Wall clock time and date at job start Tue Mar 31 2020 13:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53001 * 109.47478 * 2 1 4 4 N 1.46511 * 109.46962 * 119.99778 * 2 1 3 5 5 C 1.46496 * 119.99709 * 299.99851 * 4 2 1 6 6 C 1.50700 * 109.47437 * 269.99847 * 5 4 2 7 7 H 1.08001 * 119.99540 * 0.02562 * 6 5 4 8 8 C 1.37874 * 119.99886 * 180.02562 * 6 5 4 9 9 N 1.31507 * 120.00320 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99870 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47120 * 0.02562 * 10 8 6 12 12 H 1.48495 * 109.47103 * 119.99770 * 10 8 6 13 13 H 1.48493 * 109.47426 * 240.00128 * 10 8 6 14 14 C 1.34773 * 119.99864 * 119.99741 * 4 2 1 15 15 O 1.21280 * 119.99975 * 179.97438 * 14 4 2 16 16 C 1.50698 * 120.00228 * 0.02562 * 14 4 2 17 17 C 1.53003 * 109.47315 * 179.97438 * 16 14 4 18 18 C 1.53002 * 109.47158 * 179.97438 * 17 16 14 19 19 N 1.46500 * 109.46822 * 180.02562 * 18 17 16 20 20 C 1.35048 * 124.87645 * 124.99948 * 19 18 17 21 21 C 1.35349 * 107.24050 * 179.70887 * 20 19 18 22 22 C 1.41554 * 105.50059 * 0.26661 * 21 20 19 23 23 C 1.47579 * 126.52545 * 179.97438 * 22 21 20 24 24 O 1.21497 * 119.99741 * 359.97438 * 23 22 21 25 25 O 1.34728 * 120.00460 * 179.97438 * 23 22 21 26 26 N 1.28463 * 124.87921 * 305.18632 * 19 18 17 27 27 H 1.08998 * 109.47548 * 300.00559 * 1 2 3 28 28 H 1.09005 * 109.47054 * 60.00248 * 1 2 3 29 29 H 1.08999 * 109.47062 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47548 * 239.99441 * 2 1 3 31 31 H 1.08998 * 109.47049 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46775 * 299.99922 * 3 2 1 33 33 H 1.09008 * 109.47027 * 59.99745 * 3 2 1 34 34 H 1.09000 * 109.47178 * 30.00776 * 5 4 2 35 35 H 1.09004 * 109.46450 * 149.99853 * 5 4 2 36 36 H 0.97003 * 120.00475 * 180.02562 * 9 8 6 37 37 H 1.09001 * 109.47200 * 59.99577 * 16 14 4 38 38 H 1.08999 * 109.47153 * 299.99430 * 16 14 4 39 39 H 1.09001 * 109.47143 * 59.99773 * 17 16 14 40 40 H 1.08999 * 109.46733 * 299.99918 * 17 16 14 41 41 H 1.09001 * 109.47258 * 59.99868 * 18 17 16 42 42 H 1.08999 * 109.46977 * 300.00101 * 18 17 16 43 43 H 1.08002 * 126.38468 * 359.97438 * 20 19 18 44 44 H 1.07999 * 127.25525 * 180.28125 * 21 20 19 45 45 H 0.96692 * 117.00460 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6643 -0.1900 2.5268 6 6 2.7030 0.8019 2.9831 7 1 3.5427 1.0363 2.3455 8 6 2.5814 1.4101 4.2144 9 7 1.5593 1.1244 4.9909 10 14 3.8686 2.6402 4.7797 11 1 4.9089 2.7857 3.7300 12 1 3.2235 3.9556 5.0221 13 1 4.4964 2.1577 6.0359 14 6 2.7930 -1.7864 1.0727 15 8 3.1977 -2.3579 2.0629 16 6 3.1576 -2.3011 -0.2960 17 6 4.0376 -3.5448 -0.1556 18 6 4.4071 -4.0676 -1.5452 19 7 5.2492 -5.2589 -1.4106 20 6 4.9857 -6.4583 -1.9725 21 6 5.9923 -7.2938 -1.6252 22 6 6.8639 -6.5219 -0.8201 23 6 8.1173 -6.9821 -0.1914 24 8 8.4885 -8.1287 -0.3450 25 8 8.8498 -6.1308 0.5527 26 7 6.3426 -5.3135 -0.7385 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8899 31 1 3.1300 1.4424 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 0.6903 0.2974 2.4843 35 1 1.6236 -1.0226 3.2292 36 1 1.4736 1.5526 5.8571 37 1 3.7028 -1.5302 -0.8407 38 1 2.2494 -2.5579 -0.8414 39 1 3.4927 -4.3158 0.3893 40 1 4.9457 -3.2876 0.3896 41 1 4.9518 -3.2968 -2.0904 42 1 3.4988 -4.3249 -2.0900 43 1 4.1330 -6.7039 -2.5882 44 1 6.1066 -8.3310 -1.9038 45 1 9.6627 -6.4781 0.9446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591575075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:00 Heat of formation + Delta-G solvation = -82.377625 kcal Electronic energy + Delta-G solvation = -26947.580003 eV Core-core repulsion = 22965.780247 eV Total energy + Delta-G solvation = -3981.799755 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.69811 -40.95067 -40.82072 -37.63436 -37.16312 -36.21914 -34.92927 -32.95617 -32.37690 -31.78982 -29.90267 -28.24493 -27.87944 -25.91129 -24.65537 -23.10585 -22.45986 -22.39059 -21.36864 -19.52092 -18.98093 -18.70759 -18.60680 -18.08399 -17.47289 -17.01548 -16.83127 -16.73944 -16.19064 -16.04943 -15.31163 -14.80781 -14.77661 -14.70757 -14.47659 -14.29537 -14.09490 -13.85320 -13.45641 -13.28743 -13.13111 -12.96135 -12.87411 -12.70770 -12.69302 -12.64458 -12.44483 -12.18422 -12.07281 -12.03226 -12.00355 -11.69556 -11.59114 -11.47788 -10.62610 -10.54404 -10.34405 -10.10292 -9.38380 -8.20390 -6.32017 0.24151 1.15168 1.33539 1.36582 1.42027 1.47308 1.90516 2.08612 2.16513 2.33740 2.48933 3.09447 3.36355 3.64339 3.88114 3.95962 4.00568 4.05311 4.26741 4.33493 4.36100 4.47089 4.49780 4.53812 4.64771 4.70211 4.75136 4.89697 4.92631 5.03272 5.06491 5.10488 5.16004 5.26130 5.27944 5.31759 5.43912 5.48151 5.62176 5.66495 5.87657 5.92366 6.11797 6.74946 6.75487 6.89927 7.02490 7.32548 7.56852 8.86938 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.002705 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.197224 B =10347.092929 C =11787.426124 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.125 3.875 3 C -0.155 4.155 4 N -0.599 5.599 5 C 0.263 3.737 6 C -0.523 4.523 7 H 0.054 0.946 8 C 0.004 3.996 9 N -0.931 5.931 10 Si 0.960 3.040 11 H -0.266 1.266 12 H -0.270 1.270 13 H -0.286 1.286 14 C 0.487 3.513 15 O -0.607 6.607 16 C -0.120 4.120 17 C -0.111 4.111 18 C 0.119 3.881 19 N -0.272 5.272 20 C 0.006 3.994 21 C -0.193 4.193 22 C -0.048 4.048 23 C 0.577 3.423 24 O -0.537 6.537 25 O -0.505 6.505 26 N -0.265 5.265 27 H 0.031 0.969 28 H 0.098 0.902 29 H 0.060 0.940 30 H 0.128 0.872 31 H 0.043 0.957 32 H 0.091 0.909 33 H 0.037 0.963 34 H 0.025 0.975 35 H -0.013 1.013 36 H 0.264 0.736 37 H 0.123 0.877 38 H 0.139 0.861 39 H 0.055 0.945 40 H 0.046 0.954 41 H 0.118 0.882 42 H 0.161 0.839 43 H 0.238 0.762 44 H 0.177 0.823 45 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.398 -10.062 -23.044 25.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.023 3.977 3 C -0.213 4.213 4 N -0.330 5.330 5 C 0.141 3.859 6 C -0.561 4.561 7 H 0.072 0.928 8 C -0.194 4.194 9 N -0.572 5.572 10 Si 0.785 3.215 11 H -0.191 1.191 12 H -0.195 1.195 13 H -0.212 1.212 14 C 0.277 3.723 15 O -0.489 6.489 16 C -0.160 4.160 17 C -0.150 4.150 18 C 0.001 3.999 19 N -0.062 5.062 20 C -0.135 4.135 21 C -0.221 4.221 22 C -0.204 4.204 23 C 0.420 3.580 24 O -0.426 6.426 25 O -0.318 6.318 26 N -0.104 5.104 27 H 0.050 0.950 28 H 0.116 0.884 29 H 0.079 0.921 30 H 0.146 0.854 31 H 0.062 0.938 32 H 0.110 0.890 33 H 0.057 0.943 34 H 0.043 0.957 35 H 0.005 0.995 36 H 0.073 0.927 37 H 0.141 0.859 38 H 0.157 0.843 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.136 0.864 42 H 0.179 0.821 43 H 0.254 0.746 44 H 0.195 0.805 45 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges 2.381 -9.288 -22.130 24.118 hybrid contribution 1.115 -0.294 1.611 1.981 sum 3.497 -9.582 -20.520 22.915 Atomic orbital electron populations 1.22135 0.94498 1.02343 1.02585 1.21473 0.95046 0.93848 0.87322 1.22105 1.00632 0.96238 1.02280 1.48413 1.49370 1.27056 1.08184 1.18600 0.95134 0.92411 0.79715 1.21706 1.08918 1.23359 1.02154 0.92822 1.25806 0.97791 0.99201 0.96634 1.70055 1.31381 1.44675 1.11107 0.85482 0.79163 0.78823 0.78065 1.19065 1.19535 1.21229 1.21597 0.77801 0.80095 0.92798 1.90668 1.55430 1.60016 1.42808 1.21616 1.03136 0.98454 0.92827 1.21444 0.99809 0.97249 0.96485 1.22513 0.95373 0.84145 0.97829 1.46096 1.15271 1.12052 1.32799 1.23711 1.03061 0.83884 1.02890 1.22062 0.94861 1.02382 1.02764 1.20998 0.98067 0.93138 1.08202 1.19456 0.81909 0.82002 0.74614 1.90875 1.70901 1.20103 1.60684 1.84654 1.39846 1.45415 1.61854 1.73687 0.99874 1.22037 1.14779 0.94965 0.88359 0.92134 0.85404 0.93811 0.89043 0.94334 0.95740 0.99491 0.92687 0.85921 0.84350 0.92664 0.93542 0.86400 0.82149 0.74613 0.80544 0.70471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.81 9.17 71.98 0.66 -3.15 16 2 C 0.13 3.35 3.17 44.99 0.14 3.49 16 3 C -0.15 -4.44 8.47 71.98 0.61 -3.83 16 4 N -0.60 -23.73 2.39 -802.14 -1.91 -25.64 16 5 C 0.26 13.96 4.59 85.63 0.39 14.35 16 6 C -0.52 -29.74 7.83 25.60 0.20 -29.54 16 7 H 0.05 3.03 7.63 -2.91 -0.02 3.01 16 8 C 0.00 0.22 5.46 84.65 0.46 0.68 16 9 N -0.93 -56.98 13.29 21.44 0.28 -56.70 16 10 Si 0.96 45.56 29.54 68.60 2.03 47.58 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.51 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 13 H -0.29 -13.65 7.11 99.48 0.71 -12.94 16 14 C 0.49 18.81 7.67 87.66 0.67 19.48 16 15 O -0.61 -31.35 15.56 -3.03 -0.05 -31.39 16 16 C -0.12 -2.48 4.01 29.85 0.12 -2.36 16 17 C -0.11 -2.48 4.60 30.60 0.14 -2.33 16 18 C 0.12 1.35 6.40 86.38 0.55 1.90 16 19 N -0.27 -4.95 3.41 -347.95 -1.19 -6.13 16 20 C 0.01 0.08 11.40 83.53 0.95 1.03 16 21 C -0.19 -3.64 10.81 22.42 0.24 -3.40 16 22 C -0.05 -1.25 7.17 42.42 0.30 -0.95 16 23 C 0.58 15.26 8.34 70.29 0.59 15.85 16 24 O -0.54 -15.68 17.71 19.85 0.35 -15.33 16 25 O -0.50 -11.41 13.44 -56.39 -0.76 -12.17 16 26 N -0.26 -7.10 11.67 -48.21 -0.56 -7.66 16 27 H 0.03 1.01 6.66 -2.39 -0.02 0.99 16 28 H 0.10 1.62 8.14 -2.38 -0.02 1.60 16 29 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.13 2.10 5.77 -2.39 -0.01 2.08 16 31 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.09 1.83 8.14 -2.38 -0.02 1.81 16 33 H 0.04 1.43 6.92 -2.38 -0.02 1.41 16 34 H 0.02 1.33 6.43 -2.39 -0.02 1.32 16 35 H -0.01 -0.82 7.42 -2.38 -0.02 -0.84 16 36 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 37 H 0.12 1.86 7.79 -2.39 -0.02 1.84 16 38 H 0.14 1.55 7.79 -2.39 -0.02 1.54 16 39 H 0.05 1.47 8.10 -2.39 -0.02 1.45 16 40 H 0.05 1.45 8.04 -2.39 -0.02 1.43 16 41 H 0.12 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.16 0.16 8.04 -2.39 -0.02 0.14 16 43 H 0.24 0.39 8.06 -2.91 -0.02 0.37 16 44 H 0.18 2.69 8.06 -2.91 -0.02 2.67 16 45 H 0.43 4.98 9.11 -74.06 -0.67 4.31 16 Total: -1.00 -93.53 382.24 4.57 -88.96 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: 0.34 Total: 7.25 kcal Atomic # 6 Polarization: 5.19 SS G_CDS: 6.04 Total: 11.23 kcal Atomic # 7 Polarization: -92.75 SS G_CDS: -3.38 Total: -96.13 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -0.45 Total: -58.89 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -93.53 4.57 -88.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591575075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.582 kcal (2) G-P(sol) polarization free energy of solvation -93.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds