Wall clock time and date at job start Tue Mar 31 2020 14:35:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46500 * 109.47379 * 2 1 4 4 C 1.46500 * 119.99887 * 270.00041 * 3 2 1 5 5 C 1.50701 * 109.47043 * 270.00074 * 4 3 2 6 6 H 1.08004 * 120.00009 * 359.97438 * 5 4 3 7 7 C 1.37874 * 120.00368 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99902 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00170 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47278 * 90.00118 * 9 7 5 11 11 H 1.48510 * 109.46978 * 209.99711 * 9 7 5 12 12 H 1.48494 * 109.47222 * 329.99389 * 9 7 5 13 13 C 1.34779 * 120.00284 * 89.99496 * 3 2 1 14 14 O 1.21281 * 119.99733 * 180.02562 * 13 3 2 15 15 C 1.50692 * 120.00180 * 0.02562 * 13 3 2 16 16 N 1.46898 * 109.47254 * 179.97438 * 15 13 3 17 17 C 1.46846 * 111.00056 * 170.00214 * 16 15 13 18 18 C 1.53035 * 109.52744 * 185.84176 * 17 16 15 19 19 C 1.53124 * 109.27475 * 300.82106 * 18 17 16 20 20 C 1.47198 * 109.57348 * 297.71661 * 19 18 17 21 21 N 7.53745 * 116.91194 * 82.35128 * 2 1 3 22 22 C 1.50702 * 109.52429 * 177.55754 * 19 18 17 23 23 O 1.20824 * 119.99856 * 240.32022 * 22 19 18 24 24 O 1.34229 * 119.99736 * 60.31316 * 22 19 18 25 25 C 1.53123 * 109.16220 * 57.64849 * 19 18 17 26 26 C 1.46846 * 110.99964 * 294.21182 * 16 15 13 27 27 H 1.08996 * 109.47265 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47423 * 300.00449 * 1 2 3 29 29 H 1.09002 * 109.46781 * 60.00065 * 1 2 3 30 30 H 1.08999 * 109.47423 * 239.99551 * 2 1 3 31 31 H 1.09002 * 109.46920 * 119.99399 * 2 1 3 32 32 H 1.09005 * 109.47073 * 29.98949 * 4 3 2 33 33 H 1.09001 * 109.47463 * 149.99633 * 4 3 2 34 34 H 0.96998 * 120.00313 * 180.02562 * 8 7 5 35 35 H 1.09002 * 109.47122 * 59.99894 * 15 13 3 36 36 H 1.09003 * 109.47471 * 300.00585 * 15 13 3 37 37 H 1.09008 * 109.46456 * 305.85644 * 17 16 15 38 38 H 1.09003 * 109.46474 * 65.82149 * 17 16 15 39 39 H 1.08993 * 109.50220 * 60.75645 * 18 17 16 40 40 H 1.08992 * 109.50519 * 180.88040 * 18 17 16 41 41 H 0.96702 * 116.99845 * 180.02562 * 24 22 19 42 42 H 1.09001 * 109.50279 * 182.40035 * 25 19 18 43 43 H 1.09000 * 109.49827 * 62.29028 * 25 19 18 44 44 H 1.09009 * 109.46169 * 294.17270 * 26 16 15 45 45 H 1.08995 * 109.46669 * 54.15371 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.6858 1.8349 -1.7038 6 1 4.3429 1.2307 -1.0958 7 6 4.1495 2.3902 -2.8774 8 7 3.3496 3.1264 -3.6176 9 14 5.9139 2.0971 -3.4163 10 1 5.9777 0.8765 -4.2595 11 1 6.3930 3.2649 -4.1988 12 1 6.7738 1.9173 -2.2190 13 6 2.2429 2.0166 1.1672 14 8 2.6468 3.1602 1.1671 15 6 1.9922 1.3062 2.4723 16 7 2.3109 2.2061 3.5888 17 6 1.8588 1.6403 4.8662 18 6 2.0744 2.6634 5.9837 19 6 3.5611 3.0223 6.0605 20 6 4.3415 1.8209 6.3989 21 7 4.9416 0.8946 6.6614 22 6 3.7712 4.0741 7.1191 23 8 4.2386 5.1473 6.8200 24 8 3.4391 3.8185 8.3943 25 6 4.0182 3.5638 4.7032 26 6 3.7461 2.5146 3.6229 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 1.5818 1.6875 -2.0284 33 1 2.0956 3.1410 -1.1385 34 1 3.6756 3.5168 -4.4435 35 1 2.6227 0.4189 2.5299 36 1 0.9444 1.0116 2.5302 37 1 0.7992 1.3934 4.7995 38 1 2.4288 0.7374 5.0855 39 1 1.4939 3.5613 5.7720 40 1 1.7533 2.2374 6.9341 41 1 3.5919 4.5242 9.0376 42 1 5.0858 3.7811 4.7389 43 1 3.4682 4.4759 4.4714 44 1 4.3073 1.6076 3.8481 45 1 4.0574 2.9029 2.6532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605437552.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:47 Heat of formation + Delta-G solvation = -111.708925 kcal Electronic energy + Delta-G solvation = -28093.575693 eV Core-core repulsion = 24110.504037 eV Total energy + Delta-G solvation = -3983.071656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.12790 -40.88368 -39.64204 -37.55927 -37.27457 -36.78746 -35.06243 -34.69998 -32.05865 -31.58431 -30.18634 -28.51346 -26.15448 -24.65099 -24.43791 -23.81030 -23.17876 -22.19658 -19.82977 -19.38374 -18.61665 -18.46187 -18.13975 -17.51820 -17.23840 -16.57750 -16.51182 -16.26943 -15.83638 -15.60619 -15.41999 -15.08351 -14.87681 -14.61352 -14.49798 -14.34544 -14.12865 -13.75884 -13.65552 -13.57903 -13.32147 -13.14095 -13.11385 -12.94851 -12.65961 -12.65013 -12.57366 -12.44871 -12.33152 -12.20078 -12.11468 -11.87391 -11.71986 -11.61261 -11.50749 -10.62730 -10.42612 -9.36390 -9.29151 -8.20629 -6.35178 0.81613 1.28901 1.35617 1.38492 1.43804 1.48374 1.93644 1.99372 2.24867 2.41049 2.49511 2.94679 3.08605 3.34161 3.43769 3.73017 3.94717 4.06093 4.13671 4.15499 4.27875 4.34913 4.39581 4.48191 4.51207 4.61209 4.68073 4.73311 4.87385 4.95532 5.00520 5.03764 5.05466 5.10649 5.12489 5.27163 5.44517 5.44627 5.61387 5.84193 5.93184 6.09883 6.10052 6.18202 6.73646 6.83744 6.89966 7.31544 7.60447 8.85912 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015203 B = 0.003246 C = 0.002935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.271318 B = 8624.428602 C = 9537.157873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 N -0.607 5.607 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.051 0.949 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.963 3.037 10 H -0.264 1.264 11 H -0.281 1.281 12 H -0.275 1.275 13 C 0.495 3.505 14 O -0.574 6.574 15 C 0.051 3.949 16 N -0.530 5.530 17 C 0.051 3.949 18 C -0.097 4.097 19 C 0.055 3.945 20 C 0.234 3.766 21 N -0.437 5.437 22 C 0.508 3.492 23 O -0.518 6.518 24 O -0.498 6.498 25 C -0.087 4.087 26 C 0.053 3.947 27 H 0.093 0.907 28 H 0.065 0.935 29 H 0.036 0.964 30 H 0.067 0.933 31 H 0.098 0.902 32 H 0.019 0.981 33 H -0.003 1.003 34 H 0.266 0.734 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.121 0.879 38 H 0.036 0.964 39 H 0.113 0.887 40 H 0.120 0.880 41 H 0.437 0.563 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.026 0.974 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.123 -5.500 23.279 24.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.023 4.023 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.069 0.931 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.788 3.212 10 H -0.189 1.189 11 H -0.207 1.207 12 H -0.199 1.199 13 C 0.283 3.717 14 O -0.454 6.454 15 C -0.080 4.080 16 N -0.255 5.255 17 C -0.076 4.076 18 C -0.135 4.135 19 C 0.050 3.950 20 C -0.085 4.085 21 N -0.112 5.112 22 C 0.348 3.652 23 O -0.406 6.406 24 O -0.313 6.313 25 C -0.126 4.126 26 C -0.075 4.075 27 H 0.112 0.888 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.086 0.914 31 H 0.116 0.884 32 H 0.037 0.963 33 H 0.015 0.985 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.154 0.846 37 H 0.139 0.861 38 H 0.054 0.946 39 H 0.131 0.869 40 H 0.139 0.861 41 H 0.301 0.699 42 H 0.099 0.901 43 H 0.120 0.880 44 H 0.044 0.956 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.206 -5.795 23.094 24.605 hybrid contribution 1.521 0.365 -0.652 1.694 sum -4.685 -5.430 22.442 23.560 Atomic orbital electron populations 1.22146 0.94366 1.03412 1.01884 1.21722 0.95474 0.81477 1.03605 1.48290 1.64359 1.15000 1.06251 1.18628 0.94896 0.91561 0.80506 1.21712 0.98025 1.31741 1.06400 0.93112 1.25810 1.02098 0.94569 0.96543 1.70046 1.37667 1.34245 1.14778 0.85480 0.79374 0.78159 0.78177 1.18929 1.20663 1.19943 1.21176 0.77485 0.86783 0.86222 1.90617 1.46937 1.20186 1.87647 1.22005 1.04840 0.93619 0.87496 1.61570 1.16163 1.44663 1.03086 1.22326 1.03281 0.95032 0.86954 1.21869 0.87898 1.02698 1.01062 1.18304 0.98383 0.84776 0.93497 1.28327 0.93264 0.94006 0.92853 1.81199 1.09587 1.11705 1.08704 1.22324 0.73404 0.86511 0.83000 1.90802 1.41088 1.26349 1.82343 1.84466 1.78079 1.50626 1.18104 1.21536 1.02878 0.99720 0.88496 1.22132 0.88253 0.96971 1.00114 0.88805 0.91586 0.94470 0.91436 0.88425 0.96312 0.98468 0.92469 0.90861 0.84642 0.86100 0.94603 0.86871 0.86129 0.69911 0.90136 0.87952 0.95551 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.63 10.24 71.98 0.74 -2.89 16 2 C 0.10 2.87 5.93 86.38 0.51 3.39 16 3 N -0.61 -24.80 2.46 -826.16 -2.03 -26.83 16 4 C 0.27 14.22 5.16 85.63 0.44 14.66 16 5 C -0.54 -31.12 9.39 25.60 0.24 -30.88 16 6 H 0.05 2.90 7.81 -2.91 -0.02 2.88 16 7 C 0.01 0.51 5.46 84.65 0.46 0.97 16 8 N -0.93 -56.35 13.29 21.45 0.28 -56.06 16 9 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 13 C 0.50 19.49 7.35 87.65 0.64 20.13 16 14 O -0.57 -28.40 13.91 -3.03 -0.04 -28.44 16 15 C 0.05 1.29 4.00 85.55 0.34 1.63 16 16 N -0.53 -12.79 4.40 -900.94 -3.96 -16.75 16 17 C 0.05 0.75 5.25 86.33 0.45 1.21 16 18 C -0.10 -1.17 4.79 30.65 0.15 -1.02 16 19 C 0.06 0.97 0.66 -54.65 -0.04 0.93 16 20 C 0.23 4.92 11.51 89.46 1.03 5.95 16 21 N -0.44 -11.11 18.53 19.99 0.37 -10.74 16 22 C 0.51 8.36 6.90 71.24 0.49 8.85 16 23 O -0.52 -11.83 16.73 21.97 0.37 -11.46 16 24 O -0.50 -4.77 13.26 -51.41 -0.68 -5.45 16 25 C -0.09 -2.04 4.16 30.65 0.13 -1.91 16 26 C 0.05 1.49 4.90 86.32 0.42 1.91 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.07 1.31 7.22 -2.39 -0.02 1.29 16 29 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16 31 H 0.10 2.12 6.44 -2.39 -0.02 2.11 16 32 H 0.02 1.03 8.07 -2.38 -0.02 1.01 16 33 H 0.00 -0.17 7.42 -2.39 -0.02 -0.19 16 34 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.07 1.66 7.38 -2.39 -0.02 1.64 16 36 H 0.14 2.47 7.03 -2.39 -0.02 2.45 16 37 H 0.12 1.14 8.02 -2.38 -0.02 1.12 16 38 H 0.04 0.55 7.32 -2.39 -0.02 0.54 16 39 H 0.11 1.24 8.14 -2.39 -0.02 1.23 16 40 H 0.12 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.44 0.31 9.10 -74.06 -0.67 -0.36 16 42 H 0.08 1.91 8.14 -2.39 -0.02 1.90 16 43 H 0.10 2.54 8.04 -2.39 -0.02 2.52 16 44 H 0.03 0.72 7.32 -2.38 -0.02 0.70 16 45 H 0.07 2.76 5.78 -2.39 -0.01 2.74 16 Total: -1.00 -82.09 373.17 2.70 -79.40 By element: Atomic # 1 Polarization: 5.76 SS G_CDS: 0.35 Total: 6.11 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: 6.02 Total: 22.92 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -5.34 Total: -110.39 kcal Atomic # 8 Polarization: -45.00 SS G_CDS: -0.36 Total: -45.35 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -82.09 2.70 -79.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605437552.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.314 kcal (2) G-P(sol) polarization free energy of solvation -82.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds