51508 * 8 6 5 11 11 N 4.95339 * 141.50987 * 354.86946 * 3 1 2 12 12 C 1.53003 * 109.47180 * 179.51193 * 8 6 5 13 13 C 1.50695 * 109.46950 * 179.97438 * 12 8 6 14 14 O 1.20826 * 120.00442 * 0.02562 * 13 12 8 15 15 O 1.34232 * 120.00021 * 180.02562 * 13 12 8 16 16 C 1.46956 * 118.81501 * 55.47578 * 5 4 2 17 17 C 1.53810 * 108.39879 * 304.48386 * 16 5 4 18 18 H 1.08999 * 109.74231 * 289.84601 * 17 16 5 19 19 C 1.52998 * 109.53563 * 169.30061 * 17 16 5 20 20 N 1.46965 * 108.57851 * 49.63736 * 17 16 5 21 21 C 1.36942 * 120.59517 * 124.62924 * 20 17 16 22 22 H 1.08005 * 119.99574 * 234.34108 * 21 20 17 23 23 C 1.38806 * 119.99942 * 54.33283 * 21 20 17 24 24 N 1.31620 * 120.00325 * 17.89446 * 23 21 20 25 25 Si 1.86797 * 119.99818 * 197.88541 * 23 21 20 26 26 H 1.48505 * 109.47171 * 60.00734 * 25 23 21 27 27 H 1.48500 * 109.47106 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47604 * 300.00411 * 25 23 21 29 29 H 1.09000 * 109.47294 * 180.42620 * 1 2 3 30 30 H 1.09001 * 109.47100 * 300.42753 * 1 2 3 31 31 H 1.09003 * 109.47259 * 60.42401 * 1 2 3 32 32 H 1.09004 * 109.60918 * 71.08218 * 4 2 1 33 33 H 1.09007 * 109.74527 * 310.66096 * 4 2 1 34 34 H 1.09000 * 109.47175 * 308.59738 * 9 8 6 35 35 H 1.09003 * 109.47112 * 68.59693 * 9 8 6 36 36 H 1.09000 * 109.46649 * 188.59239 * 9 8 6 37 37 H 1.09000 * 109.46934 * 300.00313 * 12 8 6 38 38 H 1.09000 * 109.46441 * 59.99763 * 12 8 6 39 39 H 0.96694 * 117.00276 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.61068 * 64.26919 * 16 5 4 41 41 H 1.09000 * 109.61143 * 184.77930 * 16 5 4 42 42 H 1.08997 * 109.47277 * 290.85495 * 19 17 16 43 43 H 1.09004 * 109.47013 * 50.85482 * 19 17 16 44 44 H 1.09004 * 109.47244 * 170.84710 * 19 17 16 45 45 H 0.97001 * 120.00368 * 184.91094 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0448 -0.7316 -1.2458 5 7 3.4908 -0.9489 -1.0988 6 6 4.3491 -0.5133 -2.0422 7 8 3.9406 0.1405 -2.9785 8 6 5.8166 -0.8386 -1.9337 9 6 6.0030 -2.3572 -1.9241 10 6 6.3542 -0.2704 -0.6867 11 7 6.7691 0.1681 0.2757 12 6 6.5613 -0.2409 -3.1292 13 6 8.0288 -0.5657 -3.0202 14 8 8.4372 -1.2095 -2.0829 15 8 8.8824 -0.1396 -3.9646 16 6 3.9835 -1.6549 0.0921 17 6 3.4693 -0.9183 1.3406 18 1 3.9757 0.0421 1.4361 19 6 3.7370 -1.7696 2.5834 20 7 2.0232 -0.7011 1.1937 21 6 1.1510 -1.1445 2.1518 22 1 0.3264 -1.7853 1.8763 23 6 1.3268 -0.7704 3.4769 24 7 2.0859 0.2630 3.7739 25 14 0.4856 -1.7334 4.8386 26 1 0.9426 -3.1459 4.8011 27 1 0.8309 -1.1358 6.1535 28 1 -0.9857 -1.6839 4.6440 29 1 -0.3634 -1.0276 0.0076 30 1 -0.3633 0.5205 0.8861 31 1 -0.3634 0.5072 -0.8938 32 1 1.8540 -0.1252 -2.1312 33 1 1.5387 -1.6921 -1.3443 34 1 5.3530 -2.7983 -1.1685 35 1 5.7473 -2.7608 -2.9039 36 1 7.0416 -2.5942 -1.6934 37 1 6.1632 -0.6616 -4.0525 38 1 6.4284 0.8410 -3.1359 39 1 9.8140 -0.3729 -3.8518 40 1 3.6121 -2.6797 0.0897 41 1 5.0735 -1.6583 0.0905 42 1 3.0965 -2.6513 2.5647 43 1 4.7819 -2.0798 2.5931 44 1 3.5235 -1.1842 3.4777 45 1 2.2665 0.4815 4.7016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589366025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:50 Heat of formation + Delta-G solvation = -52.898345 kcal Electronic energy + Delta-G solvation = -29498.337315 eV Core-core repulsion = 25517.815877 eV Total energy + Delta-G solvation = -3980.521438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.23514 -40.03618 -37.65312 -37.04731 -36.19797 -34.42317 -34.19191 -32.94495 -31.27222 -29.01228 -27.85393 -26.37325 -25.91806 -24.96411 -23.55082 -21.81433 -20.61415 -20.42891 -19.43537 -18.34125 -18.15073 -16.51214 -16.34852 -16.13016 -15.95344 -15.59465 -15.02636 -14.72177 -14.39133 -14.19963 -14.04775 -13.73150 -13.60514 -13.18531 -13.04015 -12.65123 -12.61693 -12.55376 -12.30551 -12.13815 -11.77013 -11.67264 -11.61282 -11.58439 -11.41673 -11.32405 -10.92328 -10.80290 -10.69093 -10.58608 -10.50603 -10.39119 -10.11185 -9.96915 -9.81319 -9.50545 -8.50013 -8.08046 -6.45646 -5.79362 -3.65703 1.90564 2.39348 2.50750 2.74039 2.92637 3.29136 3.31601 3.36555 3.38341 3.76092 4.17665 4.37027 4.48561 4.57179 5.02447 5.06874 5.13324 5.23560 5.30779 5.44138 5.54382 5.60247 5.64308 5.84610 5.90282 5.94067 6.05849 6.09128 6.24089 6.28469 6.36717 6.49648 6.53330 6.69432 6.78885 6.84047 7.04476 7.19128 7.35839 7.54968 7.58247 7.59969 7.69152 7.79346 8.17707 8.53365 9.10496 9.62939 10.39944 11.10266 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.004027 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.714627 B = 6950.809841 C = 7733.541402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.155 3.845 3 H 0.030 0.970 4 C 0.099 3.901 5 N -0.583 5.583 6 C 0.525 3.475 7 O -0.539 6.539 8 C 0.037 3.963 9 C -0.166 4.166 10 C 0.206 3.794 11 N -0.389 5.389 12 C -0.091 4.091 13 C 0.479 3.521 14 O -0.504 6.504 15 O -0.513 6.513 16 C 0.073 3.927 17 C 0.186 3.814 18 H 0.033 0.967 19 C -0.145 4.145 20 N -0.575 5.575 21 C -0.267 4.267 22 H 0.055 0.945 23 C 0.038 3.962 24 N -0.872 5.872 25 Si 0.885 3.115 26 H -0.278 1.278 27 H -0.289 1.289 28 H -0.278 1.278 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.098 0.902 37 H 0.135 0.865 38 H 0.123 0.877 39 H 0.412 0.588 40 H 0.074 0.926 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.093 0.907 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.210 -4.613 -14.580 17.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.048 3.952 3 H 0.047 0.953 4 C -0.025 4.025 5 N -0.312 5.312 6 C 0.310 3.690 7 O -0.417 6.417 8 C 0.030 3.970 9 C -0.223 4.223 10 C -0.113 4.113 11 N -0.064 5.064 12 C -0.129 4.129 13 C 0.321 3.679 14 O -0.392 6.392 15 O -0.325 6.325 16 C -0.051 4.051 17 C 0.079 3.921 18 H 0.051 0.949 19 C -0.203 4.203 20 N -0.299 5.299 21 C -0.396 4.396 22 H 0.072 0.928 23 C -0.165 4.165 24 N -0.511 5.511 25 Si 0.713 3.287 26 H -0.204 1.204 27 H -0.215 1.215 28 H -0.204 1.204 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.057 0.943 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.153 0.847 38 H 0.141 0.859 39 H 0.271 0.729 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.040 0.960 44 H 0.111 0.889 45 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 8.279 -3.530 -13.207 15.982 hybrid contribution 0.250 -0.781 0.656 1.050 sum 8.529 -4.311 -12.551 15.775 Atomic orbital electron populations 1.21630 0.94744 1.01531 1.00471 1.20888 0.93740 0.93849 0.86730 0.95257 1.22446 0.78052 1.01201 1.00778 1.47983 1.07727 1.55249 1.20254 1.19590 0.86123 0.80265 0.83062 1.90693 1.78223 1.39389 1.33433 1.18125 0.93246 0.98672 0.86930 1.22424 1.06242 0.88984 1.04691 1.27954 0.94465 0.94664 0.94199 1.81255 1.07958 1.07418 1.09801 1.21179 0.86633 1.05629 0.99491 1.23282 0.89750 0.75726 0.79128 1.90727 1.79080 1.36907 1.32471 1.84516 1.23768 1.73731 1.50481 1.23175 0.98178 0.97048 0.86743 1.20639 0.85846 0.95262 0.90317 0.94923 1.22012 0.96918 1.00715 1.00609 1.43958 1.00830 1.64828 1.20306 1.18636 1.09617 1.24542 0.86833 0.92766 1.25579 0.97365 0.94401 0.99139 1.70134 1.39305 1.23553 1.18074 0.86698 0.80008 0.80361 0.81655 1.20405 1.21524 1.20374 0.92761 0.91423 0.94334 0.89731 0.91405 0.89748 0.90165 0.88356 0.84724 0.85861 0.72899 0.90805 0.90837 0.92599 0.95975 0.88897 0.93367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.34 8.19 37.15 0.30 -2.03 16 2 C 0.15 3.18 3.65 -67.49 -0.25 2.93 16 3 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 4 C 0.10 1.71 5.91 -3.60 -0.02 1.69 16 5 N -0.58 -9.89 2.94 -172.22 -0.51 -10.39 16 6 C 0.53 8.18 6.46 -10.98 -0.07 8.11 16 7 O -0.54 -9.13 15.39 5.56 0.09 -9.04 16 8 C 0.04 0.48 0.47 -158.44 -0.07 0.41 16 9 C -0.17 -1.78 7.69 37.16 0.29 -1.50 16 10 C 0.21 3.33 9.25 -20.76 -0.19 3.14 16 11 N -0.39 -7.32 18.54 42.16 0.78 -6.54 16 12 C -0.09 -0.91 4.14 -27.88 -0.12 -1.03 16 13 C 0.48 4.76 7.77 36.00 0.28 5.04 16 14 O -0.50 -6.38 13.30 -18.75 -0.25 -6.63 16 15 O -0.51 -3.73 13.42 -39.26 -0.53 -4.25 16 16 C 0.07 1.28 3.77 -3.37 -0.01 1.27 16 17 C 0.19 4.11 3.23 -67.26 -0.22 3.89 16 18 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 19 C -0.14 -3.20 7.83 37.16 0.29 -2.91 16 20 N -0.57 -13.33 2.74 -156.76 -0.43 -13.76 16 21 C -0.27 -6.64 6.58 -15.06 -0.10 -6.74 16 22 H 0.05 1.36 7.16 -52.48 -0.38 0.98 16 23 C 0.04 0.98 3.44 -17.43 -0.06 0.92 16 24 N -0.87 -24.01 11.49 55.49 0.64 -23.38 16 25 Si 0.88 20.21 29.59 -169.99 -5.03 15.18 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 29 H 0.05 0.98 7.45 -51.93 -0.39 0.60 16 30 H 0.07 1.41 7.75 -51.93 -0.40 1.01 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.08 1.41 6.99 -51.93 -0.36 1.05 16 33 H 0.07 1.11 8.12 -51.93 -0.42 0.69 16 34 H 0.08 0.96 5.09 -51.93 -0.26 0.70 16 35 H 0.08 0.66 8.13 -51.93 -0.42 0.24 16 36 H 0.10 1.10 5.75 -51.93 -0.30 0.80 16 37 H 0.13 1.04 8.10 -51.93 -0.42 0.62 16 38 H 0.12 1.23 8.09 -51.93 -0.42 0.81 16 39 H 0.41 1.31 9.10 45.56 0.41 1.72 16 40 H 0.07 1.23 8.04 -51.93 -0.42 0.81 16 41 H 0.07 1.22 3.40 -51.93 -0.18 1.04 16 42 H 0.05 1.23 7.44 -51.93 -0.39 0.84 16 43 H 0.02 0.43 8.12 -51.93 -0.42 0.00 16 44 H 0.09 2.33 5.00 -51.93 -0.26 2.07 16 45 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 LS Contribution 353.58 15.07 5.33 5.33 Total: -1.00 -31.77 353.58 -5.28 -37.06 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.43 Total: 3.24 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 0.05 Total: 13.19 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: 0.48 Total: -54.07 kcal Atomic # 8 Polarization: -19.24 SS G_CDS: -0.69 Total: -19.93 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.77 -5.28 -37.06 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589366025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.842 kcal (2) G-P(sol) polarization free energy of solvation -31.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds