Wall clock time and date at job start Tue Mar 31 2020 13:32:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53003 * 109.46570 * 2 1 4 4 H 1.08996 * 109.47615 * 305.00111 * 3 2 1 5 5 C 1.53001 * 109.47212 * 65.00719 * 3 2 1 6 6 N 1.46499 * 109.46920 * 184.99846 * 3 2 1 7 7 N 1.28473 * 124.88315 * 300.31795 * 6 3 2 8 8 C 1.31859 * 110.06418 * 180.17903 * 7 6 3 9 9 C 1.47601 * 126.52646 * 179.82289 * 8 7 6 10 10 O 1.21609 * 120.00407 * 184.92032 * 9 8 7 11 11 N 1.34773 * 120.00021 * 4.91286 * 9 8 7 12 12 C 1.36921 * 120.00147 * 355.52959 * 11 9 8 13 13 H 1.07994 * 119.99528 * 40.71250 * 12 11 9 14 14 C 1.39014 * 120.00001 * 220.44234 * 12 11 9 15 15 N 1.31383 * 119.99564 * 211.56576 * 14 12 11 16 16 Si 1.86799 * 120.00294 * 31.56544 * 14 12 11 17 17 H 1.48500 * 109.47017 * 86.84670 * 16 14 12 18 18 H 1.48505 * 109.47142 * 206.84549 * 16 14 12 19 19 H 1.48503 * 109.47093 * 326.84964 * 16 14 12 20 20 C 1.46503 * 120.00408 * 175.52615 * 11 9 8 21 21 C 1.53001 * 109.46989 * 276.30478 * 20 11 9 22 22 C 1.50704 * 109.47002 * 184.29173 * 21 20 11 23 23 O 1.20826 * 119.99901 * 359.97438 * 22 21 20 24 24 O 1.34229 * 120.00066 * 179.97438 * 22 21 20 25 25 C 1.41554 * 106.94987 * 359.55738 * 8 7 6 26 26 C 1.35058 * 124.87905 * 120.00053 * 6 3 2 27 27 C 1.50694 * 126.37614 * 359.97438 * 26 6 3 28 28 H 1.08999 * 109.46923 * 299.99368 * 1 2 3 29 29 H 1.08996 * 109.47143 * 59.99684 * 1 2 3 30 30 H 1.09002 * 109.46883 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47193 * 240.00224 * 2 1 3 32 32 H 1.08994 * 109.47470 * 119.99615 * 2 1 3 33 33 H 1.08996 * 109.47327 * 59.99216 * 5 3 2 34 34 H 1.08995 * 109.47284 * 180.02562 * 5 3 2 35 35 H 1.09008 * 109.46482 * 299.99261 * 5 3 2 36 36 H 0.97004 * 119.99433 * 180.02562 * 15 14 12 37 37 H 1.09000 * 109.46679 * 36.30154 * 20 11 9 38 38 H 1.09001 * 109.47214 * 156.30001 * 20 11 9 39 39 H 1.09006 * 109.46765 * 304.28798 * 21 20 11 40 40 H 1.08994 * 109.47424 * 64.28889 * 21 20 11 41 41 H 0.96690 * 117.00018 * 179.97438 * 24 22 21 42 42 H 1.08004 * 127.24319 * 180.26311 * 25 8 7 43 43 H 1.09003 * 109.47656 * 270.00061 * 27 26 6 44 44 H 1.08997 * 109.47357 * 30.00580 * 27 26 6 45 45 H 1.09005 * 109.46976 * 150.00122 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6352 2.1265 1.3074 6 7 3.5000 1.4444 -0.1203 7 7 4.3063 0.8871 0.7101 8 6 5.5532 1.0707 0.3224 9 6 6.7670 0.5880 1.0097 10 8 7.8662 0.9017 0.5946 11 7 6.6572 -0.2002 2.0973 12 6 5.4223 -0.4786 2.6192 13 1 4.5915 -0.6836 1.9605 14 6 5.2395 -0.5028 3.9971 15 7 4.3511 -1.3124 4.5276 16 14 6.2567 0.6157 5.0942 17 1 5.5877 1.9362 5.2110 18 1 6.3845 0.0045 6.4416 19 1 7.6067 0.7954 4.5020 20 6 7.8590 -0.7594 2.7212 21 6 8.2698 -2.0355 1.9839 22 6 9.4422 -2.6677 2.6889 23 8 9.9023 -2.1503 3.6791 24 8 9.9753 -3.8055 2.2167 25 6 5.5059 1.8133 -0.8817 26 6 4.1915 2.0270 -1.1236 27 6 3.6081 2.7750 -2.2945 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5137 0.8899 33 1 2.0699 1.5875 2.1492 34 1 1.9981 3.1543 1.3072 35 1 0.5488 2.1252 1.3970 36 1 4.2232 -1.3290 5.4891 37 1 8.6687 -0.0316 2.6667 38 1 7.6509 -0.9938 3.7652 39 1 7.4329 -2.7339 1.9726 40 1 8.5512 -1.7891 0.9602 41 1 10.7262 -4.1731 2.7024 42 1 6.3425 2.1405 -1.4812 43 1 3.4246 2.0806 -3.1144 44 1 2.6692 3.2415 -1.9963 45 1 4.3087 3.5442 -2.6197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604974542.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:32:10 Heat of formation + Delta-G solvation = -64.241871 kcal Electronic energy + Delta-G solvation = -28533.886551 eV Core-core repulsion = 24552.873221 eV Total energy + Delta-G solvation = -3981.013330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.45518 -41.40071 -40.33432 -37.39864 -37.20959 -36.83462 -34.18937 -33.64183 -32.73255 -32.09485 -29.89249 -27.79444 -26.98622 -26.83323 -25.44774 -23.78033 -22.19390 -21.82626 -21.31686 -20.17577 -19.35083 -18.71146 -17.88010 -17.59868 -17.49063 -16.96865 -16.80890 -16.40580 -16.09183 -15.83930 -15.59755 -14.94652 -14.75977 -14.57489 -14.45873 -14.24115 -13.96837 -13.86055 -13.75659 -13.62173 -13.44865 -13.14398 -13.01964 -12.87035 -12.73517 -12.66593 -12.59421 -12.43667 -12.13687 -11.87633 -11.82051 -11.72664 -11.67062 -11.21654 -11.11356 -10.65019 -9.88952 -9.65086 -9.61531 -8.52307 -5.99191 0.85218 1.13517 1.21671 1.28928 1.34326 1.39357 1.73447 1.95447 2.21972 2.52575 2.78318 3.02237 3.51292 3.83254 3.84214 3.88699 3.91664 3.99564 4.10309 4.26671 4.36963 4.42619 4.48175 4.56097 4.62765 4.63818 4.71550 4.80985 4.84311 4.87853 4.90185 4.95730 5.09879 5.13512 5.18050 5.20552 5.36560 5.40169 5.43942 5.54183 5.63752 6.11301 6.19385 6.52442 6.95946 6.96750 7.26942 7.51414 7.75060 8.60304 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012919 B = 0.004485 C = 0.003938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.879902 B = 6241.495351 C = 7108.871849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.128 4.128 3 C 0.144 3.856 4 H 0.145 0.855 5 C -0.160 4.160 6 N -0.287 5.287 7 N -0.237 5.237 8 C -0.033 4.033 9 C 0.548 3.452 10 O -0.612 6.612 11 N -0.455 5.455 12 C -0.327 4.327 13 H 0.113 0.887 14 C 0.054 3.946 15 N -0.870 5.870 16 Si 0.878 3.122 17 H -0.283 1.283 18 H -0.276 1.276 19 H -0.259 1.259 20 C 0.128 3.872 21 C -0.119 4.119 22 C 0.499 3.501 23 O -0.551 6.551 24 O -0.504 6.504 25 C -0.215 4.215 26 C 0.010 3.990 27 C -0.076 4.076 28 H 0.065 0.935 29 H 0.082 0.918 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.037 0.963 34 H 0.059 0.941 35 H 0.109 0.891 36 H 0.277 0.723 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.429 0.571 42 H 0.157 0.843 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.247 2.757 -11.928 14.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.045 3.955 4 H 0.162 0.838 5 C -0.217 4.217 6 N -0.077 5.077 7 N -0.072 5.072 8 C -0.192 4.192 9 C 0.339 3.661 10 O -0.498 6.498 11 N -0.174 5.174 12 C -0.455 4.455 13 H 0.130 0.870 14 C -0.152 4.152 15 N -0.506 5.506 16 Si 0.703 3.297 17 H -0.210 1.210 18 H -0.202 1.202 19 H -0.184 1.184 20 C 0.004 3.996 21 C -0.158 4.158 22 C 0.343 3.657 23 O -0.442 6.442 24 O -0.318 6.318 25 C -0.243 4.243 26 C -0.114 4.114 27 C -0.134 4.134 28 H 0.084 0.916 29 H 0.101 0.899 30 H 0.080 0.920 31 H 0.080 0.920 32 H 0.062 0.938 33 H 0.056 0.944 34 H 0.078 0.922 35 H 0.127 0.873 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.135 0.865 40 H 0.131 0.869 41 H 0.291 0.709 42 H 0.175 0.825 43 H 0.111 0.889 44 H 0.108 0.892 45 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.792 2.607 -11.026 13.751 hybrid contribution 1.745 0.430 1.114 2.115 sum -6.046 3.037 -9.912 12.001 Atomic orbital electron populations 1.21751 0.91719 1.03000 1.03407 1.21789 0.98639 0.94236 1.02022 1.21952 0.72523 0.99152 1.01851 0.83789 1.22159 1.03798 1.00066 0.95708 1.46448 1.08214 1.37100 1.15943 1.74269 1.00572 1.15868 1.16484 1.21768 0.91379 1.07233 0.98786 1.17645 0.86861 0.78787 0.82814 1.90592 1.27648 1.61838 1.69695 1.43663 1.06600 1.41275 1.25905 1.19270 0.87190 1.47758 0.91283 0.86955 1.25561 0.96536 0.95588 0.97493 1.69908 1.36069 1.31533 1.13049 0.86962 0.81269 0.81653 0.79852 1.20956 1.20156 1.18374 1.21356 0.88140 0.93760 0.96335 1.21588 0.95128 0.97801 1.01255 1.23186 0.82921 0.78074 0.81513 1.90696 1.62331 1.63703 1.27436 1.84498 1.50438 1.38365 1.58468 1.21603 0.97118 1.06974 0.98643 1.21996 0.91187 1.02793 0.95472 1.20480 1.01897 0.99313 0.91698 0.91624 0.89914 0.92024 0.91954 0.93756 0.94360 0.92207 0.87262 0.91305 0.92046 0.91368 0.86460 0.86913 0.70930 0.82520 0.88908 0.89178 0.88750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.67 71.98 0.70 -1.64 16 2 C -0.13 -3.19 5.57 30.60 0.17 -3.02 16 3 C 0.14 3.46 3.02 44.99 0.14 3.59 16 4 H 0.14 2.14 6.55 -2.39 -0.02 2.12 16 5 C -0.16 -3.98 9.13 71.98 0.66 -3.33 16 6 N -0.29 -9.56 3.04 -314.20 -0.96 -10.52 16 7 N -0.24 -10.45 8.38 -48.20 -0.40 -10.85 16 8 C -0.03 -1.53 6.86 42.43 0.29 -1.24 16 9 C 0.55 28.12 7.59 86.72 0.66 28.77 16 10 O -0.61 -32.61 16.59 -4.06 -0.07 -32.68 16 11 N -0.46 -23.34 2.10 -639.06 -1.34 -24.68 16 12 C -0.33 -17.73 8.34 84.09 0.70 -17.03 16 13 H 0.11 6.47 5.98 -2.91 -0.02 6.46 16 14 C 0.05 2.97 5.01 84.95 0.43 3.40 16 15 N -0.87 -48.52 13.96 21.67 0.30 -48.22 16 16 Si 0.88 44.10 26.56 68.60 1.82 45.92 16 17 H -0.28 -14.34 7.11 99.48 0.71 -13.63 16 18 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 19 H -0.26 -13.24 5.66 99.48 0.56 -12.68 16 20 C 0.13 6.07 2.85 86.38 0.25 6.32 16 21 C -0.12 -4.64 6.09 29.85 0.18 -4.46 16 22 C 0.50 17.55 8.33 71.24 0.59 18.14 16 23 O -0.55 -22.67 16.69 21.96 0.37 -22.31 16 24 O -0.50 -13.01 13.42 -51.41 -0.69 -13.70 16 25 C -0.22 -8.07 10.73 22.42 0.24 -7.83 16 26 C 0.01 0.28 6.92 41.39 0.29 0.57 16 27 C -0.08 -1.23 9.92 71.23 0.71 -0.53 16 28 H 0.06 1.04 6.56 -2.39 -0.02 1.02 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 35 H 0.11 1.91 6.57 -2.38 -0.02 1.89 16 36 H 0.28 14.55 8.31 -92.71 -0.77 13.78 16 37 H 0.06 3.04 7.52 -2.39 -0.02 3.02 16 38 H 0.07 3.39 4.69 -2.39 -0.01 3.38 16 39 H 0.12 4.50 8.14 -2.38 -0.02 4.48 16 40 H 0.11 4.23 8.14 -2.39 -0.02 4.21 16 41 H 0.43 6.59 9.10 -74.06 -0.67 5.92 16 42 H 0.16 5.44 8.06 -2.91 -0.02 5.42 16 43 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.09 1.03 7.02 -2.39 -0.02 1.01 16 45 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -76.71 372.41 5.23 -71.48 By element: Atomic # 1 Polarization: 23.62 SS G_CDS: 0.20 Total: 23.82 kcal Atomic # 6 Polarization: 15.73 SS G_CDS: 5.99 Total: 21.72 kcal Atomic # 7 Polarization: -91.87 SS G_CDS: -2.40 Total: -94.27 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -0.39 Total: -68.68 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 1.82 Total: 45.92 kcal Total: -76.71 5.23 -71.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604974542.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.238 kcal (2) G-P(sol) polarization free energy of solvation -76.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds