Wall clock time and date at job start Tue Mar 31 2020 13:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99900 * 2 1 4 4 C 1.53002 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47256 * 64.29738 * 4 3 2 6 6 N 1.28391 * 119.10095 * 262.33113 * 5 4 3 7 7 C 1.31404 * 122.26310 * 180.27862 * 6 5 4 8 8 C 1.47885 * 119.89116 * 179.74195 * 7 6 5 9 9 O 1.21554 * 120.00482 * 174.13294 * 8 7 6 10 10 N 1.34776 * 120.00202 * 354.13192 * 8 7 6 11 11 C 1.46505 * 120.00412 * 176.03505 * 10 8 7 12 12 C 1.50699 * 109.46819 * 90.00019 * 11 10 8 13 13 H 1.07994 * 120.00266 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99663 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99699 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47117 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46783 * 119.99936 * 16 14 12 19 19 H 1.48499 * 109.46811 * 239.99615 * 16 14 12 20 20 C 1.46507 * 119.99649 * 356.03594 * 10 8 7 21 21 C 1.52998 * 109.46868 * 307.66405 * 20 10 8 22 22 C 1.52994 * 109.46958 * 67.66542 * 20 10 8 23 23 C 1.41573 * 120.21609 * 359.46405 * 7 6 5 24 24 C 1.36332 * 118.23946 * 0.25695 * 23 7 6 25 25 C 1.34614 * 119.10159 * 82.07386 * 5 4 3 26 26 O 1.21975 * 120.22587 * 0.02562 * 25 5 4 27 27 H 1.08996 * 109.47224 * 300.00004 * 1 2 3 28 28 H 1.09004 * 109.47221 * 59.99613 * 1 2 3 29 29 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47531 * 60.00044 * 3 2 1 31 31 H 1.08999 * 109.47116 * 300.00032 * 3 2 1 32 32 H 1.09001 * 109.47184 * 304.29315 * 4 3 2 33 33 H 1.09005 * 109.46789 * 184.29485 * 4 3 2 34 34 H 1.09000 * 109.47154 * 209.99921 * 11 10 8 35 35 H 1.08997 * 109.46693 * 330.00017 * 11 10 8 36 36 H 0.96995 * 119.99433 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.47007 * 187.66398 * 20 10 8 38 38 H 1.08993 * 109.47239 * 28.99088 * 21 20 10 39 39 H 1.09000 * 109.46815 * 148.99545 * 21 20 10 40 40 H 1.08996 * 109.47055 * 268.98573 * 21 20 10 41 41 H 1.09001 * 109.47496 * 91.20157 * 22 20 10 42 42 H 1.09009 * 109.47044 * 211.20285 * 22 20 10 43 43 H 1.09006 * 109.47542 * 331.20184 * 22 20 10 44 44 H 1.08007 * 120.88435 * 180.28136 * 23 7 6 45 45 H 1.07994 * 121.03111 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9744 0.5492 -1.2454 6 7 4.2251 -0.7100 -1.2491 7 6 4.6275 -1.3420 -2.3286 8 6 4.9069 -2.7931 -2.2720 9 8 5.1756 -3.4005 -3.2900 10 7 4.8636 -3.4422 -1.0917 11 6 5.0544 -4.8941 -1.0466 12 6 6.5194 -5.2031 -0.8759 13 1 7.2366 -4.3985 -0.8075 14 6 6.9443 -6.5130 -0.8072 15 7 6.0708 -7.4927 -0.8901 16 14 8.7604 -6.8960 -0.5965 17 1 9.5293 -5.6274 -0.5293 18 1 8.9619 -7.6634 0.6588 19 1 9.2335 -7.7018 -1.7506 20 6 4.6256 -2.6959 0.1464 21 6 5.6178 -1.5350 0.2407 22 6 3.1974 -2.1473 0.1447 23 6 4.7889 -0.6394 -3.5470 24 6 4.5217 0.6974 -3.5611 25 6 4.0990 1.3004 -2.3555 26 8 3.8491 2.4938 -2.3206 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8523 0.5786 0.8481 33 1 3.9785 2.1776 0.0763 34 1 4.4956 -5.3081 -0.2073 35 1 4.6955 -5.3367 -1.9757 36 1 6.3697 -8.4142 -0.8422 37 1 4.7593 -3.3585 1.0015 38 1 5.8921 -1.2091 -0.7626 39 1 5.1573 -0.7064 0.7787 40 1 6.5106 -1.8625 0.7733 41 1 2.5308 -2.8680 0.6184 42 1 3.1683 -1.2079 0.6969 43 1 2.8754 -1.9752 -0.8824 44 1 5.1148 -1.1489 -4.4418 45 1 4.6293 1.2772 -4.4658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647078981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:58 Heat of formation + Delta-G solvation = 27.305002 kcal Electronic energy + Delta-G solvation = -29681.031599 eV Core-core repulsion = 25703.988039 eV Total energy + Delta-G solvation = -3977.043560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.45351 -39.49279 -38.16766 -37.58761 -36.06630 -34.93131 -33.13753 -31.74611 -31.06431 -30.07443 -27.33542 -26.94289 -26.67517 -25.30950 -24.61356 -23.42067 -22.42958 -21.57480 -19.45518 -18.36067 -17.39062 -16.98950 -16.68676 -16.47888 -16.38825 -16.13392 -15.52259 -15.37163 -14.94069 -14.46061 -14.33011 -14.18227 -13.71454 -13.63111 -13.43443 -13.13162 -12.95578 -12.74933 -12.38334 -12.15722 -12.11665 -11.80585 -11.42958 -11.31612 -11.12999 -11.05492 -10.87528 -10.70235 -10.59031 -10.39037 -10.28675 -10.10043 -9.95384 -9.59311 -9.39429 -9.19829 -8.42797 -8.32882 -7.67952 -6.03619 -4.07828 0.54613 1.29924 2.05392 3.08707 3.30933 3.38647 3.41811 3.42702 3.67754 3.87876 4.09306 4.45627 4.57094 4.61399 4.71631 4.82131 4.92963 4.96306 5.05986 5.11982 5.14067 5.27806 5.31226 5.40867 5.48108 5.59422 5.66526 5.68888 5.75448 5.92533 6.01265 6.05309 6.21763 6.38754 6.44629 6.58587 6.78149 6.84058 7.06831 7.41127 7.49564 7.55286 7.91991 7.97626 8.22703 8.35445 8.84429 9.01347 9.57011 11.04513 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.004096 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.972083 B = 6835.032696 C = 7484.576113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.375 6.375 3 C 0.042 3.958 4 C 0.110 3.890 5 N -0.344 5.344 6 N -0.117 5.117 7 C -0.016 4.016 8 C 0.574 3.426 9 O -0.529 6.529 10 N -0.571 5.571 11 C 0.246 3.754 12 C -0.523 4.523 13 H 0.059 0.941 14 C 0.061 3.939 15 N -0.895 5.895 16 Si 0.897 3.103 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.141 3.859 21 C -0.149 4.149 22 C -0.127 4.127 23 C -0.013 4.013 24 C -0.220 4.220 25 C 0.482 3.518 26 O -0.543 6.543 27 H 0.041 0.959 28 H 0.038 0.962 29 H 0.088 0.912 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.036 0.964 35 H 0.045 0.955 36 H 0.262 0.738 37 H 0.090 0.910 38 H 0.060 0.940 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.038 0.962 42 H 0.067 0.933 43 H 0.059 0.941 44 H 0.159 0.841 45 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.020 17.857 3.685 20.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.294 6.294 3 C -0.035 4.035 4 C -0.010 4.010 5 N -0.166 5.166 6 N 0.052 4.948 7 C -0.183 4.183 8 C 0.357 3.643 9 O -0.405 6.405 10 N -0.302 5.302 11 C 0.127 3.873 12 C -0.562 4.562 13 H 0.077 0.923 14 C -0.140 4.140 15 N -0.534 5.534 16 Si 0.725 3.275 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C 0.037 3.963 21 C -0.207 4.207 22 C -0.185 4.185 23 C -0.036 4.036 24 C -0.250 4.250 25 C 0.282 3.718 26 O -0.423 6.423 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.107 0.893 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.135 0.865 33 H 0.135 0.865 34 H 0.054 0.946 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.075 0.925 40 H 0.069 0.931 41 H 0.057 0.943 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.177 0.823 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -9.128 17.712 4.053 20.334 hybrid contribution 0.916 0.199 -0.681 1.159 sum -8.212 17.911 3.372 19.990 Atomic orbital electron populations 1.22747 0.80960 1.03078 0.99715 1.88073 1.19719 1.26211 1.95394 1.22875 0.92509 0.86247 1.01902 1.22199 0.94002 1.00086 0.84664 1.47086 1.52510 1.04876 1.12153 1.73194 1.01703 0.93925 1.26021 1.22115 1.08734 0.97312 0.90162 1.17067 0.79125 0.83327 0.84750 1.90790 1.49385 1.66224 1.34053 1.48313 1.66743 1.10554 1.04556 1.19404 0.97013 0.72131 0.98747 1.21452 0.92607 0.92125 1.49993 0.92264 1.24920 0.97859 0.96086 0.95173 1.69940 1.33693 0.99370 1.50394 0.86455 0.85100 0.78327 0.77615 1.19811 1.21027 1.20901 1.21062 0.94707 0.92850 0.87715 1.22593 0.98821 0.97856 1.01401 1.22360 0.94787 0.99667 1.01684 1.22237 0.89407 0.93538 0.98464 1.22490 1.07947 0.95661 0.98858 1.18106 0.80674 0.87921 0.85058 1.90916 1.52655 1.13976 1.84751 0.94030 0.94344 0.89313 0.91004 0.92210 0.86540 0.86536 0.94566 0.93702 0.92786 0.89227 0.92206 0.92485 0.93069 0.94343 0.91447 0.92219 0.82293 0.82051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.37 16 2 O -0.38 -3.89 7.72 -35.23 -0.27 -4.16 16 3 C 0.04 0.37 6.20 37.16 0.23 0.60 16 4 C 0.11 1.03 5.14 -4.04 -0.02 1.00 16 5 N -0.34 -4.33 3.18 -63.33 -0.20 -4.53 16 6 N -0.12 -1.65 1.78 33.41 0.06 -1.59 16 7 C -0.02 -0.27 4.81 -82.83 -0.40 -0.66 16 8 C 0.57 11.88 6.84 -12.31 -0.08 11.79 16 9 O -0.53 -12.79 16.02 5.32 0.09 -12.70 16 10 N -0.57 -11.98 2.40 -168.56 -0.41 -12.38 16 11 C 0.25 6.26 5.08 -5.19 -0.03 6.23 16 12 C -0.52 -14.49 9.39 -34.44 -0.32 -14.81 16 13 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 14 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 15 N -0.89 -26.11 13.29 55.43 0.74 -25.38 16 16 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 17 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 20 C 0.14 2.36 3.26 -67.93 -0.22 2.14 16 21 C -0.15 -2.19 8.06 37.16 0.30 -1.89 16 22 C -0.13 -1.81 6.78 37.15 0.25 -1.56 16 23 C -0.01 -0.18 9.67 -39.00 -0.38 -0.56 16 24 C -0.22 -2.80 10.11 -39.12 -0.40 -3.19 16 25 C 0.48 6.68 7.34 -15.18 -0.11 6.57 16 26 O -0.54 -8.43 16.54 4.94 0.08 -8.35 16 27 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 32 H 0.12 0.94 5.00 -51.93 -0.26 0.68 16 33 H 0.12 0.94 7.62 -51.93 -0.40 0.54 16 34 H 0.04 0.93 7.99 -51.93 -0.41 0.52 16 35 H 0.04 1.28 7.48 -51.93 -0.39 0.89 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.09 1.54 7.87 -51.93 -0.41 1.13 16 38 H 0.06 0.97 4.41 -52.26 -0.23 0.74 16 39 H 0.06 0.67 4.92 -51.93 -0.26 0.41 16 40 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.82 3.65 -51.92 -0.19 0.63 16 43 H 0.06 0.95 5.34 -51.93 -0.28 0.67 16 44 H 0.16 2.07 7.73 -52.48 -0.41 1.67 16 45 H 0.16 1.68 8.06 -52.49 -0.42 1.25 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -33.51 353.84 -5.90 -39.42 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -6.14 Total: -0.89 kcal Atomic # 6 Polarization: 8.81 SS G_CDS: -0.16 Total: 8.65 kcal Atomic # 7 Polarization: -44.07 SS G_CDS: 0.19 Total: -43.88 kcal Atomic # 8 Polarization: -25.11 SS G_CDS: -0.10 Total: -25.21 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -33.51 -5.90 -39.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647078981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.722 kcal (2) G-P(sol) polarization free energy of solvation -33.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds