Wall clock time and date at job start Tue Mar 31 2020 14:07:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09008 * 109.75124 * 2 1 4 4 C 1.53373 * 109.61321 * 239.57445 * 2 1 3 5 5 N 1.46959 * 108.63764 * 190.83371 * 4 2 1 6 6 C 1.34778 * 120.58884 * 235.20254 * 5 4 2 7 7 O 1.21276 * 120.00636 * 4.87813 * 6 5 4 8 8 C 1.50707 * 119.99791 * 184.88137 * 6 5 4 9 9 C 1.53002 * 109.46962 * 59.51375 * 8 6 5 10 10 C 1.47196 * 109.47152 * 299.51508 * 8 6 5 11 11 N 4.95339 * 141.50987 * 354.86946 * 3 1 2 12 12 C 1.53003 * 109.47180 * 179.51193 * 8 6 5 13 13 C 1.50695 * 109.46950 * 179.97438 * 12 8 6 14 14 O 1.20826 * 120.00442 * 0.02562 * 13 12 8 15 15 O 1.34232 * 120.00021 * 180.02562 * 13 12 8 16 16 C 1.46956 * 118.81501 * 55.47578 * 5 4 2 17 17 C 1.53810 * 108.39879 * 304.48386 * 16 5 4 18 18 H 1.08999 * 109.74231 * 289.84601 * 17 16 5 19 19 C 1.52998 * 109.53563 * 169.30061 * 17 16 5 20 20 N 1.46965 * 108.57851 * 49.63736 * 17 16 5 21 21 C 1.36942 * 120.59517 * 124.62924 * 20 17 16 22 22 H 1.08005 * 119.99574 * 234.34108 * 21 20 17 23 23 C 1.38806 * 119.99942 * 54.33283 * 21 20 17 24 24 N 1.31620 * 120.00325 * 17.89446 * 23 21 20 25 25 Si 1.86797 * 119.99818 * 197.88541 * 23 21 20 26 26 H 1.48505 * 109.47171 * 60.00734 * 25 23 21 27 27 H 1.48500 * 109.47106 * 180.02562 * 25 23 21 28 28 H 1.48495 * 109.47604 * 300.00411 * 25 23 21 29 29 H 1.09000 * 109.47294 * 180.42620 * 1 2 3 30 30 H 1.09001 * 109.47100 * 300.42753 * 1 2 3 31 31 H 1.09003 * 109.47259 * 60.42401 * 1 2 3 32 32 H 1.09004 * 109.60918 * 71.08218 * 4 2 1 33 33 H 1.09007 * 109.74527 * 310.66096 * 4 2 1 34 34 H 1.09000 * 109.47175 * 308.59738 * 9 8 6 35 35 H 1.09003 * 109.47112 * 68.59693 * 9 8 6 36 36 H 1.09000 * 109.46649 * 188.59239 * 9 8 6 37 37 H 1.09000 * 109.46934 * 300.00313 * 12 8 6 38 38 H 1.09000 * 109.46441 * 59.99763 * 12 8 6 39 39 H 0.96694 * 117.00276 * 180.02562 * 15 13 12 40 40 H 1.09000 * 109.61068 * 64.26919 * 16 5 4 41 41 H 1.09000 * 109.61143 * 184.77930 * 16 5 4 42 42 H 1.08997 * 109.47277 * 290.85495 * 19 17 16 43 43 H 1.09004 * 109.47013 * 50.85482 * 19 17 16 44 44 H 1.09004 * 109.47244 * 170.84710 * 19 17 16 45 45 H 0.97001 * 120.00368 * 184.91094 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8983 1.0260 0.0000 4 6 2.0448 -0.7316 -1.2458 5 7 3.4908 -0.9489 -1.0988 6 6 4.3491 -0.5133 -2.0422 7 8 3.9406 0.1405 -2.9785 8 6 5.8166 -0.8386 -1.9337 9 6 6.0030 -2.3572 -1.9241 10 6 6.3542 -0.2704 -0.6867 11 7 6.7691 0.1681 0.2757 12 6 6.5613 -0.2409 -3.1292 13 6 8.0288 -0.5657 -3.0202 14 8 8.4372 -1.2095 -2.0829 15 8 8.8824 -0.1396 -3.9646 16 6 3.9835 -1.6549 0.0921 17 6 3.4693 -0.9183 1.3406 18 1 3.9757 0.0421 1.4361 19 6 3.7370 -1.7696 2.5834 20 7 2.0232 -0.7011 1.1937 21 6 1.1510 -1.1445 2.1518 22 1 0.3264 -1.7853 1.8763 23 6 1.3268 -0.7704 3.4769 24 7 2.0859 0.2630 3.7739 25 14 0.4856 -1.7334 4.8386 26 1 0.9426 -3.1459 4.8011 27 1 0.8309 -1.1358 6.1535 28 1 -0.9857 -1.6839 4.6440 29 1 -0.3634 -1.0276 0.0076 30 1 -0.3633 0.5205 0.8861 31 1 -0.3634 0.5072 -0.8938 32 1 1.8540 -0.1252 -2.1312 33 1 1.5387 -1.6921 -1.3443 34 1 5.3530 -2.7983 -1.1685 35 1 5.7473 -2.7608 -2.9039 36 1 7.0416 -2.5942 -1.6934 37 1 6.1632 -0.6616 -4.0525 38 1 6.4284 0.8410 -3.1359 39 1 9.8140 -0.3729 -3.8518 40 1 3.6121 -2.6797 0.0897 41 1 5.0735 -1.6583 0.0905 42 1 3.0965 -2.6513 2.5647 43 1 4.7819 -2.0798 2.5931 44 1 3.5235 -1.1842 3.4777 45 1 2.2665 0.4815 4.7016 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589366025.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:07:49 Heat of formation + Delta-G solvation = -74.901725 kcal Electronic energy + Delta-G solvation = -29499.291453 eV Core-core repulsion = 25517.815877 eV Total energy + Delta-G solvation = -3981.475576 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29180 -41.04531 -39.16800 -38.22699 -37.05526 -35.94760 -35.43027 -34.49870 -33.11165 -29.96257 -29.53664 -27.70267 -27.48630 -26.37431 -25.01697 -22.65944 -22.11980 -21.96698 -21.00363 -19.43708 -19.07010 -17.95429 -17.58127 -17.33678 -16.86578 -16.79764 -16.70965 -16.35500 -15.88020 -15.59945 -15.33026 -15.21914 -14.85876 -14.64076 -14.07459 -14.01251 -13.88712 -13.75601 -13.43200 -13.33347 -13.25790 -13.17640 -12.95196 -12.84882 -12.72801 -12.48887 -12.38974 -12.37516 -12.32514 -12.24333 -12.12512 -11.76684 -11.66016 -11.53808 -11.49165 -10.84619 -10.22975 -9.74549 -8.39473 -7.70547 -5.64600 1.13358 1.16544 1.46064 1.47448 1.49508 1.51151 1.54516 1.82020 2.20767 2.49684 2.61943 3.17444 3.23912 3.34559 3.46889 3.64278 4.04850 4.12174 4.32697 4.36544 4.37528 4.41986 4.45235 4.56202 4.58598 4.71098 4.74769 4.78093 4.79899 4.84862 4.92032 4.97375 5.14763 5.17963 5.32362 5.40540 5.56494 5.62534 5.66393 5.73156 5.83736 6.27242 6.32695 6.56126 6.88184 6.98440 7.21256 7.75003 8.48793 9.12938 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021005 B = 0.004027 C = 0.003620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.714627 B = 6950.809841 C = 7733.541402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.147 3.853 3 H -0.006 1.006 4 C 0.110 3.890 5 N -0.592 5.592 6 C 0.530 3.470 7 O -0.547 6.547 8 C 0.039 3.961 9 C -0.162 4.162 10 C 0.223 3.777 11 N -0.445 5.445 12 C -0.091 4.091 13 C 0.488 3.512 14 O -0.536 6.536 15 O -0.505 6.505 16 C 0.092 3.908 17 C 0.186 3.814 18 H -0.014 1.014 19 C -0.137 4.137 20 N -0.589 5.589 21 C -0.260 4.260 22 H 0.059 0.941 23 C -0.004 4.004 24 N -0.911 5.911 25 Si 0.939 3.061 26 H -0.269 1.269 27 H -0.301 1.301 28 H -0.273 1.273 29 H 0.061 0.939 30 H 0.036 0.964 31 H 0.070 0.930 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.078 0.922 35 H 0.113 0.887 36 H 0.096 0.904 37 H 0.166 0.834 38 H 0.123 0.877 39 H 0.431 0.569 40 H 0.093 0.907 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.040 0.960 44 H 0.061 0.939 45 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.208 -6.561 -17.353 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.041 3.959 3 H 0.011 0.989 4 C -0.013 4.013 5 N -0.321 5.321 6 C 0.315 3.685 7 O -0.425 6.425 8 C 0.032 3.968 9 C -0.219 4.219 10 C -0.095 4.095 11 N -0.120 5.120 12 C -0.129 4.129 13 C 0.331 3.669 14 O -0.426 6.426 15 O -0.318 6.318 16 C -0.033 4.033 17 C 0.079 3.921 18 H 0.003 0.997 19 C -0.195 4.195 20 N -0.314 5.314 21 C -0.390 4.390 22 H 0.076 0.924 23 C -0.203 4.203 24 N -0.552 5.552 25 Si 0.766 3.234 26 H -0.194 1.194 27 H -0.227 1.227 28 H -0.198 1.198 29 H 0.080 0.920 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.113 0.887 33 H 0.105 0.895 34 H 0.097 0.903 35 H 0.132 0.868 36 H 0.115 0.885 37 H 0.184 0.816 38 H 0.142 0.858 39 H 0.293 0.707 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.080 0.920 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 8.292 -5.485 -16.029 18.861 hybrid contribution 0.281 -0.073 1.423 1.453 sum 8.573 -5.558 -14.605 17.824 Atomic orbital electron populations 1.21521 0.93216 1.01967 1.00587 1.21031 0.95116 0.92319 0.87477 0.98871 1.22247 0.78454 1.01741 0.98854 1.48013 1.07900 1.55802 1.20425 1.19894 0.86877 0.79305 0.82430 1.90692 1.78701 1.39366 1.33790 1.18371 0.91462 1.00426 0.86514 1.22466 1.06077 0.86860 1.06528 1.28637 0.93229 0.93335 0.94251 1.81269 1.09850 1.09289 1.11626 1.21255 0.86814 1.05694 0.99171 1.23137 0.89908 0.75007 0.78835 1.90734 1.79593 1.38533 1.33724 1.84466 1.25067 1.73063 1.49254 1.22860 0.98624 0.97040 0.84749 1.20508 0.85198 0.93691 0.92684 0.99661 1.21866 0.98114 1.00051 0.99444 1.44215 1.01102 1.65201 1.20847 1.18861 1.09482 1.23508 0.87165 0.92373 1.26152 0.98075 0.95011 1.01039 1.70272 1.41657 1.25593 1.17712 0.85830 0.79272 0.79454 0.78841 1.19408 1.22742 1.19795 0.91954 0.94523 0.91069 0.88671 0.89508 0.90343 0.86797 0.88500 0.81604 0.85847 0.70668 0.88888 0.89796 0.92407 0.94074 0.92000 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.17 8.19 71.98 0.59 -3.58 16 2 C 0.15 6.02 3.65 45.03 0.16 6.19 16 3 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 4 C 0.11 3.59 5.91 86.42 0.51 4.10 16 5 N -0.59 -19.00 2.94 -817.17 -2.40 -21.40 16 6 C 0.53 15.26 6.46 87.66 0.57 15.83 16 7 O -0.55 -17.02 15.39 -3.02 -0.05 -17.07 16 8 C 0.04 0.93 0.47 -54.73 -0.03 0.90 16 9 C -0.16 -2.97 7.69 71.98 0.55 -2.41 16 10 C 0.22 7.11 9.25 89.44 0.83 7.94 16 11 N -0.44 -17.05 18.54 20.01 0.37 -16.68 16 12 C -0.09 -1.56 4.14 29.85 0.12 -1.44 16 13 C 0.49 8.44 7.77 71.23 0.55 9.00 16 14 O -0.54 -12.59 13.30 21.96 0.29 -12.30 16 15 O -0.50 -5.82 13.42 -51.44 -0.69 -6.52 16 16 C 0.09 3.11 3.77 86.57 0.33 3.43 16 17 C 0.19 8.34 3.23 45.18 0.15 8.48 16 18 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 19 C -0.14 -6.12 7.83 71.98 0.56 -5.55 16 20 N -0.59 -27.56 2.74 -649.88 -1.78 -29.34 16 21 C -0.26 -13.01 6.58 84.03 0.55 -12.45 16 22 H 0.06 2.86 7.16 -2.91 -0.02 2.83 16 23 C 0.00 -0.19 3.44 84.86 0.29 0.10 16 24 N -0.91 -52.32 11.49 21.65 0.25 -52.07 16 25 Si 0.94 42.02 29.59 68.60 2.03 44.05 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 28 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 29 H 0.06 2.14 7.45 -2.39 -0.02 2.12 16 30 H 0.04 1.53 7.75 -2.39 -0.02 1.51 16 31 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 32 H 0.10 2.92 6.99 -2.38 -0.02 2.91 16 33 H 0.09 2.54 8.12 -2.38 -0.02 2.52 16 34 H 0.08 1.54 5.09 -2.39 -0.01 1.53 16 35 H 0.11 1.35 8.13 -2.39 -0.02 1.33 16 36 H 0.10 1.91 5.75 -2.39 -0.01 1.89 16 37 H 0.17 1.82 8.10 -2.39 -0.02 1.80 16 38 H 0.12 2.17 8.09 -2.39 -0.02 2.15 16 39 H 0.43 1.51 9.10 -74.06 -0.67 0.84 16 40 H 0.09 2.84 8.04 -2.39 -0.02 2.82 16 41 H 0.08 2.68 3.40 -2.39 -0.01 2.67 16 42 H 0.06 2.51 7.44 -2.39 -0.02 2.49 16 43 H 0.04 1.62 8.12 -2.38 -0.02 1.60 16 44 H 0.06 3.20 5.00 -2.38 -0.01 3.19 16 45 H 0.25 14.07 8.32 -92.71 -0.77 13.30 16 Total: -1.00 -71.65 353.58 4.13 -67.52 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 0.36 Total: 13.27 kcal Atomic # 6 Polarization: 24.79 SS G_CDS: 5.74 Total: 30.53 kcal Atomic # 7 Polarization: -115.93 SS G_CDS: -3.56 Total: -119.49 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -0.44 Total: -35.88 kcal Atomic # 14 Polarization: 42.02 SS G_CDS: 2.03 Total: 44.05 kcal Total: -71.65 4.13 -67.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589366025.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.381 kcal (2) G-P(sol) polarization free energy of solvation -71.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds