Wall clock time and date at job start Tue Mar 31 2020 14:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47436 * 2 1 4 4 C 1.34776 * 120.00329 * 272.48970 * 3 2 1 5 5 O 1.21602 * 120.00198 * 185.01282 * 4 3 2 6 6 C 1.47434 * 120.00084 * 5.00875 * 4 3 2 7 7 C 1.41292 * 126.40834 * 6.19343 * 6 4 3 8 8 N 1.30456 * 108.01883 * 179.71929 * 7 6 4 9 9 N 1.39942 * 108.89662 * 0.40930 * 8 7 6 10 10 C 1.46493 * 125.75495 * 179.84653 * 9 8 7 11 11 C 1.50695 * 109.47341 * 269.68972 * 10 9 8 12 12 H 1.08004 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00164 * 179.72303 * 11 10 9 14 14 N 1.31509 * 119.99907 * 0.27523 * 13 11 10 15 15 Si 1.86800 * 120.00097 * 180.27806 * 13 11 10 16 16 H 1.48505 * 109.47363 * 59.99990 * 15 13 11 17 17 H 1.48506 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47219 * 300.00043 * 15 13 11 19 19 C 1.34264 * 108.48645 * 359.58404 * 9 8 7 20 20 C 1.50705 * 126.28425 * 180.22120 * 19 9 8 21 21 C 1.46500 * 119.99912 * 92.48302 * 3 2 1 22 22 C 1.53001 * 109.46897 * 119.61548 * 21 3 2 23 23 C 1.53000 * 109.47275 * 239.61516 * 21 3 2 24 24 C 1.50699 * 109.47078 * 359.61387 * 21 3 2 25 25 O 1.20827 * 120.00020 * 137.70045 * 24 21 3 26 26 O 1.34224 * 120.00169 * 317.70478 * 24 21 3 27 27 H 1.09005 * 109.47113 * 299.99874 * 1 2 3 28 28 H 1.09002 * 109.47331 * 59.99301 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46713 * 240.00484 * 2 1 3 31 31 H 1.08993 * 109.47122 * 120.00691 * 2 1 3 32 32 H 1.07996 * 125.99215 * 359.95705 * 7 6 4 33 33 H 1.08997 * 109.46863 * 149.68823 * 10 9 8 34 34 H 1.09002 * 109.47067 * 29.69327 * 10 9 8 35 35 H 0.97007 * 120.00252 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.46901 * 90.02885 * 20 19 9 37 37 H 1.09000 * 109.46932 * 210.02064 * 20 19 9 38 38 H 1.08994 * 109.47451 * 330.02427 * 20 19 9 39 39 H 1.08997 * 109.47262 * 59.99882 * 22 21 3 40 40 H 1.09000 * 109.46807 * 180.02562 * 22 21 3 41 41 H 1.09002 * 109.47114 * 299.99597 * 22 21 3 42 42 H 1.08998 * 109.47051 * 59.99871 * 23 21 3 43 43 H 1.09004 * 109.47170 * 180.02562 * 23 21 3 44 44 H 1.09004 * 109.46967 * 299.99739 * 23 21 3 45 45 H 0.96701 * 117.00051 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1953 2.0334 -1.1661 5 8 2.6861 3.1460 -1.1720 6 6 1.7938 1.3981 -2.4344 7 6 1.1045 0.1730 -2.5774 8 7 0.9289 -0.0449 -3.8516 9 7 1.4973 1.0100 -4.5744 10 6 1.5133 1.1370 -6.0337 11 6 2.7588 0.4887 -6.5808 12 1 3.4675 0.0277 -5.9086 13 6 2.9907 0.4786 -7.9398 14 7 2.1276 1.0394 -8.7583 15 14 4.5308 -0.3319 -8.6186 16 1 4.5412 -1.7684 -8.2422 17 1 4.5440 -0.2084 -10.0984 18 1 5.7312 0.3362 -8.0549 19 6 2.0204 1.8888 -3.7045 20 6 2.7259 3.1746 -4.0513 21 6 2.3144 2.0534 1.2675 22 6 3.7900 2.4569 1.2983 23 6 1.4412 3.3029 1.3983 24 6 2.0257 1.1168 2.4123 25 8 2.7903 1.0496 3.3455 26 8 0.9193 0.3571 2.3952 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.7768 -0.4685 -1.7728 33 1 1.5030 2.1922 -6.3066 34 1 0.6345 0.6453 -6.4508 35 1 2.2905 1.0320 -9.7146 36 1 1.9993 3.9857 -4.1012 37 1 3.4689 3.3992 -3.2860 38 1 3.2196 3.0691 -5.0173 39 1 3.9988 3.1343 0.4704 40 1 4.0103 2.9566 2.2416 41 1 4.4121 1.5667 1.2053 42 1 0.3900 3.0154 1.3763 43 1 1.6618 3.8033 2.3412 44 1 1.6500 3.9804 0.5703 45 1 0.7770 -0.2284 3.1515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605403880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:30 Heat of formation + Delta-G solvation = -23.030200 kcal Electronic energy + Delta-G solvation = -28903.852243 eV Core-core repulsion = 24924.625985 eV Total energy + Delta-G solvation = -3979.226258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.51058 -40.69359 -39.08518 -36.72936 -36.13948 -34.42483 -33.45734 -31.97591 -30.95733 -29.89160 -27.50753 -27.40528 -26.58936 -25.26129 -23.52462 -23.16638 -21.97124 -20.82224 -19.61141 -18.51668 -18.17555 -17.41612 -16.85383 -16.46998 -16.31524 -15.39945 -15.05253 -14.94907 -14.84596 -14.35937 -14.11256 -13.85388 -13.56007 -13.24423 -12.89019 -12.67617 -12.56093 -12.49607 -12.36261 -12.20878 -12.08023 -11.97407 -11.87510 -11.64796 -11.53375 -11.41723 -11.38398 -11.12507 -10.89869 -10.79281 -10.75209 -10.36734 -10.14498 -9.93195 -9.27463 -8.76396 -8.71868 -8.53830 -7.91848 -6.34582 -4.42799 1.73964 2.13730 2.63148 2.77916 2.93129 3.19157 3.23394 3.25734 3.40104 3.80744 4.23292 4.43313 4.67612 4.83690 4.95635 4.99373 5.11523 5.18889 5.27139 5.35145 5.44261 5.47491 5.53053 5.60027 5.69538 5.74698 5.78889 5.84245 5.94574 6.03890 6.08548 6.10038 6.23487 6.36443 6.46825 6.52888 6.59289 6.78722 6.89193 7.15490 7.49757 7.53157 7.54960 7.76273 7.78373 8.36690 8.50013 8.62887 9.24300 10.73480 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.003203 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.984621 B = 8739.206045 C = 9011.371060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 N -0.608 5.608 4 C 0.613 3.387 5 O -0.548 6.548 6 C -0.331 4.331 7 C 0.030 3.970 8 N -0.297 5.297 9 N -0.314 5.314 10 C 0.251 3.749 11 C -0.542 4.542 12 H 0.065 0.935 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.908 3.092 16 H -0.274 1.274 17 H -0.283 1.283 18 H -0.273 1.273 19 C 0.167 3.833 20 C -0.096 4.096 21 C 0.195 3.805 22 C -0.156 4.156 23 C -0.162 4.162 24 C 0.485 3.515 25 O -0.505 6.505 26 O -0.500 6.500 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.096 0.904 31 H 0.076 0.924 32 H 0.204 0.796 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.270 0.730 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.100 0.900 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.098 0.902 45 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.953 0.975 19.885 20.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.032 4.032 3 N -0.344 5.344 4 C 0.406 3.594 5 O -0.427 6.427 6 C -0.346 4.346 7 C -0.156 4.156 8 N -0.117 5.117 9 N -0.091 5.091 10 C 0.134 3.866 11 C -0.580 4.580 12 H 0.083 0.917 13 C -0.136 4.136 14 N -0.527 5.527 15 Si 0.735 3.265 16 H -0.199 1.199 17 H -0.209 1.209 18 H -0.198 1.198 19 C 0.029 3.971 20 C -0.154 4.154 21 C 0.109 3.891 22 C -0.214 4.214 23 C -0.220 4.220 24 C 0.326 3.674 25 O -0.391 6.391 26 O -0.312 6.312 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.114 0.886 31 H 0.095 0.905 32 H 0.219 0.781 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.080 0.920 36 H 0.096 0.904 37 H 0.112 0.888 38 H 0.101 0.899 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.079 0.921 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -2.963 1.019 18.532 18.795 hybrid contribution 0.874 -0.577 0.701 1.260 sum -2.089 0.443 19.233 19.351 Atomic orbital electron populations 1.22506 0.95273 1.02548 1.03570 1.22272 0.95383 0.82126 1.03456 1.47760 1.68152 1.14451 1.04052 1.17244 0.76195 0.84112 0.81853 1.90628 1.45450 1.19919 1.86729 1.19567 1.21025 1.01942 0.92074 1.25102 0.98966 0.96321 0.95205 1.77192 1.20124 1.10109 1.04280 1.49408 1.37588 1.13118 1.08938 1.19836 0.99873 0.99279 0.67613 1.21214 1.05719 1.38614 0.92441 0.91711 1.24918 0.97368 0.94957 0.96353 1.69903 1.35600 1.43113 1.04048 0.86386 0.82395 0.80029 0.77740 1.19906 1.20870 1.19834 1.21454 0.93550 0.93294 0.88760 1.20588 1.00194 0.90836 1.03773 1.20249 0.98112 0.90771 0.79947 1.22213 0.91387 1.03262 1.04506 1.22241 0.99141 0.96298 1.04332 1.23456 0.78093 0.78385 0.87457 1.90736 1.47845 1.64436 1.36067 1.84960 1.43593 1.53103 1.49503 0.90259 0.91437 0.91557 0.88604 0.90547 0.78055 0.92623 0.92525 0.92042 0.90441 0.88833 0.89946 0.88143 0.90983 0.92117 0.91479 0.91361 0.88325 0.73825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.05 37.16 0.30 -1.37 16 2 C 0.09 0.95 4.79 -4.04 -0.02 0.93 16 3 N -0.61 -7.67 2.43 -161.35 -0.39 -8.07 16 4 C 0.61 9.72 7.06 -12.52 -0.09 9.63 16 5 O -0.55 -9.35 11.16 5.28 0.06 -9.29 16 6 C -0.33 -5.89 5.95 -105.07 -0.63 -6.52 16 7 C 0.03 0.51 8.43 -16.98 -0.14 0.37 16 8 N -0.30 -6.27 12.50 30.86 0.39 -5.89 16 9 N -0.31 -6.96 3.56 -57.78 -0.21 -7.17 16 10 C 0.25 6.17 5.78 -5.20 -0.03 6.14 16 11 C -0.54 -14.40 9.39 -34.44 -0.32 -14.72 16 12 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 13 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 14 N -0.89 -24.36 13.29 55.43 0.74 -23.63 16 15 Si 0.91 20.60 29.54 -169.99 -5.02 15.58 16 16 H -0.27 -6.23 7.11 56.52 0.40 -5.82 16 17 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 18 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 19 C 0.17 3.31 7.00 -81.60 -0.57 2.74 16 20 C -0.10 -1.67 9.28 36.01 0.33 -1.34 16 21 C 0.20 2.23 0.99 -132.97 -0.13 2.10 16 22 C -0.16 -1.86 7.85 37.16 0.29 -1.57 16 23 C -0.16 -1.71 8.38 37.16 0.31 -1.40 16 24 C 0.48 4.95 6.02 36.01 0.22 5.17 16 25 O -0.50 -6.34 16.77 -18.75 -0.31 -6.66 16 26 O -0.50 -3.44 7.79 -39.24 -0.31 -3.74 16 27 H 0.08 0.69 5.96 -51.93 -0.31 0.38 16 28 H 0.07 0.76 6.17 -51.93 -0.32 0.44 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.11 4.81 -51.93 -0.25 0.86 16 31 H 0.08 0.69 5.56 -51.93 -0.29 0.40 16 32 H 0.20 2.68 3.22 -52.49 -0.17 2.51 16 33 H 0.06 1.36 7.62 -51.93 -0.40 0.96 16 34 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 35 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.09 1.58 6.65 -51.93 -0.35 1.23 16 38 H 0.08 1.51 7.70 -51.93 -0.40 1.11 16 39 H 0.10 1.34 6.03 -51.93 -0.31 1.03 16 40 H 0.07 0.78 7.92 -51.93 -0.41 0.37 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.10 1.22 6.31 -51.93 -0.33 0.89 16 45 H 0.40 1.09 9.10 45.56 0.41 1.50 16 LS Contribution 354.81 15.07 5.35 5.35 Total: -1.00 -31.22 354.81 -5.48 -36.70 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.20 Total: 4.97 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.58 Total: 1.85 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.52 Total: -44.75 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.56 Total: -19.69 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.22 -5.48 -36.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605403880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.669 kcal (2) G-P(sol) polarization free energy of solvation -31.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.546 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds