Wall clock time and date at job start Tue Mar 31 2020 13:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 N 1.46500 * 109.47210 * 60.00399 * 3 2 1 5 5 C 1.34945 * 126.04023 * 124.71128 * 4 3 2 6 6 C 1.35313 * 107.74522 * 179.83760 * 5 4 3 7 7 C 1.39872 * 107.92153 * 0.42886 * 6 5 4 8 8 N 1.30832 * 108.20032 * 359.73239 * 7 6 5 9 9 N 1.46504 * 109.47128 * 240.00549 * 2 1 3 10 10 C 1.34782 * 119.99589 * 299.99788 * 9 2 1 11 11 O 1.21284 * 120.00163 * 0.02562 * 10 9 2 12 12 C 1.50702 * 120.00005 * 180.02562 * 10 9 2 13 13 C 1.52997 * 109.47098 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47191 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47191 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47010 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99763 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00248 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99468 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46937 * 120.00391 * 20 18 16 23 23 H 1.48500 * 109.46865 * 240.00636 * 20 18 16 24 24 C 1.50697 * 109.47599 * 120.00204 * 2 1 3 25 25 O 1.20833 * 119.99747 * 335.00322 * 24 2 1 26 26 O 1.34230 * 120.00262 * 154.71944 * 24 2 1 27 27 H 1.09004 * 109.47177 * 299.99641 * 1 2 3 28 28 H 1.09003 * 109.47418 * 59.99750 * 1 2 3 29 29 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47023 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47189 * 300.00390 * 3 2 1 32 32 H 1.08004 * 126.12541 * 0.02562 * 5 4 3 33 33 H 1.08007 * 126.03887 * 180.15797 * 6 5 4 34 34 H 1.07997 * 125.89872 * 179.71198 * 7 6 5 35 35 H 0.96990 * 120.00634 * 119.99875 * 9 2 1 36 36 H 1.09003 * 109.46780 * 299.99718 * 12 10 9 37 37 H 1.08997 * 109.47246 * 59.99590 * 12 10 9 38 38 H 1.08994 * 109.47214 * 299.99878 * 13 12 10 39 39 H 1.09004 * 109.47023 * 60.00027 * 13 12 10 40 40 H 1.09003 * 109.46867 * 300.00610 * 14 13 12 41 41 H 1.09004 * 109.46681 * 60.00349 * 14 13 12 42 42 H 1.09003 * 109.47189 * 300.00139 * 15 14 13 43 43 H 1.08997 * 109.47293 * 60.00289 * 15 14 13 44 44 H 0.96999 * 119.99264 * 179.97438 * 19 18 16 45 45 H 0.96699 * 116.99771 * 180.27188 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5517 2.1331 1.1962 5 6 2.3124 2.7662 2.1135 6 6 1.4848 3.2741 3.0559 7 6 0.1742 2.9316 2.7076 8 7 0.2131 2.2476 1.5930 9 7 2.0183 -0.6905 -1.1963 10 6 1.6927 -1.9809 -1.4096 11 8 0.9950 -2.5702 -0.6115 12 6 2.1954 -2.6914 -2.6398 13 6 1.6858 -4.1341 -2.6395 14 6 2.1957 -4.8553 -3.8889 15 6 1.6867 -6.2981 -3.8883 16 6 2.1895 -7.0086 -5.1185 17 1 2.8104 -6.4837 -5.8294 18 6 1.8577 -8.3291 -5.3360 19 7 1.1020 -8.9684 -4.4700 20 14 2.4815 -9.2101 -6.8605 21 1 3.3063 -8.2766 -7.6689 22 1 3.3074 -10.3758 -6.4554 23 1 1.3271 -9.6782 -7.6688 24 6 2.0324 -0.7104 1.2304 25 8 1.3396 -0.7704 2.2186 26 8 3.2471 -1.2815 1.2267 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 3.3887 2.8545 2.0968 33 1 1.7838 3.8400 3.9259 34 1 -0.7161 3.1872 3.2630 35 1 2.5759 -0.2192 -1.8347 36 1 1.8324 -2.1776 -3.5299 37 1 3.2854 -2.6915 -2.6394 38 1 2.0492 -4.6476 -1.7494 39 1 0.5958 -4.1344 -2.6397 40 1 1.8321 -4.3415 -4.7788 41 1 3.2858 -4.8550 -3.8890 42 1 2.0508 -6.8115 -2.9983 43 1 0.5967 -6.2988 -3.8878 44 1 0.8683 -9.8973 -4.6232 45 1 3.5242 -1.7291 2.0378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592917786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:58 Heat of formation + Delta-G solvation = -53.944141 kcal Electronic energy + Delta-G solvation = -27281.288442 eV Core-core repulsion = 23300.721655 eV Total energy + Delta-G solvation = -3980.566787 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.84066 -40.83176 -39.46253 -36.76346 -36.21353 -34.90224 -33.43879 -32.64827 -31.23624 -30.18887 -29.26563 -27.29958 -25.74443 -24.90951 -22.82023 -21.67221 -21.44625 -20.51909 -20.18068 -19.99547 -18.51595 -17.73001 -17.51379 -16.86098 -16.20310 -16.04760 -15.70505 -15.40586 -15.16377 -14.63451 -14.48110 -14.21450 -14.07769 -13.69944 -13.64994 -13.20792 -13.03551 -12.66242 -12.62564 -12.40008 -12.15701 -11.96875 -11.72361 -11.68482 -11.60660 -11.01266 -10.94246 -10.71852 -10.56742 -10.49029 -10.43660 -9.96439 -9.69766 -9.64156 -9.51128 -9.24130 -8.99600 -8.97167 -8.31349 -5.95836 -3.98392 1.46988 1.77140 1.98539 2.43895 2.54183 2.78852 2.87106 3.32615 3.39804 3.43543 3.78187 3.95771 4.40416 4.48135 4.49048 4.56579 4.72676 4.78679 5.07567 5.20294 5.25740 5.31468 5.39082 5.39605 5.53751 5.64789 5.66279 5.80350 5.99571 6.10318 6.12422 6.26453 6.27185 6.46729 6.51608 6.55401 6.81307 6.98945 7.14106 7.20702 7.32986 7.65432 7.73673 7.89069 8.04994 8.06539 8.47083 9.09580 9.65319 11.15493 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.001998 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.713663 B =14007.154407 C =14075.255685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.184 3.816 3 C 0.136 3.864 4 N -0.376 5.376 5 C 0.053 3.947 6 C -0.267 4.267 7 C 0.049 3.951 8 N -0.277 5.277 9 N -0.726 5.726 10 C 0.520 3.480 11 O -0.521 6.521 12 C -0.135 4.135 13 C -0.104 4.104 14 C -0.110 4.110 15 C 0.019 3.981 16 C -0.520 4.520 17 H 0.055 0.945 18 C 0.054 3.946 19 N -0.895 5.895 20 Si 0.891 3.109 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C 0.480 3.520 25 O -0.491 6.491 26 O -0.512 6.512 27 H 0.110 0.890 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.173 0.827 33 H 0.148 0.852 34 H 0.184 0.816 35 H 0.406 0.594 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.063 0.937 39 H 0.064 0.936 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.423 29.327 12.352 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.095 3.905 3 C 0.013 3.987 4 N -0.159 5.159 5 C -0.092 4.092 6 C -0.296 4.296 7 C -0.138 4.138 8 N -0.097 5.097 9 N -0.383 5.383 10 C 0.308 3.692 11 O -0.395 6.395 12 C -0.174 4.174 13 C -0.142 4.142 14 C -0.147 4.147 15 C -0.018 4.018 16 C -0.558 4.558 17 H 0.073 0.927 18 C -0.147 4.147 19 N -0.534 5.534 20 Si 0.719 3.281 21 H -0.198 1.198 22 H -0.211 1.211 23 H -0.211 1.211 24 C 0.318 3.682 25 O -0.376 6.376 26 O -0.324 6.324 27 H 0.128 0.872 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.190 0.810 33 H 0.166 0.834 34 H 0.201 0.799 35 H 0.241 0.759 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 3.883 28.210 11.888 30.858 hybrid contribution 1.396 -0.268 0.083 1.424 sum 5.278 27.942 11.971 30.854 Atomic orbital electron populations 1.22488 0.89190 1.05472 1.05372 1.20346 0.97731 0.90160 0.82308 1.21813 1.00208 0.89431 0.87280 1.48329 1.05022 1.42951 1.19647 1.22560 0.98326 0.97359 0.90931 1.21521 0.92559 1.11769 1.03763 1.23986 0.98623 0.96568 0.94619 1.77283 0.95476 1.21003 1.15970 1.46047 1.55406 1.13065 1.23819 1.21228 0.79270 0.80381 0.88308 1.90734 1.36587 1.65423 1.46799 1.21797 1.02605 0.98467 0.94576 1.21469 1.01290 0.91190 1.00246 1.21647 0.99501 0.98888 0.94700 1.19102 0.96491 0.89252 0.96955 1.21315 1.31239 0.96177 1.07068 0.92687 1.25057 0.95307 0.97715 0.96588 1.69990 1.37062 1.10743 1.35619 0.86549 0.78611 0.79664 0.83241 1.19783 1.21068 1.21053 1.23427 0.78936 0.76315 0.89473 1.90734 1.56385 1.55482 1.34978 1.84504 1.34975 1.66959 1.45973 0.87156 0.91206 0.89887 0.87080 0.87122 0.80994 0.83423 0.79894 0.75852 0.88802 0.88765 0.91793 0.91732 0.93415 0.93437 0.96608 0.96578 0.93094 0.73183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.04 7.52 37.15 0.28 -1.76 16 2 C 0.18 1.82 0.85 -132.98 -0.11 1.71 16 3 C 0.14 0.85 5.57 -4.04 -0.02 0.82 16 4 N -0.38 -3.19 3.25 -61.36 -0.20 -3.39 16 5 C 0.05 0.37 11.45 -17.23 -0.20 0.17 16 6 C -0.27 -1.98 10.80 -40.01 -0.43 -2.41 16 7 C 0.05 0.42 12.03 -17.37 -0.21 0.22 16 8 N -0.28 -2.93 9.33 30.62 0.29 -2.64 16 9 N -0.73 -6.37 4.87 -48.68 -0.24 -6.61 16 10 C 0.52 6.74 7.15 -10.98 -0.08 6.66 16 11 O -0.52 -9.17 13.19 5.55 0.07 -9.10 16 12 C -0.13 -1.64 5.70 -27.88 -0.16 -1.80 16 13 C -0.10 -1.81 4.50 -26.73 -0.12 -1.93 16 14 C -0.11 -2.21 5.15 -26.73 -0.14 -2.35 16 15 C 0.02 0.50 4.97 -27.88 -0.14 0.37 16 16 C -0.52 -14.93 9.11 -34.44 -0.31 -15.24 16 17 H 0.05 1.52 7.74 -52.49 -0.41 1.11 16 18 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 19 N -0.89 -27.55 13.29 55.43 0.74 -26.82 16 20 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 23 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 24 C 0.48 5.99 5.40 36.00 0.19 6.19 16 25 O -0.49 -7.82 16.85 -18.76 -0.32 -8.13 16 26 O -0.51 -5.23 13.01 -39.26 -0.51 -5.74 16 27 H 0.11 1.47 4.90 -51.93 -0.25 1.22 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.08 1.28 6.17 -51.93 -0.32 0.96 16 30 H 0.11 0.37 8.07 -51.93 -0.42 -0.05 16 31 H 0.11 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.17 0.60 8.06 -52.48 -0.42 0.18 16 33 H 0.15 0.76 8.06 -52.48 -0.42 0.34 16 34 H 0.18 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.41 1.92 8.47 -40.82 -0.35 1.58 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 37 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.06 1.20 8.10 -51.93 -0.42 0.78 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.05 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 45 H 0.41 2.86 9.10 45.56 0.41 3.28 16 LS Contribution 378.60 15.07 5.71 5.71 Total: -1.00 -39.41 378.60 -6.99 -46.39 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.96 Total: 1.36 kcal Atomic # 6 Polarization: -6.33 SS G_CDS: -1.55 Total: -7.88 kcal Atomic # 7 Polarization: -40.04 SS G_CDS: 0.59 Total: -39.46 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.75 Total: -22.98 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -39.41 -6.99 -46.39 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592917786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.550 kcal (2) G-P(sol) polarization free energy of solvation -39.407 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds