Wall clock time and date at job start Tue Mar 31 2020 13:30:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47479 * 2 1 4 4 H 1.08997 * 109.46763 * 55.00043 * 3 2 1 5 5 C 1.52996 * 109.46998 * 295.00363 * 3 2 1 6 6 C 1.52992 * 109.47143 * 175.00209 * 3 2 1 7 7 H 1.08998 * 109.47103 * 305.00021 * 6 3 2 8 8 N 1.46498 * 109.47010 * 185.00304 * 6 3 2 9 9 C 1.34777 * 120.00147 * 155.00023 * 8 6 3 10 10 O 1.21603 * 120.00160 * 0.02562 * 9 8 6 11 11 C 1.47429 * 120.00013 * 179.97438 * 9 8 6 12 12 C 1.41293 * 126.41485 * 0.02562 * 11 9 8 13 13 N 1.30448 * 108.02361 * 179.71995 * 12 11 9 14 14 N 1.39944 * 108.89724 * 0.40720 * 13 12 11 15 15 C 1.46491 * 125.75406 * 179.85047 * 14 13 12 16 16 C 1.50702 * 109.46957 * 269.68786 * 15 14 13 17 17 H 1.08002 * 120.00299 * 0.02562 * 16 15 14 18 18 C 1.37884 * 119.99942 * 179.72213 * 16 15 14 19 19 N 1.31514 * 119.99698 * 0.28408 * 18 16 15 20 20 Si 1.86794 * 119.99837 * 180.27476 * 18 16 15 21 21 H 1.48504 * 109.47196 * 60.00645 * 20 18 16 22 22 H 1.48504 * 109.46887 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47679 * 300.00280 * 20 18 16 24 24 C 1.34263 * 108.48668 * 359.58371 * 14 13 12 25 25 C 1.50694 * 126.28514 * 180.26484 * 24 14 13 26 26 C 1.50701 * 109.47386 * 65.00136 * 6 3 2 27 27 O 1.20824 * 119.99974 * 119.99365 * 26 6 3 28 28 O 1.34231 * 119.99873 * 300.00018 * 26 6 3 29 29 H 1.08995 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.09007 * 109.47194 * 300.00187 * 1 2 3 31 31 H 1.09003 * 109.46965 * 59.99390 * 1 2 3 32 32 H 1.09004 * 109.46976 * 240.00299 * 2 1 3 33 33 H 1.08993 * 109.47364 * 120.00225 * 2 1 3 34 34 H 1.09002 * 109.47457 * 59.99901 * 5 3 2 35 35 H 1.09001 * 109.47424 * 179.97438 * 5 3 2 36 36 H 1.09006 * 109.47270 * 299.99703 * 5 3 2 37 37 H 0.97008 * 120.00191 * 334.99323 * 8 6 3 38 38 H 1.07999 * 125.98923 * 359.95357 * 12 11 9 39 39 H 1.09004 * 109.47166 * 149.69052 * 15 14 13 40 40 H 1.08994 * 109.47507 * 29.68759 * 15 14 13 41 41 H 0.97005 * 119.99651 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.47548 * 90.00002 * 25 24 14 43 43 H 1.09005 * 109.47060 * 210.00231 * 25 24 14 44 44 H 1.08998 * 109.47841 * 329.99761 * 25 24 14 45 45 H 0.96698 * 116.99991 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5648 1.4442 0.1257 7 1 3.8570 0.8799 1.0112 8 7 4.0433 2.8237 0.2458 9 6 5.2191 3.0786 0.8533 10 8 5.8830 2.1636 1.3014 11 6 5.7008 4.4668 0.9737 12 6 5.0438 5.6263 0.5044 13 7 5.7825 6.6585 0.8055 14 7 6.9349 6.2146 1.4637 15 6 8.0177 7.0662 1.9622 16 6 9.0603 7.2339 0.8870 17 1 8.9293 6.7544 -0.0718 18 6 10.1785 8.0046 1.1253 19 7 10.3379 8.5888 2.2928 20 14 11.4671 8.2187 -0.2099 21 1 10.8448 8.8487 -1.4020 22 1 12.5624 9.0859 0.2937 23 1 12.0190 6.8914 -0.5828 24 6 6.8780 4.8771 1.5665 25 6 7.9096 3.9875 2.2110 26 6 4.1706 0.8072 -1.0984 27 8 4.9245 1.4406 -1.7987 28 8 3.8724 -0.4637 -1.4108 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5138 0.8899 34 1 0.5489 2.1253 -1.3968 35 1 1.9983 3.1543 -1.3072 36 1 2.0699 1.5875 -2.1492 37 1 3.5140 3.5536 -0.1120 38 1 4.0945 5.6536 -0.0097 39 1 8.4707 6.6024 2.8384 40 1 7.6163 8.0423 2.2344 41 1 11.1248 9.1307 2.4606 42 1 7.6728 3.8629 3.2676 43 1 7.9071 3.0139 1.7208 44 1 8.8952 4.4421 2.1108 45 1 4.2855 -0.8290 -2.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593614186.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:18 Heat of formation + Delta-G solvation = -99.010925 kcal Electronic energy + Delta-G solvation = -27738.966650 eV Core-core repulsion = 23756.445621 eV Total energy + Delta-G solvation = -3982.521029 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.40263 -41.72900 -39.94273 -37.89157 -37.13286 -35.84243 -34.90620 -33.78970 -32.78495 -30.99077 -29.39232 -28.61590 -27.92832 -25.42898 -24.97649 -23.94367 -22.64042 -21.21966 -21.06304 -20.44239 -19.00768 -18.88778 -18.68081 -17.74256 -17.10946 -16.88560 -16.68461 -16.32559 -16.13019 -15.56332 -15.42966 -15.20211 -14.92633 -14.73267 -14.39748 -14.21394 -14.09305 -13.97295 -13.65723 -13.60501 -13.12542 -12.99515 -12.91944 -12.80297 -12.72572 -12.69813 -12.47633 -12.31926 -11.90615 -11.89312 -11.76811 -11.69916 -11.51984 -11.31857 -10.91271 -10.77489 -10.34953 -10.27736 -9.49955 -8.39423 -6.55773 0.62712 1.20906 1.26710 1.36697 1.37228 1.45991 1.58854 1.88741 2.30130 2.34730 2.60380 2.92561 3.52268 3.71043 3.72578 3.86811 4.01031 4.10145 4.19540 4.24829 4.38467 4.51746 4.58813 4.64100 4.65820 4.77814 4.78145 4.82869 4.89261 5.03222 5.06987 5.12840 5.15487 5.19992 5.31914 5.34722 5.47331 5.54237 5.61713 5.64300 5.64803 5.73492 6.02575 6.46820 6.52935 6.81699 6.98359 7.15211 7.23535 8.68217 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.023601 B = 0.002710 C = 0.002634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.109619 B =10327.790975 C =10626.556900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.123 4.123 3 C -0.083 4.083 4 H 0.111 0.889 5 C -0.158 4.158 6 C 0.161 3.839 7 H 0.123 0.877 8 N -0.698 5.698 9 C 0.613 3.387 10 O -0.578 6.578 11 C -0.331 4.331 12 C 0.081 3.919 13 N -0.334 5.334 14 N -0.338 5.338 15 C 0.268 3.732 16 C -0.559 4.559 17 H 0.049 0.951 18 C 0.026 3.974 19 N -0.915 5.915 20 Si 0.969 3.031 21 H -0.274 1.274 22 H -0.271 1.271 23 H -0.269 1.269 24 C 0.148 3.852 25 C -0.090 4.090 26 C 0.471 3.529 27 O -0.547 6.547 28 O -0.500 6.500 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.043 0.957 37 H 0.416 0.584 38 H 0.226 0.774 39 H 0.052 0.948 40 H 0.034 0.966 41 H 0.275 0.725 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.069 0.931 45 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.469 -17.874 -4.491 27.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C -0.102 4.102 4 H 0.129 0.871 5 C -0.215 4.215 6 C 0.054 3.946 7 H 0.141 0.859 8 N -0.351 5.351 9 C 0.403 3.597 10 O -0.459 6.459 11 C -0.347 4.347 12 C -0.106 4.106 13 N -0.154 5.154 14 N -0.115 5.115 15 C 0.149 3.851 16 C -0.597 4.597 17 H 0.067 0.933 18 C -0.176 4.176 19 N -0.552 5.552 20 Si 0.793 3.207 21 H -0.199 1.199 22 H -0.195 1.195 23 H -0.193 1.193 24 C 0.012 3.988 25 C -0.148 4.148 26 C 0.313 3.687 27 O -0.437 6.437 28 O -0.313 6.313 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.079 0.921 36 H 0.062 0.938 37 H 0.255 0.745 38 H 0.242 0.758 39 H 0.070 0.930 40 H 0.052 0.948 41 H 0.084 0.916 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.088 0.912 45 H 0.283 0.717 Dipole moment (debyes) X Y Z Total from point charges -19.642 -16.649 -3.916 26.044 hybrid contribution 1.152 -0.180 -1.263 1.719 sum -18.490 -16.829 -5.178 25.533 Atomic orbital electron populations 1.21791 0.94422 1.02180 1.02317 1.21689 0.96785 0.93827 1.03823 1.21450 0.87958 0.99743 1.01035 0.87071 1.22034 1.03597 1.00354 0.95560 1.20733 0.96336 0.83326 0.94246 0.85917 1.45319 1.21930 1.08050 1.59836 1.17155 0.80140 0.86613 0.75793 1.90676 1.56953 1.46913 1.51354 1.19860 1.00318 0.94400 1.20096 1.24488 1.00182 0.88169 0.97795 1.77091 0.96068 1.25253 1.16938 1.49119 1.16269 1.05079 1.40998 1.19367 0.81319 0.89447 0.94923 1.21369 1.05551 1.33061 0.99693 0.93269 1.25702 0.99689 0.94005 0.98202 1.69982 1.29875 1.31931 1.23438 0.85437 0.77994 0.78637 0.78645 1.19888 1.19503 1.19346 1.21957 0.96323 0.85114 0.95439 1.20585 0.95107 0.97963 1.01165 1.24330 0.77653 0.80148 0.86610 1.90754 1.35721 1.64669 1.52549 1.84551 1.68634 1.27916 1.50182 0.92271 0.92280 0.92087 0.90144 0.91354 0.89327 0.92140 0.93787 0.74522 0.75760 0.93049 0.94835 0.91584 0.88600 0.88637 0.91201 0.71729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.67 71.98 0.70 -0.42 16 2 C -0.12 -1.21 4.88 30.59 0.15 -1.06 16 3 C -0.08 -0.94 2.32 -10.80 -0.03 -0.97 16 4 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 5 C -0.16 -1.71 8.50 71.98 0.61 -1.10 16 6 C 0.16 3.08 2.29 44.24 0.10 3.18 16 7 H 0.12 2.49 7.58 -2.39 -0.02 2.48 16 8 N -0.70 -16.15 4.53 -449.39 -2.04 -18.19 16 9 C 0.61 20.13 7.64 86.66 0.66 20.79 16 10 O -0.58 -21.93 14.50 -4.04 -0.06 -21.99 16 11 C -0.33 -12.18 6.13 -20.15 -0.12 -12.30 16 12 C 0.08 2.73 11.50 85.65 0.99 3.72 16 13 N -0.33 -14.56 12.50 -56.27 -0.70 -15.26 16 14 N -0.34 -15.87 3.56 -336.72 -1.20 -17.07 16 15 C 0.27 14.01 5.78 85.64 0.50 14.51 16 16 C -0.56 -31.37 9.39 25.60 0.24 -31.13 16 17 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 18 C 0.03 1.41 5.46 84.66 0.46 1.87 16 19 N -0.91 -51.54 13.29 21.45 0.28 -51.26 16 20 Si 0.97 43.43 29.54 68.60 2.03 45.45 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 24 C 0.15 6.23 7.01 42.14 0.30 6.52 16 25 C -0.09 -3.41 9.34 71.23 0.67 -2.74 16 26 C 0.47 10.52 6.13 71.24 0.44 10.96 16 27 O -0.55 -17.23 17.08 21.97 0.38 -16.85 16 28 O -0.50 -7.31 10.65 -51.42 -0.55 -7.85 16 29 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 31 H 0.06 0.41 6.56 -2.39 -0.02 0.39 16 32 H 0.08 0.88 5.77 -2.38 -0.01 0.86 16 33 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.09 0.65 6.57 -2.39 -0.02 0.64 16 35 H 0.06 0.65 6.77 -2.39 -0.02 0.64 16 36 H 0.04 0.59 7.07 -2.38 -0.02 0.57 16 37 H 0.42 7.42 6.13 -92.70 -0.57 6.85 16 38 H 0.23 4.90 7.50 -2.91 -0.02 4.87 16 39 H 0.05 2.68 7.62 -2.38 -0.02 2.66 16 40 H 0.03 1.87 8.14 -2.39 -0.02 1.86 16 41 H 0.28 14.49 8.31 -92.70 -0.77 13.72 16 42 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 43 H 0.10 3.58 6.50 -2.38 -0.02 3.57 16 44 H 0.07 2.79 7.70 -2.39 -0.02 2.77 16 45 H 0.42 3.23 9.10 -74.06 -0.67 2.55 16 Total: -1.00 -75.25 372.86 3.59 -71.66 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: -0.20 Total: 19.53 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 5.65 Total: 11.84 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -3.66 Total: -101.78 kcal Atomic # 8 Polarization: -46.46 SS G_CDS: -0.23 Total: -46.69 kcal Atomic # 14 Polarization: 43.43 SS G_CDS: 2.03 Total: 45.45 kcal Total: -75.25 3.59 -71.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593614186.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.356 kcal (2) G-P(sol) polarization free energy of solvation -75.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds