Wall clock time and date at job start Tue Mar 31 2020 14:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46494 * 109.47436 * 2 1 4 4 C 1.34776 * 120.00329 * 272.48970 * 3 2 1 5 5 O 1.21602 * 120.00198 * 185.01282 * 4 3 2 6 6 C 1.47434 * 120.00084 * 5.00875 * 4 3 2 7 7 C 1.41292 * 126.40834 * 6.19343 * 6 4 3 8 8 N 1.30456 * 108.01883 * 179.71929 * 7 6 4 9 9 N 1.39942 * 108.89662 * 0.40930 * 8 7 6 10 10 C 1.46493 * 125.75495 * 179.84653 * 9 8 7 11 11 C 1.50695 * 109.47341 * 269.68972 * 10 9 8 12 12 H 1.08004 * 120.00188 * 0.02562 * 11 10 9 13 13 C 1.37875 * 120.00164 * 179.72303 * 11 10 9 14 14 N 1.31509 * 119.99907 * 0.27523 * 13 11 10 15 15 Si 1.86800 * 120.00097 * 180.27806 * 13 11 10 16 16 H 1.48505 * 109.47363 * 59.99990 * 15 13 11 17 17 H 1.48506 * 109.47186 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47219 * 300.00043 * 15 13 11 19 19 C 1.34264 * 108.48645 * 359.58404 * 9 8 7 20 20 C 1.50705 * 126.28425 * 180.22120 * 19 9 8 21 21 C 1.46500 * 119.99912 * 92.48302 * 3 2 1 22 22 C 1.53001 * 109.46897 * 119.61548 * 21 3 2 23 23 C 1.53000 * 109.47275 * 239.61516 * 21 3 2 24 24 C 1.50699 * 109.47078 * 359.61387 * 21 3 2 25 25 O 1.20827 * 120.00020 * 137.70045 * 24 21 3 26 26 O 1.34224 * 120.00169 * 317.70478 * 24 21 3 27 27 H 1.09005 * 109.47113 * 299.99874 * 1 2 3 28 28 H 1.09002 * 109.47331 * 59.99301 * 1 2 3 29 29 H 1.09000 * 109.47221 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46713 * 240.00484 * 2 1 3 31 31 H 1.08993 * 109.47122 * 120.00691 * 2 1 3 32 32 H 1.07996 * 125.99215 * 359.95705 * 7 6 4 33 33 H 1.08997 * 109.46863 * 149.68823 * 10 9 8 34 34 H 1.09002 * 109.47067 * 29.69327 * 10 9 8 35 35 H 0.97007 * 120.00252 * 180.02562 * 14 13 11 36 36 H 1.09006 * 109.46901 * 90.02885 * 20 19 9 37 37 H 1.09000 * 109.46932 * 210.02064 * 20 19 9 38 38 H 1.08994 * 109.47451 * 330.02427 * 20 19 9 39 39 H 1.08997 * 109.47262 * 59.99882 * 22 21 3 40 40 H 1.09000 * 109.46807 * 180.02562 * 22 21 3 41 41 H 1.09002 * 109.47114 * 299.99597 * 22 21 3 42 42 H 1.08998 * 109.47051 * 59.99871 * 23 21 3 43 43 H 1.09004 * 109.47170 * 180.02562 * 23 21 3 44 44 H 1.09004 * 109.46967 * 299.99739 * 23 21 3 45 45 H 0.96701 * 117.00051 * 179.97438 * 26 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.1953 2.0334 -1.1661 5 8 2.6861 3.1460 -1.1720 6 6 1.7938 1.3981 -2.4344 7 6 1.1045 0.1730 -2.5774 8 7 0.9289 -0.0449 -3.8516 9 7 1.4973 1.0100 -4.5744 10 6 1.5133 1.1370 -6.0337 11 6 2.7588 0.4887 -6.5808 12 1 3.4675 0.0277 -5.9086 13 6 2.9907 0.4786 -7.9398 14 7 2.1276 1.0394 -8.7583 15 14 4.5308 -0.3319 -8.6186 16 1 4.5412 -1.7684 -8.2422 17 1 4.5440 -0.2084 -10.0984 18 1 5.7312 0.3362 -8.0549 19 6 2.0204 1.8888 -3.7045 20 6 2.7259 3.1746 -4.0513 21 6 2.3144 2.0534 1.2675 22 6 3.7900 2.4569 1.2983 23 6 1.4412 3.3029 1.3983 24 6 2.0257 1.1168 2.4123 25 8 2.7903 1.0496 3.3455 26 8 0.9193 0.3571 2.3952 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 0.7768 -0.4685 -1.7728 33 1 1.5030 2.1922 -6.3066 34 1 0.6345 0.6453 -6.4508 35 1 2.2905 1.0320 -9.7146 36 1 1.9993 3.9857 -4.1012 37 1 3.4689 3.3992 -3.2860 38 1 3.2196 3.0691 -5.0173 39 1 3.9988 3.1343 0.4704 40 1 4.0103 2.9566 2.2416 41 1 4.4121 1.5667 1.2053 42 1 0.3900 3.0154 1.3763 43 1 1.6618 3.8033 2.3412 44 1 1.6500 3.9804 0.5703 45 1 0.7770 -0.2284 3.1515 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605403880.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:29 Heat of formation + Delta-G solvation = -43.335256 kcal Electronic energy + Delta-G solvation = -28904.732737 eV Core-core repulsion = 24924.625985 eV Total energy + Delta-G solvation = -3980.106751 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.66593 -41.86949 -40.21019 -37.54886 -37.14363 -35.94803 -34.88878 -33.56045 -32.53846 -30.85982 -29.16153 -28.37708 -28.09782 -26.23408 -25.29843 -24.06362 -23.23559 -22.07167 -20.74083 -19.79668 -19.09671 -18.83669 -18.34638 -17.74822 -17.32273 -16.69674 -16.55978 -16.24665 -15.99208 -15.73079 -15.46512 -14.90859 -14.63024 -14.39128 -14.23955 -14.08204 -13.90118 -13.67699 -13.64095 -13.39030 -13.21722 -13.15812 -13.00086 -12.92441 -12.78794 -12.70541 -12.49225 -12.43610 -12.29241 -12.27939 -11.91139 -11.69132 -11.60334 -11.56699 -10.75384 -10.53857 -10.20060 -9.80968 -9.40381 -8.37064 -6.53658 0.68476 0.91613 1.32681 1.39081 1.39670 1.48210 1.68564 1.89859 2.00700 2.33097 2.48787 2.95026 3.54094 3.74817 3.75960 3.81062 4.00937 4.08546 4.20862 4.25580 4.41836 4.45148 4.53673 4.61277 4.65271 4.68558 4.72501 4.78314 4.80996 4.90711 5.01287 5.03965 5.13069 5.17864 5.19918 5.23924 5.49539 5.49897 5.57767 5.66197 5.68927 5.75828 6.07092 6.35853 6.55559 6.85519 6.92178 7.17516 7.26342 8.70515 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.022833 B = 0.003203 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.984621 B = 8739.206045 C = 9011.371060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.083 3.917 3 N -0.599 5.599 4 C 0.612 3.388 5 O -0.562 6.562 6 C -0.329 4.329 7 C 0.052 3.948 8 N -0.337 5.337 9 N -0.338 5.338 10 C 0.268 3.732 11 C -0.556 4.556 12 H 0.052 0.948 13 C 0.025 3.975 14 N -0.916 5.916 15 Si 0.970 3.030 16 H -0.273 1.273 17 H -0.273 1.273 18 H -0.267 1.267 19 C 0.148 3.852 20 C -0.087 4.087 21 C 0.188 3.812 22 C -0.153 4.153 23 C -0.158 4.158 24 C 0.499 3.501 25 O -0.528 6.528 26 O -0.488 6.488 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.091 0.909 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.241 0.759 33 H 0.050 0.950 34 H 0.031 0.969 35 H 0.274 0.726 36 H 0.091 0.909 37 H 0.099 0.901 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.054 0.946 42 H 0.075 0.925 43 H 0.084 0.916 44 H 0.078 0.922 45 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 0.053 22.151 22.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.039 4.039 3 N -0.334 5.334 4 C 0.404 3.596 5 O -0.443 6.443 6 C -0.344 4.344 7 C -0.133 4.133 8 N -0.157 5.157 9 N -0.115 5.115 10 C 0.149 3.851 11 C -0.594 4.594 12 H 0.070 0.930 13 C -0.177 4.177 14 N -0.554 5.554 15 Si 0.794 3.206 16 H -0.198 1.198 17 H -0.198 1.198 18 H -0.192 1.192 19 C 0.012 3.988 20 C -0.145 4.145 21 C 0.102 3.898 22 C -0.211 4.211 23 C -0.215 4.215 24 C 0.341 3.659 25 O -0.417 6.417 26 O -0.302 6.302 27 H 0.108 0.892 28 H 0.064 0.936 29 H 0.110 0.890 30 H 0.103 0.897 31 H 0.117 0.883 32 H 0.257 0.743 33 H 0.067 0.933 34 H 0.049 0.951 35 H 0.083 0.917 36 H 0.110 0.890 37 H 0.118 0.882 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.073 0.927 42 H 0.094 0.906 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -2.997 0.077 20.840 21.055 hybrid contribution 0.812 -0.307 0.168 0.885 sum -2.185 -0.230 21.009 21.123 Atomic orbital electron populations 1.22468 0.93852 1.04062 1.03045 1.22461 0.96460 0.80909 1.04025 1.47723 1.67051 1.15041 1.03587 1.17015 0.76456 0.84003 0.82169 1.90628 1.46066 1.20558 1.87049 1.19870 1.20206 1.01962 0.92399 1.25786 0.96792 0.96044 0.94683 1.77146 1.21890 1.10806 1.05860 1.49139 1.39687 1.14474 1.08207 1.19342 0.98022 0.98216 0.69487 1.21370 1.06277 1.38995 0.92808 0.92980 1.25715 1.00219 0.95263 0.96471 1.69988 1.37135 1.43870 1.04437 0.85421 0.78867 0.78871 0.77454 1.19829 1.19808 1.19152 1.21950 0.93752 0.93734 0.89377 1.20563 1.00407 0.90513 1.03065 1.20334 0.97955 0.91666 0.79823 1.22135 0.91909 1.02694 1.04318 1.22183 0.99386 0.95583 1.04377 1.22945 0.78443 0.78176 0.86360 1.90747 1.48894 1.65235 1.36779 1.84866 1.41727 1.52813 1.50815 0.89151 0.93576 0.89036 0.89749 0.88258 0.74325 0.93259 0.95109 0.91658 0.89013 0.88204 0.91329 0.89876 0.89952 0.92680 0.90625 0.89706 0.90331 0.71063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.64 8.05 71.98 0.58 -2.06 16 2 C 0.08 1.49 4.79 86.38 0.41 1.91 16 3 N -0.60 -13.94 2.43 -782.64 -1.90 -15.83 16 4 C 0.61 18.86 7.06 86.67 0.61 19.47 16 5 O -0.56 -18.99 11.16 -4.04 -0.05 -19.04 16 6 C -0.33 -11.63 5.95 -20.15 -0.12 -11.74 16 7 C 0.05 1.76 8.43 85.65 0.72 2.48 16 8 N -0.34 -14.44 12.50 -56.27 -0.70 -15.14 16 9 N -0.34 -15.49 3.56 -336.72 -1.20 -16.69 16 10 C 0.27 13.76 5.78 85.63 0.50 14.26 16 11 C -0.56 -30.46 9.39 25.60 0.24 -30.22 16 12 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 13 C 0.02 1.33 5.46 84.65 0.46 1.80 16 14 N -0.92 -51.06 13.29 21.45 0.28 -50.78 16 15 Si 0.97 42.37 29.54 68.60 2.03 44.39 16 16 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 17 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 18 H -0.27 -11.30 7.11 99.48 0.71 -10.60 16 19 C 0.15 5.98 7.00 42.14 0.30 6.28 16 20 C -0.09 -3.13 9.28 71.24 0.66 -2.47 16 21 C 0.19 3.89 0.99 2.86 0.00 3.89 16 22 C -0.15 -3.46 7.85 71.98 0.56 -2.90 16 23 C -0.16 -3.01 8.38 71.98 0.60 -2.41 16 24 C 0.50 8.57 6.02 71.24 0.43 9.00 16 25 O -0.53 -11.78 16.77 21.96 0.37 -11.41 16 26 O -0.49 -4.60 7.79 -51.36 -0.40 -5.00 16 27 H 0.09 1.20 5.96 -2.38 -0.01 1.18 16 28 H 0.05 0.92 6.17 -2.39 -0.01 0.91 16 29 H 0.09 0.95 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.74 4.81 -2.38 -0.01 1.73 16 31 H 0.10 1.39 5.56 -2.39 -0.01 1.38 16 32 H 0.24 5.84 3.22 -2.91 -0.01 5.83 16 33 H 0.05 2.54 7.62 -2.39 -0.02 2.52 16 34 H 0.03 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.27 14.32 8.31 -92.70 -0.77 13.55 16 36 H 0.09 2.96 8.14 -2.38 -0.02 2.94 16 37 H 0.10 3.41 6.65 -2.39 -0.02 3.39 16 38 H 0.07 2.61 7.70 -2.39 -0.02 2.60 16 39 H 0.08 2.19 6.03 -2.39 -0.01 2.18 16 40 H 0.08 1.67 7.92 -2.39 -0.02 1.65 16 41 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.08 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.08 1.86 6.31 -2.38 -0.02 1.85 16 45 H 0.43 0.24 9.10 -74.06 -0.67 -0.43 16 Total: -1.00 -68.76 354.81 4.77 -63.99 By element: Atomic # 1 Polarization: 17.85 SS G_CDS: 0.37 Total: 18.23 kcal Atomic # 6 Polarization: 1.33 SS G_CDS: 5.96 Total: 7.29 kcal Atomic # 7 Polarization: -94.93 SS G_CDS: -3.52 Total: -98.44 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -0.08 Total: -35.46 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.39 kcal Total: -68.76 4.77 -63.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605403880.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.653 kcal (2) G-P(sol) polarization free energy of solvation -68.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds