Wall clock time and date at job start Tue Mar 31 2020 13:30:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.53003 * 109.47015 * 2 1 4 4 H 1.08999 * 109.46942 * 54.44727 * 3 2 1 5 5 C 1.52999 * 109.46999 * 294.44097 * 3 2 1 6 6 C 1.53007 * 109.47268 * 174.44258 * 3 2 1 7 7 H 1.09000 * 109.47005 * 301.65262 * 6 3 2 8 8 N 1.46506 * 109.46674 * 61.64520 * 6 3 2 9 9 C 1.34778 * 119.99383 * 205.27632 * 8 6 3 10 10 O 1.21607 * 120.00407 * 359.72290 * 9 8 6 11 11 C 1.47434 * 119.99671 * 179.72926 * 9 8 6 12 12 C 1.41289 * 126.41135 * 359.68125 * 11 9 8 13 13 N 1.30457 * 108.01891 * 179.85778 * 12 11 9 14 14 N 1.39937 * 108.89597 * 0.41088 * 13 12 11 15 15 C 1.46494 * 125.75113 * 179.73849 * 14 13 12 16 16 C 1.50708 * 109.47176 * 269.99844 * 15 14 13 17 17 H 1.08004 * 119.99511 * 0.02562 * 16 15 14 18 18 C 1.37869 * 120.00226 * 180.02562 * 16 15 14 19 19 N 1.31510 * 119.99902 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00131 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.46887 * 89.99917 * 20 18 16 22 22 H 1.48498 * 109.47104 * 209.99735 * 20 18 16 23 23 H 1.48507 * 109.47013 * 329.99902 * 20 18 16 24 24 C 1.34259 * 108.49180 * 359.73661 * 14 13 12 25 25 C 1.50700 * 126.28996 * 179.97438 * 24 14 13 26 26 C 1.50690 * 109.47182 * 181.64398 * 6 3 2 27 27 O 1.20821 * 120.00437 * 262.54617 * 26 6 3 28 28 O 1.34229 * 119.99902 * 82.54498 * 26 6 3 29 29 H 1.09002 * 109.47297 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47274 * 300.00059 * 1 2 3 31 31 H 1.09000 * 109.47297 * 60.00004 * 1 2 3 32 32 H 1.09000 * 109.47274 * 239.99941 * 2 1 3 33 33 H 1.09000 * 109.47297 * 119.99995 * 2 1 3 34 34 H 1.09000 * 109.46989 * 60.00648 * 5 3 2 35 35 H 1.09001 * 109.47026 * 179.97438 * 5 3 2 36 36 H 1.08990 * 109.47278 * 299.99825 * 5 3 2 37 37 H 0.96996 * 120.00256 * 25.00531 * 8 6 3 38 38 H 1.07997 * 125.99169 * 0.02562 * 12 11 9 39 39 H 1.09000 * 109.47829 * 29.99629 * 15 14 13 40 40 H 1.09005 * 109.47133 * 150.00145 * 15 14 13 41 41 H 0.97002 * 120.00388 * 180.02562 * 19 18 16 42 42 H 1.09001 * 109.47023 * 270.00050 * 25 24 14 43 43 H 1.08997 * 109.47063 * 29.99908 * 25 24 14 44 44 H 1.09004 * 109.47131 * 149.99875 * 25 24 14 45 45 H 0.96700 * 117.00648 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5976 1.9842 0.8361 5 6 1.6472 2.1223 -1.3132 6 6 3.5636 1.4449 0.1397 7 1 3.8447 0.9346 1.0610 8 7 4.1598 0.7507 -1.0044 9 6 5.3748 0.1792 -0.8872 10 8 5.9783 0.2440 0.1665 11 6 5.9723 -0.5246 -2.0368 12 6 5.3919 -0.6869 -3.3147 13 7 6.2280 -1.3613 -4.0549 14 7 7.3624 -1.6664 -3.2944 15 6 8.5294 -2.4186 -3.7618 16 6 8.3192 -3.8873 -3.4974 17 1 7.4073 -4.2265 -3.0286 18 6 9.2910 -4.7979 -3.8541 19 7 9.1077 -6.0795 -3.6230 20 14 10.8685 -4.2112 -4.6644 21 1 11.8811 -3.9146 -3.6194 22 1 11.3850 -5.2709 -5.5675 23 1 10.5936 -2.9816 -5.4505 24 6 7.2008 -1.1535 -2.0642 25 6 8.1803 -1.2477 -0.9228 26 6 4.0621 2.8663 0.1803 27 8 4.4842 3.3875 -0.8247 28 8 4.0372 3.5536 1.3330 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5617 2.1207 -1.4127 35 1 2.0101 3.1501 -1.3131 36 1 2.0895 1.5806 -2.1492 37 1 3.6785 0.6990 -1.8450 38 1 4.4266 -0.3152 -3.6252 39 1 8.6611 -2.2572 -4.8317 40 1 9.4181 -2.0774 -3.2307 41 1 9.7916 -6.7202 -3.8736 42 1 7.9746 -2.1460 -0.3407 43 1 9.1950 -1.2953 -1.3179 44 1 8.0798 -0.3700 -0.2843 45 1 4.3678 4.4621 1.3098 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594912857.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:25 Heat of formation + Delta-G solvation = -70.689024 kcal Electronic energy + Delta-G solvation = -27858.542591 eV Core-core repulsion = 23877.249691 eV Total energy + Delta-G solvation = -3981.292900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.12205 -40.62778 -38.86787 -37.22122 -36.19072 -34.03906 -33.61836 -32.18831 -31.37282 -30.42449 -28.43596 -27.44452 -26.61457 -24.74819 -23.26638 -22.44631 -21.53795 -20.35750 -19.84077 -19.05805 -18.24347 -17.43699 -17.23356 -16.88298 -16.08536 -15.74560 -15.28263 -14.95787 -14.88015 -14.38872 -14.34132 -14.11157 -13.83198 -13.72047 -13.35819 -13.17772 -12.70722 -12.57108 -12.42702 -12.36560 -12.29264 -12.10633 -11.87324 -11.65773 -11.62924 -11.41224 -11.24284 -11.13442 -10.91379 -10.85055 -10.67343 -10.41841 -10.27216 -9.80884 -9.57945 -9.25040 -8.85895 -8.67303 -8.01120 -6.33909 -4.38679 1.98334 2.07794 2.61505 2.74158 3.05646 3.11640 3.18020 3.21448 3.42895 3.84936 4.15012 4.23736 4.46833 4.49715 4.88064 4.94860 5.00546 5.05741 5.10029 5.14616 5.19472 5.26284 5.33659 5.49195 5.55239 5.62875 5.64706 5.69582 5.78574 5.81986 5.99266 6.02350 6.04985 6.23567 6.28298 6.32971 6.42886 6.50030 6.57511 6.98481 7.17144 7.51783 7.55832 7.73926 8.18649 8.24625 8.43506 8.69040 9.20014 10.78278 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.019760 B = 0.002955 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1416.639404 B = 9473.011673 C =10046.874962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.092 4.092 4 H 0.095 0.905 5 C -0.158 4.158 6 C 0.165 3.835 7 H 0.124 0.876 8 N -0.711 5.711 9 C 0.609 3.391 10 O -0.551 6.551 11 C -0.329 4.329 12 C 0.064 3.936 13 N -0.291 5.291 14 N -0.313 5.313 15 C 0.224 3.776 16 C -0.545 4.545 17 H 0.082 0.918 18 C 0.082 3.918 19 N -0.883 5.883 20 Si 0.872 3.128 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.263 1.263 24 C 0.171 3.829 25 C -0.095 4.095 26 C 0.468 3.532 27 O -0.504 6.504 28 O -0.516 6.516 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.061 0.939 37 H 0.405 0.595 38 H 0.177 0.823 39 H 0.055 0.945 40 H 0.048 0.952 41 H 0.270 0.730 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.094 0.906 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.462 16.746 8.354 23.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.110 4.110 4 H 0.113 0.887 5 C -0.215 4.215 6 C 0.057 3.943 7 H 0.142 0.858 8 N -0.366 5.366 9 C 0.400 3.600 10 O -0.430 6.430 11 C -0.344 4.344 12 C -0.124 4.124 13 N -0.110 5.110 14 N -0.089 5.089 15 C 0.106 3.894 16 C -0.583 4.583 17 H 0.100 0.900 18 C -0.123 4.123 19 N -0.519 5.519 20 Si 0.698 3.302 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.188 1.188 24 C 0.034 3.966 25 C -0.153 4.153 26 C 0.308 3.692 27 O -0.391 6.391 28 O -0.328 6.328 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.080 0.920 37 H 0.242 0.758 38 H 0.194 0.806 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.080 0.920 42 H 0.107 0.893 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -13.610 15.720 7.542 22.118 hybrid contribution 0.703 1.057 -0.220 1.289 sum -12.907 16.777 7.322 22.398 Atomic orbital electron populations 1.21814 0.95283 1.02027 1.01896 1.21565 0.96172 0.94473 1.03417 1.21435 0.90554 0.98765 1.00294 0.88700 1.21988 1.02302 1.00711 0.96508 1.20376 0.93836 0.86367 0.93674 0.85819 1.45546 1.20111 1.56163 1.14778 1.17363 0.79484 0.76292 0.86839 1.90710 1.61281 1.61603 1.29386 1.19531 0.99136 1.19310 0.96406 1.23733 0.99237 0.97909 0.91499 1.77160 0.94832 1.18955 1.20066 1.48904 1.15136 1.37715 1.07146 1.20167 0.79740 0.92371 0.97171 1.21083 1.06593 0.87713 1.42934 0.89996 1.24782 0.98159 0.94636 0.94743 1.69858 1.34897 1.01187 1.45967 0.86912 0.83678 0.79387 0.80254 1.19489 1.20346 1.18771 1.21461 0.95207 0.91738 0.88156 1.20604 0.95917 1.04679 0.94063 1.24187 0.74859 0.89666 0.80490 1.90720 1.42713 1.70006 1.35611 1.84536 1.78727 1.31805 1.37693 0.92394 0.92693 0.92392 0.91019 0.91154 0.91233 0.92333 0.92006 0.75759 0.80588 0.92675 0.93405 0.91957 0.89347 0.91052 0.88714 0.73395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.68 37.15 0.36 -0.55 16 2 C -0.12 -0.84 5.18 -26.73 -0.14 -0.98 16 3 C -0.09 -0.66 2.21 -90.62 -0.20 -0.86 16 4 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.16 -1.11 8.52 37.16 0.32 -0.79 16 6 C 0.17 1.73 2.21 -69.08 -0.15 1.57 16 7 H 0.12 1.36 7.57 -51.93 -0.39 0.97 16 8 N -0.71 -8.68 4.01 -56.00 -0.22 -8.90 16 9 C 0.61 9.95 7.78 -12.52 -0.10 9.85 16 10 O -0.55 -10.19 14.50 5.27 0.08 -10.12 16 11 C -0.33 -5.94 6.13 -105.07 -0.64 -6.58 16 12 C 0.06 1.09 11.50 -16.98 -0.20 0.90 16 13 N -0.29 -6.13 12.50 30.86 0.39 -5.75 16 14 N -0.31 -6.90 3.56 -57.77 -0.21 -7.11 16 15 C 0.22 5.22 5.04 -5.19 -0.03 5.20 16 16 C -0.55 -14.87 9.94 -34.44 -0.34 -15.21 16 17 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 18 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 19 N -0.88 -25.74 13.96 55.43 0.77 -24.97 16 20 Si 0.87 19.74 27.47 -169.99 -4.67 15.07 16 21 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 24 C 0.17 3.43 7.01 -81.60 -0.57 2.86 16 25 C -0.09 -1.67 9.57 36.01 0.34 -1.33 16 26 C 0.47 5.44 6.51 36.00 0.23 5.68 16 27 O -0.50 -7.35 16.89 -18.75 -0.32 -7.67 16 28 O -0.52 -4.63 13.42 -39.26 -0.53 -5.16 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.31 6.58 -51.93 -0.34 -0.03 16 32 H 0.07 0.56 7.74 -51.93 -0.40 0.15 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.39 6.58 -51.93 -0.34 0.05 16 35 H 0.06 0.48 6.96 -51.93 -0.36 0.12 16 36 H 0.06 0.44 6.43 -51.93 -0.33 0.10 16 37 H 0.41 4.17 5.62 -40.82 -0.23 3.94 16 38 H 0.18 2.16 7.50 -52.49 -0.39 1.77 16 39 H 0.06 1.29 7.20 -51.93 -0.37 0.91 16 40 H 0.05 1.03 6.44 -51.93 -0.33 0.69 16 41 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 43 H 0.07 1.18 7.05 -51.93 -0.37 0.82 16 44 H 0.09 1.60 6.50 -51.93 -0.34 1.27 16 45 H 0.41 2.03 9.10 45.56 0.41 2.44 16 LS Contribution 372.17 15.07 5.61 5.61 Total: -1.00 -34.52 372.17 -5.81 -40.33 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -5.50 Total: 6.76 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: -1.21 Total: 1.89 kcal Atomic # 7 Polarization: -47.45 SS G_CDS: 0.73 Total: -46.72 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.77 Total: -22.94 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -4.67 Total: 15.07 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.52 -5.81 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594912857.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.360 kcal (2) G-P(sol) polarization free energy of solvation -34.522 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds