Wall clock time and date at job start Tue Mar 31 2020 13:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52997 * 109.47100 * 2 1 4 4 N 1.46500 * 109.47210 * 60.00399 * 3 2 1 5 5 C 1.34945 * 126.04023 * 124.71128 * 4 3 2 6 6 C 1.35313 * 107.74522 * 179.83760 * 5 4 3 7 7 C 1.39872 * 107.92153 * 0.42886 * 6 5 4 8 8 N 1.30832 * 108.20032 * 359.73239 * 7 6 5 9 9 N 1.46504 * 109.47128 * 240.00549 * 2 1 3 10 10 C 1.34782 * 119.99589 * 299.99788 * 9 2 1 11 11 O 1.21284 * 120.00163 * 0.02562 * 10 9 2 12 12 C 1.50702 * 120.00005 * 180.02562 * 10 9 2 13 13 C 1.52997 * 109.47098 * 179.97438 * 12 10 9 14 14 C 1.53003 * 109.47191 * 179.97438 * 13 12 10 15 15 C 1.52997 * 109.47191 * 179.97438 * 14 13 12 16 16 C 1.50701 * 109.47010 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99763 * 0.02562 * 16 15 14 18 18 C 1.37879 * 120.00248 * 179.97438 * 16 15 14 19 19 N 1.31521 * 119.99468 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00261 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47044 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.46937 * 120.00391 * 20 18 16 23 23 H 1.48500 * 109.46865 * 240.00636 * 20 18 16 24 24 C 1.50697 * 109.47599 * 120.00204 * 2 1 3 25 25 O 1.20833 * 119.99747 * 335.00322 * 24 2 1 26 26 O 1.34230 * 120.00262 * 154.71944 * 24 2 1 27 27 H 1.09004 * 109.47177 * 299.99641 * 1 2 3 28 28 H 1.09003 * 109.47418 * 59.99750 * 1 2 3 29 29 H 1.09000 * 109.47190 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47023 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.47189 * 300.00390 * 3 2 1 32 32 H 1.08004 * 126.12541 * 0.02562 * 5 4 3 33 33 H 1.08007 * 126.03887 * 180.15797 * 6 5 4 34 34 H 1.07997 * 125.89872 * 179.71198 * 7 6 5 35 35 H 0.96990 * 120.00634 * 119.99875 * 9 2 1 36 36 H 1.09003 * 109.46780 * 299.99718 * 12 10 9 37 37 H 1.08997 * 109.47246 * 59.99590 * 12 10 9 38 38 H 1.08994 * 109.47214 * 299.99878 * 13 12 10 39 39 H 1.09004 * 109.47023 * 60.00027 * 13 12 10 40 40 H 1.09003 * 109.46867 * 300.00610 * 14 13 12 41 41 H 1.09004 * 109.46681 * 60.00349 * 14 13 12 42 42 H 1.09003 * 109.47189 * 300.00139 * 15 14 13 43 43 H 1.08997 * 109.47293 * 60.00289 * 15 14 13 44 44 H 0.96999 * 119.99264 * 179.97438 * 19 18 16 45 45 H 0.96699 * 116.99771 * 180.27188 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 1.5517 2.1331 1.1962 5 6 2.3124 2.7662 2.1135 6 6 1.4848 3.2741 3.0559 7 6 0.1742 2.9316 2.7076 8 7 0.2131 2.2476 1.5930 9 7 2.0183 -0.6905 -1.1963 10 6 1.6927 -1.9809 -1.4096 11 8 0.9950 -2.5702 -0.6115 12 6 2.1954 -2.6914 -2.6398 13 6 1.6858 -4.1341 -2.6395 14 6 2.1957 -4.8553 -3.8889 15 6 1.6867 -6.2981 -3.8883 16 6 2.1895 -7.0086 -5.1185 17 1 2.8104 -6.4837 -5.8294 18 6 1.8577 -8.3291 -5.3360 19 7 1.1020 -8.9684 -4.4700 20 14 2.4815 -9.2101 -6.8605 21 1 3.3063 -8.2766 -7.6689 22 1 3.3074 -10.3758 -6.4554 23 1 1.3271 -9.6782 -7.6688 24 6 2.0324 -0.7104 1.2304 25 8 1.3396 -0.7704 2.2186 26 8 3.2471 -1.2815 1.2267 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6765 1.9563 -0.8900 32 1 3.3887 2.8545 2.0968 33 1 1.7838 3.8400 3.9259 34 1 -0.7161 3.1872 3.2630 35 1 2.5759 -0.2192 -1.8347 36 1 1.8324 -2.1776 -3.5299 37 1 3.2854 -2.6915 -2.6394 38 1 2.0492 -4.6476 -1.7494 39 1 0.5958 -4.1344 -2.6397 40 1 1.8321 -4.3415 -4.7788 41 1 3.2858 -4.8550 -3.8890 42 1 2.0508 -6.8115 -2.9983 43 1 0.5967 -6.2988 -3.8878 44 1 0.8683 -9.8973 -4.6232 45 1 3.5242 -1.7291 2.0378 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592917786.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:36:57 Heat of formation + Delta-G solvation = -83.244437 kcal Electronic energy + Delta-G solvation = -27282.558998 eV Core-core repulsion = 23300.721655 eV Total energy + Delta-G solvation = -3981.837343 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.53010 -41.60697 -40.48930 -37.62149 -37.18849 -36.54768 -34.63724 -34.12193 -32.20808 -31.20857 -30.40552 -28.03372 -27.39769 -25.82685 -24.39242 -22.64183 -21.97670 -21.72944 -21.20989 -21.10237 -19.39799 -18.52529 -18.43743 -18.35760 -17.56687 -17.00555 -16.77558 -16.51081 -16.16726 -15.95638 -15.51465 -15.28120 -15.04601 -14.63898 -14.54703 -14.27704 -13.91725 -13.77866 -13.61148 -13.58390 -13.36230 -13.25300 -13.16384 -12.84261 -12.74336 -12.63897 -12.30778 -12.14682 -12.12764 -11.90841 -11.41507 -11.36796 -11.31671 -11.12563 -10.80848 -10.55935 -10.43833 -10.32724 -9.52216 -8.18855 -6.30982 0.91905 0.94629 1.34010 1.40560 1.41510 1.51310 1.54986 1.96657 1.98622 2.10314 2.41926 3.14040 3.15389 3.42230 3.74028 3.85014 4.03725 4.05024 4.08656 4.16939 4.27098 4.35066 4.58632 4.67196 4.71124 4.71571 4.76649 4.86614 4.88728 4.90213 5.13388 5.15563 5.20052 5.25276 5.34385 5.40097 5.46140 5.58178 5.78854 5.80923 5.88746 6.09078 6.25218 6.42085 6.76093 6.80107 6.88288 7.16378 7.38823 8.93590 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.001998 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.713663 B =14007.154407 C =14075.255685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.186 3.814 3 C 0.135 3.865 4 N -0.383 5.383 5 C 0.055 3.945 6 C -0.282 4.282 7 C 0.032 3.968 8 N -0.319 5.319 9 N -0.699 5.699 10 C 0.519 3.481 11 O -0.577 6.577 12 C -0.123 4.123 13 C -0.097 4.097 14 C -0.095 4.095 15 C 0.017 3.983 16 C -0.539 4.539 17 H 0.068 0.932 18 C -0.010 4.010 19 N -0.939 5.939 20 Si 0.971 3.029 21 H -0.255 1.255 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.477 3.523 25 O -0.536 6.536 26 O -0.506 6.506 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.150 0.850 31 H 0.138 0.862 32 H 0.210 0.790 33 H 0.166 0.834 34 H 0.197 0.803 35 H 0.431 0.569 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.039 0.961 39 H 0.040 0.960 40 H 0.063 0.937 41 H 0.063 0.937 42 H -0.018 1.018 43 H -0.017 1.017 44 H 0.262 0.738 45 H 0.422 0.578 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.420 31.694 10.228 34.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.096 3.904 3 C 0.013 3.987 4 N -0.167 5.167 5 C -0.090 4.090 6 C -0.311 4.311 7 C -0.154 4.154 8 N -0.140 5.140 9 N -0.357 5.357 10 C 0.308 3.692 11 O -0.455 6.455 12 C -0.162 4.162 13 C -0.136 4.136 14 C -0.132 4.132 15 C -0.020 4.020 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.207 4.207 19 N -0.580 5.580 20 Si 0.795 3.205 21 H -0.179 1.179 22 H -0.206 1.206 23 H -0.206 1.206 24 C 0.319 3.681 25 O -0.424 6.424 26 O -0.318 6.318 27 H 0.116 0.884 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.168 0.832 31 H 0.155 0.845 32 H 0.226 0.774 33 H 0.183 0.817 34 H 0.213 0.787 35 H 0.272 0.728 36 H 0.145 0.855 37 H 0.144 0.856 38 H 0.058 0.942 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.001 0.999 43 H 0.001 0.999 44 H 0.071 0.929 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges 6.935 30.635 9.732 32.883 hybrid contribution 0.452 -1.032 0.822 1.395 sum 7.387 29.603 10.554 32.284 Atomic orbital electron populations 1.22377 0.91338 1.02752 1.05626 1.20329 0.96228 0.92397 0.81446 1.22116 1.02406 0.86413 0.87747 1.48506 1.04545 1.43162 1.20441 1.23202 0.99880 0.95987 0.89946 1.21863 0.92118 1.12332 1.04754 1.24403 1.00064 0.96348 0.94555 1.77201 0.97287 1.22359 1.17183 1.45673 1.54578 1.11712 1.23745 1.21368 0.78535 0.81432 0.87903 1.90745 1.39139 1.66997 1.48627 1.21674 1.04323 0.94703 0.95505 1.21254 0.99803 0.94680 0.97815 1.21440 1.00231 0.94914 0.96625 1.19077 0.94431 0.93374 0.95156 1.21798 1.31262 0.96818 1.07786 0.91345 1.26129 0.95398 0.98864 1.00282 1.70152 1.38548 1.11235 1.38044 0.85316 0.78162 0.78344 0.78712 1.17867 1.20585 1.20599 1.23979 0.78877 0.75628 0.89665 1.90718 1.57594 1.57249 1.36842 1.84466 1.33940 1.66587 1.46854 0.88430 0.89535 0.93918 0.83192 0.84464 0.77376 0.81675 0.78672 0.72840 0.85503 0.85583 0.94195 0.94120 0.91795 0.91809 0.99911 0.99908 0.92927 0.71732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 7.52 71.98 0.54 -3.48 16 2 C 0.19 3.36 0.85 2.85 0.00 3.36 16 3 C 0.14 1.22 5.57 86.38 0.48 1.70 16 4 N -0.38 -5.73 3.25 -348.06 -1.13 -6.86 16 5 C 0.05 0.62 11.45 83.54 0.96 1.58 16 6 C -0.28 -3.82 10.80 21.99 0.24 -3.58 16 7 C 0.03 0.56 12.03 85.24 1.03 1.59 16 8 N -0.32 -6.70 9.33 -57.03 -0.53 -7.23 16 9 N -0.70 -10.19 4.87 -426.33 -2.08 -12.27 16 10 C 0.52 12.65 7.15 87.66 0.63 13.28 16 11 O -0.58 -20.87 13.19 -3.04 -0.04 -20.91 16 12 C -0.12 -2.64 5.70 29.85 0.17 -2.47 16 13 C -0.10 -3.38 4.50 30.59 0.14 -3.25 16 14 C -0.09 -3.74 5.15 30.59 0.16 -3.58 16 15 C 0.02 0.92 4.97 29.85 0.15 1.06 16 16 C -0.54 -31.04 9.11 25.60 0.23 -30.80 16 17 H 0.07 3.67 7.74 -2.91 -0.02 3.65 16 18 C -0.01 -0.58 5.46 84.65 0.46 -0.12 16 19 N -0.94 -59.38 13.29 21.45 0.28 -59.10 16 20 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 21 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 24 C 0.48 11.63 5.40 71.23 0.38 12.01 16 25 O -0.54 -17.60 16.85 21.94 0.37 -17.23 16 26 O -0.51 -9.52 13.01 -51.41 -0.67 -10.19 16 27 H 0.10 2.73 4.90 -2.39 -0.01 2.71 16 28 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 29 H 0.04 1.40 6.17 -2.39 -0.01 1.38 16 30 H 0.15 0.19 8.07 -2.39 -0.02 0.17 16 31 H 0.14 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.21 0.60 8.06 -2.91 -0.02 0.58 16 33 H 0.17 1.45 8.06 -2.91 -0.02 1.43 16 34 H 0.20 2.46 8.06 -2.91 -0.02 2.43 16 35 H 0.43 1.94 8.47 -92.72 -0.79 1.16 16 36 H 0.13 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 38 H 0.04 1.55 8.10 -2.39 -0.02 1.53 16 39 H 0.04 1.58 8.10 -2.39 -0.02 1.56 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 43 H -0.02 -1.06 8.14 -2.39 -0.02 -1.08 16 44 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 45 H 0.42 5.50 9.10 -74.06 -0.67 4.83 16 Total: -1.00 -92.38 378.60 3.35 -89.03 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -0.44 Total: 10.73 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 5.56 Total: -12.69 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -3.46 Total: -85.46 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.34 Total: -48.33 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -92.38 3.35 -89.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592917786.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.788 kcal (2) G-P(sol) polarization free energy of solvation -92.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds