Wall clock time and date at job start Tue Mar 31 2020 14:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47379 * 2 1 4 4 C 1.46500 * 119.99887 * 270.00041 * 3 2 1 5 5 C 1.50701 * 109.47043 * 270.00074 * 4 3 2 6 6 H 1.08004 * 120.00009 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00368 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99902 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00170 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47278 * 90.00118 * 9 7 5 11 11 H 1.48510 * 109.46978 * 209.99711 * 9 7 5 12 12 H 1.48494 * 109.47222 * 329.99389 * 9 7 5 13 13 C 1.34779 * 120.00284 * 89.99496 * 3 2 1 14 14 O 1.21281 * 119.99733 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00180 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47254 * 179.97438 * 15 13 3 17 17 C 1.46846 * 111.00056 * 170.00214 * 16 15 13 18 18 C 1.53035 * 109.52744 * 185.84176 * 17 16 15 19 19 C 1.53124 * 109.27475 * 300.82106 * 18 17 16 20 20 C 1.47198 * 109.57348 * 297.71661 * 19 18 17 21 21 N 7.53745 * 116.91194 * 82.35128 * 2 1 3 22 22 C 1.50702 * 109.52429 * 177.55754 * 19 18 17 23 23 O 1.20824 * 119.99856 * 240.32022 * 22 19 18 24 24 O 1.34229 * 119.99736 * 60.31316 * 22 19 18 25 25 C 1.53123 * 109.16220 * 57.64849 * 19 18 17 26 26 C 1.46846 * 110.99964 * 294.21182 * 16 15 13 27 27 H 1.08996 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47423 * 300.00449 * 1 2 3 29 29 H 1.09002 * 109.46781 * 60.00065 * 1 2 3 30 30 H 1.08999 * 109.47423 * 239.99551 * 2 1 3 31 31 H 1.09002 * 109.46920 * 119.99399 * 2 1 3 32 32 H 1.09005 * 109.47073 * 29.98949 * 4 3 2 33 33 H 1.09001 * 109.47463 * 149.99633 * 4 3 2 34 34 H 0.96998 * 120.00313 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47122 * 59.99894 * 15 13 3 36 36 H 1.09003 * 109.47471 * 300.00585 * 15 13 3 37 37 H 1.09008 * 109.46456 * 305.85644 * 17 16 15 38 38 H 1.09003 * 109.46474 * 65.82149 * 17 16 15 39 39 H 1.08993 * 109.50220 * 60.75645 * 18 17 16 40 40 H 1.08992 * 109.50519 * 180.88040 * 18 17 16 41 41 H 0.96702 * 116.99845 * 180.02562 * 24 22 19 42 42 H 1.09001 * 109.50279 * 182.40035 * 25 19 18 43 43 H 1.09000 * 109.49827 * 62.29028 * 25 19 18 44 44 H 1.09009 * 109.46169 * 294.17270 * 26 16 15 45 45 H 1.08995 * 109.46669 * 54.15371 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3902 -2.8774 8 7 3.3496 3.1264 -3.6176 9 14 5.9139 2.0971 -3.4163 10 1 5.9777 0.8765 -4.2595 11 1 6.3930 3.2649 -4.1988 12 1 6.7738 1.9173 -2.2190 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9922 1.3062 2.4723 16 7 2.3109 2.2061 3.5888 17 6 1.8588 1.6403 4.8662 18 6 2.0744 2.6634 5.9837 19 6 3.5611 3.0223 6.0605 20 6 4.3415 1.8209 6.3989 21 7 4.9416 0.8946 6.6614 22 6 3.7712 4.0741 7.1191 23 8 4.2386 5.1473 6.8200 24 8 3.4391 3.8185 8.3943 25 6 4.0182 3.5638 4.7032 26 6 3.7461 2.5146 3.6229 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6756 3.5168 -4.4435 35 1 2.6227 0.4189 2.5299 36 1 0.9444 1.0116 2.5302 37 1 0.7992 1.3934 4.7995 38 1 2.4288 0.7374 5.0855 39 1 1.4939 3.5613 5.7720 40 1 1.7533 2.2374 6.9341 41 1 3.5919 4.5242 9.0376 42 1 5.0858 3.7811 4.7389 43 1 3.4682 4.4759 4.4714 44 1 4.3073 1.6076 3.8481 45 1 4.0574 2.9029 2.6532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605437552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:48 Heat of formation + Delta-G solvation = -85.558709 kcal Electronic energy + Delta-G solvation = -28092.441734 eV Core-core repulsion = 24110.504037 eV Total energy + Delta-G solvation = -3981.937698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.34186 -39.66100 -38.53471 -36.64858 -36.49573 -35.25962 -33.94275 -32.77006 -31.21154 -30.10870 -28.92124 -26.91124 -24.91705 -23.64130 -23.02637 -22.52049 -22.26794 -21.27296 -18.67690 -18.33548 -17.74528 -17.13239 -16.49177 -16.25683 -15.93625 -15.63618 -15.28395 -14.89244 -14.74877 -14.48707 -14.23127 -13.96584 -13.79164 -13.60129 -13.35761 -13.02039 -12.80913 -12.78953 -12.63411 -12.35153 -12.01781 -11.99470 -11.94799 -11.73727 -11.46085 -11.44745 -11.36595 -11.17461 -10.91295 -10.84993 -10.73245 -10.65869 -10.51428 -10.10909 -9.62838 -8.93052 -8.43527 -8.26276 -7.64785 -6.04342 -4.09121 1.55896 2.07011 2.33459 2.74872 3.29664 3.31269 3.36474 3.38763 3.44130 3.54435 4.09306 4.15965 4.21100 4.44813 4.64261 4.84568 4.97610 5.00127 5.16527 5.23210 5.25935 5.29535 5.31515 5.41924 5.47184 5.51742 5.59558 5.63582 5.68728 5.78544 5.96094 6.01063 6.05578 6.16210 6.22545 6.46587 6.82878 6.99925 7.06301 7.12261 7.38291 7.46263 7.55961 7.92379 8.23781 8.43688 8.90705 9.12104 9.56237 11.03598 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.003246 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.271318 B = 8624.428602 C = 9537.157873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.106 3.894 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.056 0.944 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.285 1.285 12 H -0.274 1.274 13 C 0.506 3.494 14 O -0.523 6.523 15 C 0.037 3.963 16 N -0.517 5.517 17 C 0.052 3.948 18 C -0.101 4.101 19 C 0.052 3.948 20 C 0.215 3.785 21 N -0.402 5.402 22 C 0.496 3.504 23 O -0.486 6.486 24 O -0.510 6.510 25 C -0.092 4.092 26 C 0.046 3.954 27 H 0.058 0.942 28 H 0.051 0.949 29 H 0.061 0.939 30 H 0.082 0.918 31 H 0.062 0.938 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.263 0.737 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.035 0.965 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.416 0.584 42 H 0.086 0.914 43 H 0.109 0.891 44 H 0.028 0.972 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.238 -3.606 20.821 22.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.018 4.018 3 N -0.331 5.331 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.074 0.926 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.199 1.199 13 C 0.292 3.708 14 O -0.399 6.399 15 C -0.094 4.094 16 N -0.242 5.242 17 C -0.076 4.076 18 C -0.139 4.139 19 C 0.047 3.953 20 C -0.104 4.104 21 N -0.076 5.076 22 C 0.335 3.665 23 O -0.371 6.371 24 O -0.322 6.322 25 C -0.131 4.131 26 C -0.081 4.081 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.080 0.920 30 H 0.100 0.900 31 H 0.080 0.920 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.075 0.925 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.109 0.891 41 H 0.276 0.724 42 H 0.104 0.896 43 H 0.128 0.872 44 H 0.046 0.954 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.291 -3.852 20.584 21.599 hybrid contribution 1.279 -0.249 0.067 1.305 sum -4.012 -4.101 20.651 21.433 Atomic orbital electron populations 1.22220 0.96756 1.01349 1.02402 1.21408 0.93541 0.84343 1.02549 1.48266 1.63998 1.13150 1.07724 1.19247 0.96119 0.93685 0.78048 1.21427 0.96965 1.31847 1.06256 0.92598 1.24922 0.97754 0.94921 0.96434 1.69927 1.35665 1.33392 1.14308 0.86528 0.84797 0.77671 0.78602 1.20704 1.21070 1.19940 1.20071 0.78972 0.87099 0.84668 1.90639 1.44907 1.17611 1.86730 1.22076 1.02493 0.94177 0.90688 1.61603 1.17112 1.43916 1.01536 1.22152 1.01724 0.94898 0.88849 1.21754 0.89703 1.02350 1.00124 1.18333 0.97146 0.85371 0.94473 1.28142 0.94057 0.94307 0.93909 1.81177 1.08554 1.10427 1.07474 1.22603 0.74133 0.87448 0.82321 1.90795 1.39500 1.25135 1.81715 1.84522 1.78942 1.49719 1.19017 1.21692 1.03158 1.00590 0.87621 1.22379 0.87224 0.96755 1.01741 0.92260 0.93026 0.91969 0.89984 0.92010 0.95123 0.93794 0.92724 0.92468 0.88220 0.89051 0.94710 0.87809 0.89093 0.72425 0.89566 0.87244 0.95409 0.86346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.11 10.24 37.16 0.38 -1.73 16 2 C 0.11 1.60 5.93 -4.04 -0.02 1.58 16 3 N -0.60 -12.00 2.46 -175.06 -0.43 -12.43 16 4 C 0.25 6.29 5.16 -5.19 -0.03 6.26 16 5 C -0.53 -14.61 9.39 -34.44 -0.32 -14.93 16 6 H 0.06 1.55 7.81 -52.48 -0.41 1.14 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.51 9.82 7.35 -10.99 -0.08 9.74 16 14 O -0.52 -12.24 13.91 5.56 0.08 -12.17 16 15 C 0.04 0.50 4.00 -4.98 -0.02 0.48 16 16 N -0.52 -6.67 4.40 -236.12 -1.04 -7.70 16 17 C 0.05 0.48 5.25 -3.84 -0.02 0.46 16 18 C -0.10 -0.78 4.79 -26.65 -0.13 -0.91 16 19 C 0.05 0.50 0.66 -158.32 -0.10 0.40 16 20 C 0.21 2.45 11.51 -20.81 -0.24 2.21 16 21 N -0.40 -5.40 18.53 42.10 0.78 -4.62 16 22 C 0.50 4.58 6.90 36.01 0.25 4.83 16 23 O -0.49 -5.78 16.73 -18.75 -0.31 -6.10 16 24 O -0.51 -3.24 13.26 -39.25 -0.52 -3.76 16 25 C -0.09 -1.07 4.16 -26.65 -0.11 -1.18 16 26 C 0.05 0.64 4.90 -3.84 -0.02 0.62 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.05 0.60 7.22 -51.93 -0.38 0.22 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 31 H 0.06 0.77 6.44 -51.93 -0.33 0.44 16 32 H 0.03 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.04 1.27 7.42 -51.93 -0.39 0.88 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.06 0.74 7.38 -51.93 -0.38 0.35 16 36 H 0.10 1.13 7.03 -51.93 -0.37 0.76 16 37 H 0.09 0.67 8.02 -51.92 -0.42 0.26 16 38 H 0.03 0.34 7.32 -51.93 -0.38 -0.04 16 39 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.42 0.80 9.10 45.56 0.41 1.22 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 43 H 0.11 1.32 8.04 -51.93 -0.42 0.90 16 44 H 0.03 0.38 7.32 -51.92 -0.38 0.00 16 45 H 0.12 2.07 5.78 -51.93 -0.30 1.77 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -35.20 373.17 -6.49 -41.69 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.82 Total: -1.14 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: -0.57 Total: 9.47 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.05 Total: -50.30 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.76 Total: -22.02 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.20 -6.49 -41.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.872 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds