Wall clock time and date at job start Tue Mar 31 2020 13:36:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46983 * 2 1 4 4 N 1.46501 * 109.47120 * 300.00339 * 3 2 1 5 5 C 1.34950 * 126.03800 * 124.71335 * 4 3 2 6 6 C 1.35316 * 107.74281 * 179.83859 * 5 4 3 7 7 C 1.39869 * 107.92248 * 0.42131 * 6 5 4 8 8 N 1.30838 * 108.20275 * 359.73962 * 7 6 5 9 9 N 1.46501 * 109.47469 * 120.00126 * 2 1 3 10 10 C 1.34774 * 120.00001 * 59.99931 * 9 2 1 11 11 O 1.21280 * 120.00134 * 0.02562 * 10 9 2 12 12 C 1.50700 * 119.99586 * 180.02562 * 10 9 2 13 13 C 1.53008 * 109.46717 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47080 * 180.02562 * 13 12 10 15 15 C 1.52999 * 109.46992 * 180.02562 * 14 13 12 16 16 C 1.50706 * 109.46935 * 179.97438 * 15 14 13 17 17 H 1.08002 * 119.99832 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99858 * 180.02562 * 16 15 14 19 19 N 1.31519 * 120.00229 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99899 * 180.02562 * 18 16 15 21 21 H 1.48491 * 109.47165 * 359.97438 * 20 18 16 22 22 H 1.48497 * 109.47168 * 119.99970 * 20 18 16 23 23 H 1.48509 * 109.46926 * 239.99617 * 20 18 16 24 24 C 1.50696 * 109.47666 * 240.00376 * 2 1 3 25 25 O 1.20833 * 119.99655 * 24.99146 * 24 2 1 26 26 O 1.34231 * 120.00640 * 205.27417 * 24 2 1 27 27 H 1.09004 * 109.46819 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47263 * 299.99440 * 1 2 3 29 29 H 1.08993 * 109.47528 * 60.00299 * 1 2 3 30 30 H 1.09005 * 109.46645 * 59.99908 * 3 2 1 31 31 H 1.08994 * 109.47455 * 179.97438 * 3 2 1 32 32 H 1.08000 * 126.12701 * 359.97438 * 5 4 3 33 33 H 1.08001 * 126.04162 * 180.16302 * 6 5 4 34 34 H 1.08000 * 125.89939 * 179.75751 * 7 6 5 35 35 H 0.97011 * 119.99800 * 240.00420 * 9 2 1 36 36 H 1.09001 * 109.47277 * 299.99885 * 12 10 9 37 37 H 1.08996 * 109.47648 * 60.00468 * 12 10 9 38 38 H 1.09001 * 109.46861 * 299.99782 * 13 12 10 39 39 H 1.08996 * 109.46971 * 59.99696 * 13 12 10 40 40 H 1.09001 * 109.46951 * 299.99550 * 14 13 12 41 41 H 1.08996 * 109.47314 * 59.99451 * 14 13 12 42 42 H 1.09001 * 109.46823 * 299.99528 * 15 14 13 43 43 H 1.08996 * 109.47622 * 59.99539 * 15 14 13 44 44 H 0.97000 * 119.99941 * 180.02562 * 19 18 16 45 45 H 0.96693 * 117.00337 * 179.72181 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 1.5515 2.1332 -1.1961 5 6 0.8474 3.2842 -1.2164 6 6 0.5932 3.5894 -2.5100 7 6 1.1531 2.5856 -3.3071 8 7 1.7278 1.7122 -2.5206 9 7 2.0184 -0.6906 1.1961 10 6 1.6928 -1.9810 1.4094 11 8 0.9959 -2.5705 0.6109 12 6 2.1948 -2.6911 2.6402 13 6 1.6855 -4.1339 2.6398 14 6 2.1946 -4.8548 3.8896 15 6 1.6857 -6.2977 3.8889 16 6 2.1877 -7.0080 5.1196 17 1 2.8080 -6.4828 5.8309 18 6 1.8560 -8.3284 5.3370 19 7 1.1011 -8.9681 4.4706 20 14 2.4776 -9.2086 6.8629 21 1 3.3007 -8.2746 7.6723 22 1 1.3220 -9.6769 7.6695 23 1 3.3046 -10.3743 6.4596 24 6 2.0324 -0.7103 -1.2304 25 8 1.3396 -0.7702 -2.2186 26 8 3.2472 -1.2813 -1.2269 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5137 -0.8899 30 1 1.6765 1.9563 0.8900 31 1 3.1299 1.4427 0.0005 32 1 0.5433 3.8599 -0.3547 33 1 0.0501 4.4531 -2.8642 34 1 1.1175 2.5397 -4.3855 35 1 2.5761 -0.2191 1.8347 36 1 3.2849 -2.6910 2.6406 37 1 1.8311 -2.1773 3.5300 38 1 0.5955 -4.1344 2.6392 39 1 2.0495 -4.6475 1.7500 40 1 3.2846 -4.8544 3.8906 41 1 1.8302 -4.3410 4.7792 42 1 0.5957 -6.2985 3.8876 43 1 2.0504 -6.8112 2.9993 44 1 0.8674 -9.8970 4.6237 45 1 3.5243 -1.7289 -2.0380 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592917785.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:54 Heat of formation + Delta-G solvation = -84.468418 kcal Electronic energy + Delta-G solvation = -27306.269092 eV Core-core repulsion = 23324.378673 eV Total energy + Delta-G solvation = -3981.890419 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.46143 -41.54870 -40.38565 -37.59965 -37.02781 -36.53846 -34.63222 -34.11828 -32.09234 -31.06175 -30.61519 -28.03868 -27.39035 -25.78191 -24.37447 -22.63835 -21.96766 -21.71757 -21.16948 -20.98583 -19.26042 -18.45140 -18.42682 -18.24801 -17.57082 -16.98197 -16.80250 -16.51468 -16.31270 -15.63784 -15.48118 -15.17481 -14.87661 -14.81587 -14.54080 -14.29020 -13.93895 -13.72432 -13.59205 -13.49413 -13.38790 -13.18070 -13.14391 -12.90146 -12.83792 -12.49716 -12.30494 -12.14070 -12.11537 -11.73154 -11.45658 -11.36135 -11.34327 -11.14181 -10.81039 -10.55692 -10.43044 -10.34333 -9.50244 -8.18585 -6.30730 0.98367 1.14534 1.40686 1.41635 1.41840 1.54735 1.55142 2.00446 2.04280 2.13434 2.42107 3.13119 3.14295 3.45785 3.74445 3.84459 4.05343 4.11035 4.11981 4.17836 4.28081 4.34584 4.48215 4.58389 4.69604 4.72141 4.74759 4.87435 4.89257 4.94006 5.05250 5.13118 5.18556 5.20869 5.34902 5.40824 5.58618 5.62452 5.73704 5.79348 5.89118 6.14246 6.25515 6.43339 6.78414 6.88576 6.96613 7.17761 7.39102 8.93826 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038783 B = 0.002008 C = 0.001980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 721.784560 B =13941.330858 C =14139.808025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.184 3.816 3 C 0.135 3.865 4 N -0.385 5.385 5 C 0.064 3.936 6 C -0.284 4.284 7 C 0.028 3.972 8 N -0.327 5.327 9 N -0.699 5.699 10 C 0.519 3.481 11 O -0.577 6.577 12 C -0.123 4.123 13 C -0.097 4.097 14 C -0.095 4.095 15 C 0.017 3.983 16 C -0.539 4.539 17 H 0.068 0.932 18 C -0.010 4.010 19 N -0.939 5.939 20 Si 0.970 3.030 21 H -0.255 1.255 22 H -0.280 1.280 23 H -0.281 1.281 24 C 0.479 3.521 25 O -0.522 6.522 26 O -0.516 6.516 27 H 0.049 0.951 28 H 0.106 0.894 29 H 0.059 0.941 30 H 0.172 0.828 31 H 0.114 0.886 32 H 0.219 0.781 33 H 0.167 0.833 34 H 0.188 0.812 35 H 0.431 0.569 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.042 0.958 39 H 0.037 0.963 40 H 0.061 0.939 41 H 0.065 0.935 42 H -0.016 1.016 43 H -0.019 1.019 44 H 0.262 0.738 45 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.057 33.204 -7.233 34.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.095 3.905 3 C 0.013 3.987 4 N -0.169 5.169 5 C -0.081 4.081 6 C -0.313 4.313 7 C -0.158 4.158 8 N -0.148 5.148 9 N -0.357 5.357 10 C 0.308 3.692 11 O -0.455 6.455 12 C -0.162 4.162 13 C -0.136 4.136 14 C -0.132 4.132 15 C -0.020 4.020 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.794 3.206 21 H -0.179 1.179 22 H -0.205 1.205 23 H -0.207 1.207 24 C 0.319 3.681 25 O -0.408 6.408 26 O -0.328 6.328 27 H 0.069 0.931 28 H 0.124 0.876 29 H 0.078 0.922 30 H 0.189 0.811 31 H 0.132 0.868 32 H 0.236 0.764 33 H 0.185 0.815 34 H 0.205 0.795 35 H 0.272 0.728 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.061 0.939 39 H 0.056 0.944 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.002 0.998 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges 3.902 31.666 -7.564 32.790 hybrid contribution -0.229 -0.768 -0.534 0.963 sum 3.674 30.898 -8.099 32.152 Atomic orbital electron populations 1.22034 0.91237 1.03499 1.03770 1.20329 0.95934 0.92677 0.81581 1.22123 1.02096 0.87663 0.86775 1.48615 1.43880 1.19417 1.04951 1.23275 0.95139 0.88658 1.00979 1.21865 1.12425 1.04648 0.92322 1.24278 0.97600 0.92924 1.01034 1.77519 1.25764 1.23467 0.88010 1.45658 1.54613 1.11756 1.23654 1.21345 0.78546 0.81398 0.87890 1.90743 1.39302 1.66894 1.48563 1.21674 1.04180 0.94733 0.95631 1.21255 0.99901 0.94682 0.97713 1.21439 1.00159 0.94931 0.96691 1.19079 0.94481 0.93381 0.95106 1.21800 1.31286 0.96821 1.07746 0.91344 1.26125 0.95400 0.98859 1.00281 1.70148 1.38579 1.11222 1.38035 0.85321 0.78165 0.78335 0.78736 1.17864 1.20548 1.20654 1.23718 0.78866 0.75698 0.89775 1.90680 1.57591 1.56237 1.36321 1.84425 1.34789 1.67076 1.46547 0.93142 0.87554 0.92189 0.81055 0.86767 0.76450 0.81532 0.79538 0.72838 0.85918 0.85199 0.93895 0.94411 0.91981 0.91639 0.99799 1.00013 0.92930 0.72276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 7.77 71.98 0.56 -2.54 16 2 C 0.18 3.25 0.85 2.86 0.00 3.25 16 3 C 0.14 1.18 5.57 86.38 0.48 1.66 16 4 N -0.39 -5.71 2.91 -348.05 -1.01 -6.72 16 5 C 0.06 0.63 11.45 83.54 0.96 1.59 16 6 C -0.28 -3.70 10.80 21.99 0.24 -3.46 16 7 C 0.03 0.53 12.03 85.24 1.02 1.56 16 8 N -0.33 -7.58 9.36 -57.02 -0.53 -8.11 16 9 N -0.70 -9.87 4.87 -426.33 -2.08 -11.95 16 10 C 0.52 12.46 7.15 87.66 0.63 13.08 16 11 O -0.58 -20.62 13.19 -3.03 -0.04 -20.66 16 12 C -0.12 -2.61 5.70 29.85 0.17 -2.44 16 13 C -0.10 -3.36 4.50 30.60 0.14 -3.23 16 14 C -0.09 -3.73 5.15 30.59 0.16 -3.57 16 15 C 0.02 0.91 4.97 29.85 0.15 1.06 16 16 C -0.54 -30.99 9.11 25.60 0.23 -30.76 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 18 C -0.01 -0.57 5.46 84.65 0.46 -0.11 16 19 N -0.94 -59.34 13.29 21.45 0.28 -59.05 16 20 Si 0.97 44.66 29.54 68.60 2.03 46.69 16 21 H -0.26 -10.90 7.11 99.48 0.71 -10.20 16 22 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 23 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 24 C 0.48 12.79 4.63 71.23 0.33 13.12 16 25 O -0.52 -18.07 14.99 21.94 0.33 -17.74 16 26 O -0.52 -11.96 13.01 -51.42 -0.67 -12.63 16 27 H 0.05 1.51 6.17 -2.38 -0.01 1.49 16 28 H 0.11 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.06 1.46 7.33 -2.39 -0.02 1.44 16 30 H 0.17 -0.33 8.07 -2.38 -0.02 -0.35 16 31 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.22 -0.03 8.06 -2.91 -0.02 -0.05 16 33 H 0.17 1.35 8.06 -2.91 -0.02 1.32 16 34 H 0.19 2.85 8.06 -2.91 -0.02 2.82 16 35 H 0.43 1.78 8.47 -92.70 -0.79 0.99 16 36 H 0.12 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.04 1.64 8.10 -2.39 -0.02 1.62 16 39 H 0.04 1.48 8.10 -2.39 -0.02 1.46 16 40 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 41 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 42 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 43 H -0.02 -1.12 8.14 -2.39 -0.02 -1.14 16 44 H 0.26 15.49 8.31 -92.71 -0.77 14.72 16 45 H 0.42 7.59 9.10 -74.06 -0.67 6.91 16 Total: -1.00 -93.98 378.33 3.39 -90.59 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: -0.45 Total: 10.38 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 5.53 Total: -10.79 kcal Atomic # 7 Polarization: -82.50 SS G_CDS: -3.34 Total: -85.84 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: -0.38 Total: -51.03 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Total: -93.98 3.39 -90.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592917785.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.126 kcal (2) G-P(sol) polarization free energy of solvation -93.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds