Wall clock time and date at job start Tue Mar 31 2020 13:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47479 * 2 1 4 4 H 1.08997 * 109.46763 * 55.00043 * 3 2 1 5 5 C 1.52996 * 109.46998 * 295.00363 * 3 2 1 6 6 C 1.52992 * 109.47143 * 175.00209 * 3 2 1 7 7 H 1.08998 * 109.47103 * 305.00021 * 6 3 2 8 8 N 1.46498 * 109.47010 * 185.00304 * 6 3 2 9 9 C 1.34777 * 120.00147 * 155.00023 * 8 6 3 10 10 O 1.21603 * 120.00160 * 0.02562 * 9 8 6 11 11 C 1.47429 * 120.00013 * 179.97438 * 9 8 6 12 12 C 1.41293 * 126.41485 * 0.02562 * 11 9 8 13 13 N 1.30448 * 108.02361 * 179.71995 * 12 11 9 14 14 N 1.39944 * 108.89724 * 0.40720 * 13 12 11 15 15 C 1.46491 * 125.75406 * 179.85047 * 14 13 12 16 16 C 1.50702 * 109.46957 * 269.68786 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.34263 * 108.48668 * 359.58371 * 14 13 12 25 25 C 1.50694 * 126.28514 * 180.26484 * 24 14 13 26 26 C 1.50701 * 109.47386 * 65.00136 * 6 3 2 27 27 O 1.20824 * 119.99974 * 119.99365 * 26 6 3 28 28 O 1.34231 * 119.99873 * 300.00018 * 26 6 3 29 29 H 1.08995 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47194 * 300.00187 * 1 2 3 31 31 H 1.09003 * 109.46965 * 59.99390 * 1 2 3 32 32 H 1.09004 * 109.46976 * 240.00299 * 2 1 3 33 33 H 1.08993 * 109.47364 * 120.00225 * 2 1 3 34 34 H 1.09002 * 109.47457 * 59.99901 * 5 3 2 35 35 H 1.09001 * 109.47424 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47270 * 299.99703 * 5 3 2 37 37 H 0.97008 * 120.00191 * 334.99323 * 8 6 3 38 38 H 1.07999 * 125.98923 * 359.95357 * 12 11 9 39 39 H 1.09004 * 109.47166 * 149.69052 * 15 14 13 40 40 H 1.08994 * 109.47507 * 29.68759 * 15 14 13 41 41 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47548 * 90.00002 * 25 24 14 43 43 H 1.09005 * 109.47060 * 210.00231 * 25 24 14 44 44 H 1.08998 * 109.47841 * 329.99761 * 25 24 14 45 45 H 0.96698 * 116.99991 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4442 0.1257 7 1 3.8570 0.8799 1.0112 8 7 4.0433 2.8237 0.2458 9 6 5.2191 3.0786 0.8533 10 8 5.8830 2.1636 1.3014 11 6 5.7008 4.4668 0.9737 12 6 5.0438 5.6263 0.5044 13 7 5.7825 6.6585 0.8055 14 7 6.9349 6.2146 1.4637 15 6 8.0177 7.0662 1.9622 16 6 9.0603 7.2339 0.8870 17 1 8.9293 6.7544 -0.0718 18 6 10.1785 8.0046 1.1253 19 7 10.3379 8.5888 2.2928 20 14 11.4671 8.2187 -0.2099 21 1 10.8448 8.8487 -1.4020 22 1 12.5624 9.0859 0.2937 23 1 12.0190 6.8914 -0.5828 24 6 6.8780 4.8771 1.5665 25 6 7.9096 3.9875 2.2110 26 6 4.1706 0.8072 -1.0984 27 8 4.9245 1.4406 -1.7987 28 8 3.8724 -0.4637 -1.4108 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.5489 2.1253 -1.3968 35 1 1.9983 3.1543 -1.3072 36 1 2.0699 1.5875 -2.1492 37 1 3.5140 3.5536 -0.1120 38 1 4.0945 5.6536 -0.0097 39 1 8.4707 6.6024 2.8384 40 1 7.6163 8.0423 2.2344 41 1 11.1248 9.1307 2.4606 42 1 7.6728 3.8629 3.2676 43 1 7.9071 3.0139 1.7208 44 1 8.8952 4.4421 2.1108 45 1 4.2855 -0.8290 -2.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001593614186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:19 Heat of formation + Delta-G solvation = -75.327942 kcal Electronic energy + Delta-G solvation = -27737.939679 eV Core-core repulsion = 23756.445621 eV Total energy + Delta-G solvation = -3981.494058 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.06622 -40.57535 -38.71776 -37.09534 -36.22874 -34.06130 -33.72672 -32.06888 -31.20673 -30.19213 -28.28435 -27.05939 -26.53581 -24.41274 -23.52739 -22.71821 -21.56601 -20.23915 -19.88142 -19.02850 -18.10582 -17.45015 -16.85004 -16.64549 -16.11732 -15.74953 -15.24870 -14.89815 -14.72286 -14.50347 -14.27037 -14.09464 -13.82447 -13.57917 -13.24930 -13.15685 -12.59282 -12.47048 -12.42429 -12.24352 -12.07546 -12.04468 -11.79063 -11.69148 -11.46725 -11.22914 -11.12445 -11.03776 -10.86900 -10.84274 -10.68373 -10.36194 -10.18993 -9.94567 -9.50167 -9.22527 -8.69806 -8.58127 -7.93249 -6.32712 -4.40619 2.10737 2.14990 2.63234 2.84735 3.18344 3.21621 3.25135 3.30171 3.50706 3.93017 4.21902 4.25662 4.48391 4.55664 4.91858 4.97280 5.00116 5.05968 5.13748 5.19922 5.26182 5.31602 5.34859 5.55150 5.57817 5.63969 5.68362 5.75781 5.77712 5.93522 5.99874 6.09952 6.10846 6.30542 6.37548 6.53456 6.59193 6.78772 6.90120 7.15810 7.56657 7.59744 7.77801 7.79170 7.79857 8.36951 8.51011 8.65165 9.26390 10.75383 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023601 B = 0.002710 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.109619 B =10327.790975 C =10626.556900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.093 4.093 4 H 0.096 0.904 5 C -0.157 4.157 6 C 0.166 3.834 7 H 0.126 0.874 8 N -0.715 5.715 9 C 0.612 3.388 10 O -0.552 6.552 11 C -0.331 4.331 12 C 0.059 3.941 13 N -0.294 5.294 14 N -0.313 5.313 15 C 0.251 3.749 16 C -0.542 4.542 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.273 1.273 24 C 0.168 3.832 25 C -0.098 4.098 26 C 0.465 3.535 27 O -0.499 6.499 28 O -0.515 6.515 29 H 0.055 0.945 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.404 0.596 38 H 0.175 0.825 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.270 0.730 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.083 0.917 45 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.657 -16.655 -3.591 25.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.163 4.163 3 C -0.112 4.112 4 H 0.114 0.886 5 C -0.215 4.215 6 C 0.058 3.942 7 H 0.143 0.857 8 N -0.369 5.369 9 C 0.404 3.596 10 O -0.431 6.431 11 C -0.346 4.346 12 C -0.128 4.128 13 N -0.114 5.114 14 N -0.090 5.090 15 C 0.134 3.866 16 C -0.580 4.580 17 H 0.083 0.917 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.735 3.265 21 H -0.199 1.199 22 H -0.209 1.209 23 H -0.198 1.198 24 C 0.031 3.969 25 C -0.156 4.156 26 C 0.305 3.695 27 O -0.385 6.385 28 O -0.327 6.327 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.240 0.760 38 H 0.192 0.808 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.096 0.904 43 H 0.113 0.887 44 H 0.102 0.898 45 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges -17.773 -15.389 -3.001 23.701 hybrid contribution 0.731 -0.406 -1.512 1.728 sum -17.043 -15.795 -4.514 23.671 Atomic orbital electron populations 1.21808 0.95506 1.01748 1.01875 1.21703 0.95936 0.94632 1.04038 1.21433 0.90858 0.98762 1.00184 0.88625 1.22006 1.02437 1.00650 0.96360 1.20436 0.94129 0.84828 0.94847 0.85675 1.45511 1.23493 1.06423 1.61434 1.17339 0.79120 0.87758 0.75395 1.90691 1.55822 1.46557 1.49996 1.19547 1.00972 0.92987 1.21109 1.23702 0.99478 0.89745 0.99852 1.77139 0.95632 1.23325 1.15327 1.49379 1.15875 1.04634 1.39139 1.19851 0.81049 0.90145 0.95522 1.21231 1.04351 1.32616 0.99803 0.91679 1.24920 0.97977 0.94576 0.96133 1.69907 1.29139 1.31648 1.22006 0.86380 0.80279 0.78459 0.81412 1.19886 1.20862 1.19825 1.21463 0.94953 0.85602 0.94881 1.20620 0.96248 0.98643 1.00125 1.24150 0.78791 0.79620 0.86951 1.90763 1.33505 1.63375 1.50819 1.84589 1.69115 1.29662 1.49297 0.92611 0.92738 0.92531 0.89656 0.91362 0.91146 0.92160 0.92624 0.75970 0.80807 0.92534 0.92458 0.92055 0.90428 0.88664 0.89836 0.73737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 9.67 37.16 0.36 -0.43 16 2 C -0.13 -0.78 4.88 -26.73 -0.13 -0.91 16 3 C -0.09 -0.66 2.32 -90.62 -0.21 -0.87 16 4 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 5 C -0.16 -1.07 8.50 37.16 0.32 -0.76 16 6 C 0.17 1.75 2.29 -69.09 -0.16 1.59 16 7 H 0.13 1.38 7.58 -51.93 -0.39 0.99 16 8 N -0.72 -8.99 4.53 -56.01 -0.25 -9.24 16 9 C 0.61 10.41 7.64 -12.52 -0.10 10.32 16 10 O -0.55 -10.63 14.50 5.27 0.08 -10.56 16 11 C -0.33 -6.20 6.13 -105.07 -0.64 -6.84 16 12 C 0.06 1.05 11.50 -16.98 -0.20 0.86 16 13 N -0.29 -6.41 12.50 30.86 0.39 -6.02 16 14 N -0.31 -7.19 3.56 -57.78 -0.21 -7.39 16 15 C 0.25 6.31 5.78 -5.20 -0.03 6.28 16 16 C -0.54 -14.78 9.39 -34.44 -0.32 -15.10 16 17 H 0.06 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 19 N -0.89 -24.74 13.29 55.43 0.74 -24.00 16 20 Si 0.91 21.11 29.54 -169.99 -5.02 16.09 16 21 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.17 3.50 7.01 -81.60 -0.57 2.93 16 25 C -0.10 -1.82 9.34 36.00 0.34 -1.48 16 26 C 0.47 5.54 6.13 36.01 0.22 5.76 16 27 O -0.50 -8.05 17.08 -18.75 -0.32 -8.37 16 28 O -0.51 -4.25 10.65 -39.26 -0.42 -4.67 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.28 6.56 -51.93 -0.34 -0.06 16 32 H 0.09 0.57 5.77 -51.93 -0.30 0.27 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.07 0.38 6.57 -51.93 -0.34 0.04 16 35 H 0.06 0.41 6.77 -51.93 -0.35 0.06 16 36 H 0.05 0.44 7.07 -51.93 -0.37 0.07 16 37 H 0.40 4.18 6.13 -40.82 -0.25 3.93 16 38 H 0.17 2.21 7.50 -52.49 -0.39 1.81 16 39 H 0.06 1.40 7.62 -51.93 -0.40 1.01 16 40 H 0.06 1.52 8.14 -51.93 -0.42 1.10 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 43 H 0.09 1.76 6.50 -51.93 -0.34 1.42 16 44 H 0.08 1.61 7.70 -51.93 -0.40 1.21 16 45 H 0.40 1.93 9.10 45.56 0.41 2.35 16 LS Contribution 372.86 15.07 5.62 5.62 Total: -1.00 -34.08 372.86 -6.16 -40.25 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -5.54 Total: 5.22 kcal Atomic # 6 Polarization: 4.30 SS G_CDS: -1.22 Total: 3.08 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.66 Total: -46.66 kcal Atomic # 8 Polarization: -22.93 SS G_CDS: -0.66 Total: -23.59 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.08 -6.16 -40.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593614186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.081 kcal (2) G-P(sol) polarization free energy of solvation -34.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds