Wall clock time and date at job start Tue Mar 31 2020 13:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46983 * 2 1 4 4 N 1.46501 * 109.47120 * 300.00339 * 3 2 1 5 5 C 1.34950 * 126.03800 * 124.71335 * 4 3 2 6 6 C 1.35316 * 107.74281 * 179.83859 * 5 4 3 7 7 C 1.39869 * 107.92248 * 0.42131 * 6 5 4 8 8 N 1.30838 * 108.20275 * 359.73962 * 7 6 5 9 9 N 1.46501 * 109.47469 * 120.00126 * 2 1 3 10 10 C 1.34774 * 120.00001 * 59.99931 * 9 2 1 11 11 O 1.21280 * 120.00134 * 0.02562 * 10 9 2 12 12 C 1.50700 * 119.99586 * 180.02562 * 10 9 2 13 13 C 1.53008 * 109.46717 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47080 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46992 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46935 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99858 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00229 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47165 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47168 * 119.99970 * 20 18 16 23 23 H 1.48509 * 109.46926 * 239.99617 * 20 18 16 24 24 C 1.50696 * 109.47666 * 240.00376 * 2 1 3 25 25 O 1.20833 * 119.99655 * 24.99146 * 24 2 1 26 26 O 1.34231 * 120.00640 * 205.27417 * 24 2 1 27 27 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47263 * 299.99440 * 1 2 3 29 29 H 1.08993 * 109.47528 * 60.00299 * 1 2 3 30 30 H 1.09005 * 109.46645 * 59.99908 * 3 2 1 31 31 H 1.08994 * 109.47455 * 179.97438 * 3 2 1 32 32 H 1.08000 * 126.12701 * 359.97438 * 5 4 3 33 33 H 1.08001 * 126.04162 * 180.16302 * 6 5 4 34 34 H 1.08000 * 125.89939 * 179.75751 * 7 6 5 35 35 H 0.97011 * 119.99800 * 240.00420 * 9 2 1 36 36 H 1.09001 * 109.47277 * 299.99885 * 12 10 9 37 37 H 1.08996 * 109.47648 * 60.00468 * 12 10 9 38 38 H 1.09001 * 109.46861 * 299.99782 * 13 12 10 39 39 H 1.08996 * 109.46971 * 59.99696 * 13 12 10 40 40 H 1.09001 * 109.46951 * 299.99550 * 14 13 12 41 41 H 1.08996 * 109.47314 * 59.99451 * 14 13 12 42 42 H 1.09001 * 109.46823 * 299.99528 * 15 14 13 43 43 H 1.08996 * 109.47622 * 59.99539 * 15 14 13 44 44 H 0.97000 * 119.99941 * 180.02562 * 19 18 16 45 45 H 0.96693 * 117.00337 * 179.72181 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5515 2.1332 -1.1961 5 6 0.8474 3.2842 -1.2164 6 6 0.5932 3.5894 -2.5100 7 6 1.1531 2.5856 -3.3071 8 7 1.7278 1.7122 -2.5206 9 7 2.0184 -0.6906 1.1961 10 6 1.6928 -1.9810 1.4094 11 8 0.9959 -2.5705 0.6109 12 6 2.1948 -2.6911 2.6402 13 6 1.6855 -4.1339 2.6398 14 6 2.1946 -4.8548 3.8896 15 6 1.6857 -6.2977 3.8889 16 6 2.1877 -7.0080 5.1196 17 1 2.8080 -6.4828 5.8309 18 6 1.8560 -8.3284 5.3370 19 7 1.1011 -8.9681 4.4706 20 14 2.4776 -9.2086 6.8629 21 1 3.3007 -8.2746 7.6723 22 1 1.3220 -9.6769 7.6695 23 1 3.3046 -10.3743 6.4596 24 6 2.0324 -0.7103 -1.2304 25 8 1.3396 -0.7702 -2.2186 26 8 3.2472 -1.2813 -1.2269 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.6765 1.9563 0.8900 31 1 3.1299 1.4427 0.0005 32 1 0.5433 3.8599 -0.3547 33 1 0.0501 4.4531 -2.8642 34 1 1.1175 2.5397 -4.3855 35 1 2.5761 -0.2191 1.8347 36 1 3.2849 -2.6910 2.6406 37 1 1.8311 -2.1773 3.5300 38 1 0.5955 -4.1344 2.6392 39 1 2.0495 -4.6475 1.7500 40 1 3.2846 -4.8544 3.8906 41 1 1.8302 -4.3410 4.7792 42 1 0.5957 -6.2985 3.8876 43 1 2.0504 -6.8112 2.9993 44 1 0.8674 -9.8970 4.6237 45 1 3.5243 -1.7289 -2.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592917785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:55 Heat of formation + Delta-G solvation = -54.912776 kcal Electronic energy + Delta-G solvation = -27304.987464 eV Core-core repulsion = 23324.378673 eV Total energy + Delta-G solvation = -3980.608790 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.78369 -40.74939 -39.34831 -36.72714 -36.00037 -34.90287 -33.43637 -32.64415 -31.04862 -30.28450 -29.34999 -27.33655 -25.75309 -24.85180 -22.80572 -21.66565 -21.42510 -20.43060 -20.12281 -19.98367 -18.36273 -17.64882 -17.36108 -16.88136 -16.26342 -16.06669 -15.70235 -15.44474 -14.69489 -14.60806 -14.42729 -14.32308 -14.04053 -13.87763 -13.53482 -13.18354 -12.95484 -12.70721 -12.60224 -12.40433 -12.19909 -12.09063 -11.72049 -11.61046 -11.50338 -11.00928 -10.86326 -10.71652 -10.56815 -10.49361 -10.43745 -9.93927 -9.75493 -9.64017 -9.49997 -9.24601 -8.99403 -8.96015 -8.31384 -5.95824 -3.98431 1.51840 1.84128 2.21078 2.47958 2.57073 2.82111 2.93049 3.32590 3.39821 3.43548 3.71686 4.08287 4.34387 4.43121 4.48221 4.63811 4.71081 4.82736 5.10271 5.19655 5.23634 5.31385 5.37433 5.39599 5.41345 5.41569 5.67208 5.78837 5.90508 5.98903 6.10476 6.26407 6.30291 6.51285 6.52448 6.56337 6.81299 6.98902 7.13745 7.20550 7.36190 7.73640 7.89042 7.89227 8.04931 8.06429 8.47031 9.09546 9.65321 11.15481 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038783 B = 0.002008 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.784560 B =13941.330858 C =14139.808025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.182 3.818 3 C 0.136 3.864 4 N -0.379 5.379 5 C 0.054 3.946 6 C -0.269 4.269 7 C 0.047 3.953 8 N -0.273 5.273 9 N -0.726 5.726 10 C 0.520 3.480 11 O -0.522 6.522 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.488 3.512 25 O -0.479 6.479 26 O -0.515 6.515 27 H 0.091 0.909 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.119 0.881 31 H 0.101 0.899 32 H 0.174 0.826 33 H 0.148 0.852 34 H 0.182 0.818 35 H 0.406 0.594 36 H 0.094 0.906 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.524 30.170 -10.452 32.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.093 3.907 3 C 0.013 3.987 4 N -0.162 5.162 5 C -0.091 4.091 6 C -0.299 4.299 7 C -0.140 4.140 8 N -0.093 5.093 9 N -0.383 5.383 10 C 0.308 3.692 11 O -0.396 6.396 12 C -0.175 4.175 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.147 4.147 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.326 3.674 25 O -0.363 6.363 26 O -0.327 6.327 27 H 0.110 0.890 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.137 0.863 31 H 0.119 0.881 32 H 0.192 0.808 33 H 0.166 0.834 34 H 0.199 0.801 35 H 0.242 0.758 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 2.313 28.574 -10.810 30.638 hybrid contribution 0.275 0.195 0.537 0.634 sum 2.588 28.769 -10.273 30.658 Atomic orbital electron populations 1.22140 0.90246 1.05993 1.02949 1.20276 0.96702 0.90703 0.83008 1.21792 1.01123 0.90106 0.85695 1.48447 1.43606 1.18767 1.05425 1.22557 0.97109 0.89567 0.99882 1.21530 1.12027 1.04370 0.91934 1.23926 0.97411 0.92376 1.00291 1.77591 1.23745 1.21810 0.86130 1.46033 1.55412 1.13087 1.23806 1.21222 0.79268 0.80351 0.88314 1.90731 1.36731 1.65347 1.46766 1.21798 1.02677 0.98460 0.94520 1.21471 1.01244 0.91203 1.00274 1.21645 0.99533 0.98886 0.94678 1.19103 0.96472 0.89261 0.96967 1.21315 1.31276 0.96177 1.07029 0.92686 1.25054 0.95306 0.97711 0.96587 1.69987 1.37088 1.10733 1.35612 0.86552 0.78600 0.79672 0.83254 1.19783 1.21061 1.21061 1.22867 0.79159 0.76371 0.89020 1.90703 1.56539 1.54609 1.34409 1.84449 1.35170 1.67221 1.45847 0.89016 0.91017 0.90546 0.86266 0.88099 0.80847 0.83417 0.80096 0.75828 0.88726 0.88835 0.91764 0.91753 0.93419 0.93433 0.96594 0.96588 0.93091 0.73265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.70 7.77 37.16 0.29 -1.41 16 2 C 0.18 1.78 0.85 -132.97 -0.11 1.66 16 3 C 0.14 0.84 5.57 -4.04 -0.02 0.82 16 4 N -0.38 -3.23 2.91 -61.36 -0.18 -3.40 16 5 C 0.05 0.35 11.45 -17.22 -0.20 0.15 16 6 C -0.27 -1.95 10.80 -40.01 -0.43 -2.38 16 7 C 0.05 0.44 12.03 -17.37 -0.21 0.23 16 8 N -0.27 -3.14 9.36 30.62 0.29 -2.85 16 9 N -0.73 -6.27 4.87 -48.68 -0.24 -6.51 16 10 C 0.52 6.65 7.15 -10.99 -0.08 6.57 16 11 O -0.52 -9.07 13.19 5.56 0.07 -8.99 16 12 C -0.13 -1.63 5.70 -27.88 -0.16 -1.79 16 13 C -0.10 -1.80 4.50 -26.73 -0.12 -1.92 16 14 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.36 16 16 C -0.52 -14.91 9.11 -34.44 -0.31 -15.22 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -27.52 13.29 55.43 0.74 -26.79 16 20 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.49 6.43 4.63 36.00 0.17 6.60 16 25 O -0.48 -7.82 14.99 -18.76 -0.28 -8.10 16 26 O -0.51 -5.96 13.01 -39.26 -0.51 -6.47 16 27 H 0.09 1.32 6.17 -51.93 -0.32 1.00 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 0.92 7.33 -51.93 -0.38 0.54 16 30 H 0.12 0.27 8.07 -51.93 -0.42 -0.15 16 31 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.17 0.46 8.06 -52.49 -0.42 0.04 16 33 H 0.15 0.73 8.06 -52.49 -0.42 0.31 16 34 H 0.18 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.41 1.89 8.47 -40.82 -0.35 1.54 16 36 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 45 H 0.41 3.50 9.10 45.56 0.41 3.92 16 LS Contribution 378.33 15.07 5.70 5.70 Total: -1.00 -39.57 378.33 -7.08 -46.65 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -6.08 Total: 1.11 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -1.56 Total: -7.18 kcal Atomic # 7 Polarization: -40.16 SS G_CDS: 0.61 Total: -39.55 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.72 Total: -23.56 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -39.57 -7.08 -46.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592917785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.262 kcal (2) G-P(sol) polarization free energy of solvation -39.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds