Wall clock time and date at job start Tue Mar 31 2020 13:30:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47369 * 2 1 4 4 H 1.08999 * 109.46785 * 305.81703 * 3 2 1 5 5 C 1.53000 * 109.46989 * 65.81611 * 3 2 1 6 6 C 1.53004 * 109.47200 * 185.81721 * 3 2 1 7 7 H 1.09003 * 109.46706 * 57.73224 * 6 3 2 8 8 N 1.46501 * 109.46881 * 297.73091 * 6 3 2 9 9 C 1.34773 * 119.99469 * 154.99941 * 8 6 3 10 10 O 1.21606 * 120.00352 * 359.97438 * 9 8 6 11 11 C 1.47429 * 119.99821 * 179.97438 * 9 8 6 12 12 C 1.41287 * 126.41545 * 359.69129 * 11 9 8 13 13 N 1.30458 * 108.02474 * 179.85241 * 12 11 9 14 14 N 1.39927 * 108.89335 * 0.41075 * 13 12 11 15 15 C 1.46498 * 125.75154 * 179.74089 * 14 13 12 16 16 C 1.50707 * 109.46805 * 269.99205 * 15 14 13 17 17 H 1.07999 * 119.99918 * 0.02562 * 16 15 14 18 18 C 1.37876 * 119.99704 * 179.97438 * 16 15 14 19 19 N 1.31510 * 120.00498 * 0.02562 * 18 16 15 20 20 Si 1.86800 * 119.99720 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47154 * 90.00215 * 20 18 16 22 22 H 1.48500 * 109.47336 * 210.00443 * 20 18 16 23 23 H 1.48499 * 109.47405 * 330.00766 * 20 18 16 24 24 C 1.34261 * 108.49609 * 359.73056 * 14 13 12 25 25 C 1.50694 * 126.29246 * 179.97438 * 24 14 13 26 26 C 1.50697 * 109.46744 * 177.73065 * 6 3 2 27 27 O 1.20824 * 119.99998 * 97.18737 * 26 6 3 28 28 O 1.34223 * 120.00117 * 277.45232 * 26 6 3 29 29 H 1.08999 * 109.47602 * 300.00421 * 1 2 3 30 30 H 1.08999 * 109.47186 * 60.00055 * 1 2 3 31 31 H 1.08997 * 109.47401 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47602 * 239.99578 * 2 1 3 33 33 H 1.09007 * 109.46594 * 120.00030 * 2 1 3 34 34 H 1.09006 * 109.47077 * 60.00075 * 5 3 2 35 35 H 1.08997 * 109.47297 * 179.97438 * 5 3 2 36 36 H 1.08993 * 109.47418 * 300.00445 * 5 3 2 37 37 H 0.96999 * 120.00159 * 334.99660 * 8 6 3 38 38 H 1.08003 * 125.99196 * 359.97438 * 12 11 9 39 39 H 1.08999 * 109.47535 * 29.99273 * 15 14 13 40 40 H 1.09003 * 109.47645 * 150.00065 * 15 14 13 41 41 H 0.96997 * 120.00253 * 179.97438 * 19 18 16 42 42 H 1.09002 * 109.47680 * 270.00838 * 25 24 14 43 43 H 1.08998 * 109.47383 * 30.00725 * 25 24 14 44 44 H 1.09004 * 109.47052 * 150.00718 * 25 24 14 45 45 H 0.96701 * 117.00256 * 179.72900 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9855 -0.8333 5 6 1.6529 2.1203 1.3159 6 6 3.5630 1.4449 -0.1462 7 1 3.8407 0.9265 -1.0640 8 7 4.1649 0.7620 1.0017 9 6 5.3822 0.1954 0.8863 10 8 5.9809 0.2506 -0.1708 11 6 5.9882 -0.4913 2.0416 12 6 5.4194 -0.6306 3.3274 13 7 6.2575 -1.3010 4.0691 14 7 7.3899 -1.6099 3.3073 15 6 8.5629 -2.3501 3.7788 16 6 9.5712 -1.3847 4.3468 17 1 9.3592 -0.3258 4.3560 18 6 10.7638 -1.8536 4.8555 19 7 11.0217 -3.1431 4.8448 20 14 12.0132 -0.6570 5.5602 21 1 11.7549 -0.4685 7.0103 22 1 13.3819 -1.2001 5.3678 23 1 11.8962 0.6488 4.8628 24 6 7.2201 -1.1136 2.0714 25 6 8.1954 -1.2164 0.9272 26 6 4.0599 2.8665 -0.2022 27 8 4.4813 3.3990 0.7972 28 8 4.0295 3.5429 -1.3611 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8932 -0.5139 0.8901 34 1 2.0988 1.5772 2.1493 35 1 2.0166 3.1478 1.3162 36 1 0.5679 2.1185 1.4201 37 1 3.6872 0.7177 1.8448 38 1 4.4583 -0.2505 3.6409 39 1 8.2603 -3.0562 4.5520 40 1 9.0091 -2.8930 2.9455 41 1 11.8609 -3.4728 5.2024 42 1 8.8685 -0.3592 0.9453 43 1 8.7741 -2.1349 1.0244 44 1 7.6489 -1.2294 -0.0159 45 1 4.3551 4.4534 -1.3468 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594912858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:30:28 Heat of formation + Delta-G solvation = -76.621903 kcal Electronic energy + Delta-G solvation = -27836.392841 eV Core-core repulsion = 23854.842672 eV Total energy + Delta-G solvation = -3981.550169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.06660 -40.55685 -38.82532 -37.20591 -36.15447 -34.00241 -33.62091 -32.08586 -31.24203 -30.35672 -28.27455 -27.04781 -26.53638 -24.74552 -23.52884 -22.46430 -21.51580 -20.35054 -19.80906 -19.04323 -18.20424 -17.38437 -16.90703 -16.72785 -16.06099 -15.71183 -15.25626 -14.93935 -14.72020 -14.53315 -14.30657 -13.97297 -13.90583 -13.71294 -13.22323 -13.16107 -12.60097 -12.44755 -12.43215 -12.35920 -12.10639 -11.86876 -11.80429 -11.62246 -11.48602 -11.40725 -11.14300 -11.11943 -10.93146 -10.88515 -10.64583 -10.37366 -10.21735 -9.93592 -9.53019 -9.21816 -8.70951 -8.59882 -7.94785 -6.33631 -4.41362 2.03655 2.13213 2.64453 2.83322 3.17647 3.19140 3.25324 3.30871 3.50820 3.89525 4.24201 4.24930 4.46546 4.49110 4.92649 4.98276 5.02883 5.07142 5.12777 5.18009 5.21466 5.28248 5.35242 5.54713 5.56406 5.63684 5.68487 5.73859 5.75243 5.90047 5.98811 6.02696 6.11450 6.30146 6.36761 6.45169 6.55345 6.78363 6.89957 7.14069 7.55424 7.57867 7.76560 7.77736 7.78039 8.35255 8.47820 8.64346 9.25692 10.74611 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018959 B = 0.002947 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1476.507422 B = 9499.213462 C =10047.645056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.091 4.091 4 H 0.095 0.905 5 C -0.158 4.158 6 C 0.166 3.834 7 H 0.123 0.877 8 N -0.712 5.712 9 C 0.609 3.391 10 O -0.552 6.552 11 C -0.332 4.332 12 C 0.060 3.940 13 N -0.294 5.294 14 N -0.313 5.313 15 C 0.251 3.749 16 C -0.540 4.540 17 H 0.065 0.935 18 C 0.068 3.932 19 N -0.890 5.890 20 Si 0.908 3.092 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.271 1.271 24 C 0.168 3.832 25 C -0.093 4.093 26 C 0.467 3.533 27 O -0.502 6.502 28 O -0.517 6.517 29 H 0.057 0.943 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.068 0.932 37 H 0.405 0.595 38 H 0.175 0.825 39 H 0.057 0.943 40 H 0.057 0.943 41 H 0.269 0.731 42 H 0.083 0.917 43 H 0.073 0.927 44 H 0.093 0.907 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.603 7.789 -11.714 24.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.155 4.155 3 C -0.110 4.110 4 H 0.113 0.887 5 C -0.215 4.215 6 C 0.058 3.942 7 H 0.141 0.859 8 N -0.367 5.367 9 C 0.400 3.600 10 O -0.431 6.431 11 C -0.347 4.347 12 C -0.127 4.127 13 N -0.114 5.114 14 N -0.090 5.090 15 C 0.134 3.866 16 C -0.579 4.579 17 H 0.084 0.916 18 C -0.136 4.136 19 N -0.527 5.527 20 Si 0.734 3.266 21 H -0.202 1.202 22 H -0.208 1.208 23 H -0.196 1.196 24 C 0.031 3.969 25 C -0.151 4.151 26 C 0.306 3.694 27 O -0.388 6.388 28 O -0.328 6.328 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.087 0.913 37 H 0.242 0.758 38 H 0.192 0.808 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.079 0.921 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.112 0.888 45 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -18.694 6.809 -10.869 22.671 hybrid contribution 0.662 1.667 0.268 1.813 sum -18.033 8.476 -10.601 22.570 Atomic orbital electron populations 1.21816 0.95312 1.01956 1.01949 1.21560 0.96127 0.94549 1.03311 1.21430 0.90630 0.98699 1.00283 0.88727 1.21989 1.02256 1.00831 0.96463 1.20364 0.93711 0.86557 0.93566 0.85891 1.45566 1.20023 1.56739 1.14343 1.17395 0.79367 0.76248 0.86975 1.90706 1.61753 1.61167 1.29488 1.19536 0.99361 1.19853 0.95982 1.23706 0.99230 0.98521 0.91254 1.77150 0.94987 1.19590 1.19644 1.49376 1.14701 1.38720 1.06157 1.19865 0.77975 0.91707 0.97062 1.21257 1.01030 0.93831 1.41754 0.91647 1.24914 0.97952 0.95607 0.95136 1.69908 1.25221 1.12534 1.45068 0.86324 0.79857 0.80821 0.79550 1.20231 1.20769 1.19580 1.21469 0.94461 0.92619 0.88395 1.20578 0.96896 1.03348 0.94320 1.24192 0.74928 0.89787 0.80464 1.90734 1.42513 1.69414 1.36177 1.84526 1.78904 1.31963 1.37441 0.92365 0.92688 0.92458 0.91218 0.91053 0.92000 0.92265 0.91259 0.75779 0.80813 0.92464 0.92513 0.92103 0.89820 0.90777 0.88811 0.73375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.68 37.15 0.36 -0.48 16 2 C -0.12 -0.79 5.18 -26.73 -0.14 -0.92 16 3 C -0.09 -0.66 2.20 -90.62 -0.20 -0.86 16 4 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 5 C -0.16 -1.14 8.53 37.16 0.32 -0.82 16 6 C 0.17 1.76 2.20 -69.08 -0.15 1.60 16 7 H 0.12 1.35 7.58 -51.93 -0.39 0.96 16 8 N -0.71 -8.84 4.03 -56.01 -0.23 -9.06 16 9 C 0.61 10.12 7.77 -12.52 -0.10 10.02 16 10 O -0.55 -10.37 14.50 5.27 0.08 -10.30 16 11 C -0.33 -6.12 6.13 -105.07 -0.64 -6.77 16 12 C 0.06 1.05 11.50 -16.98 -0.20 0.86 16 13 N -0.29 -6.34 12.50 30.86 0.39 -5.96 16 14 N -0.31 -7.11 3.56 -57.77 -0.21 -7.31 16 15 C 0.25 6.27 5.97 -5.19 -0.03 6.24 16 16 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 17 H 0.07 1.84 7.81 -52.49 -0.41 1.43 16 18 C 0.07 1.83 5.46 -17.82 -0.10 1.73 16 19 N -0.89 -24.69 13.29 55.43 0.74 -23.95 16 20 Si 0.91 21.04 29.54 -169.99 -5.02 16.02 16 21 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 24 C 0.17 3.45 7.01 -81.60 -0.57 2.88 16 25 C -0.09 -1.70 9.57 36.00 0.34 -1.36 16 26 C 0.47 5.67 6.54 36.00 0.24 5.91 16 27 O -0.50 -7.73 16.88 -18.75 -0.32 -8.05 16 28 O -0.52 -4.87 13.42 -39.24 -0.53 -5.40 16 29 H 0.06 0.30 6.59 -51.93 -0.34 -0.04 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.51 7.79 -51.92 -0.40 0.11 16 34 H 0.06 0.45 6.40 -51.93 -0.33 0.12 16 35 H 0.06 0.51 6.96 -51.93 -0.36 0.15 16 36 H 0.07 0.39 6.59 -51.93 -0.34 0.05 16 37 H 0.41 4.27 5.63 -40.82 -0.23 4.04 16 38 H 0.17 2.21 7.50 -52.48 -0.39 1.81 16 39 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 40 H 0.06 1.40 7.02 -51.93 -0.36 1.04 16 41 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 43 H 0.07 1.30 7.05 -51.93 -0.37 0.94 16 44 H 0.09 1.61 6.50 -51.93 -0.34 1.27 16 45 H 0.41 2.26 9.10 45.56 0.41 2.67 16 LS Contribution 375.86 15.07 5.66 5.66 Total: -1.00 -33.62 375.86 -6.16 -39.78 By element: Atomic # 1 Polarization: 11.09 SS G_CDS: -5.53 Total: 5.55 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -1.19 Total: 3.01 kcal Atomic # 7 Polarization: -46.98 SS G_CDS: 0.69 Total: -46.29 kcal Atomic # 8 Polarization: -22.97 SS G_CDS: -0.77 Total: -23.74 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.62 -6.16 -39.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594912858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.842 kcal (2) G-P(sol) polarization free energy of solvation -33.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds