Wall clock time and date at job start Tue Mar 31 2020 13:37:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42902 * 113.99900 * 2 1 4 4 C 1.53002 * 109.47011 * 180.02562 * 3 2 1 5 5 N 1.46493 * 109.47256 * 64.29738 * 4 3 2 6 6 N 1.28391 * 119.10095 * 262.33113 * 5 4 3 7 7 C 1.31404 * 122.26310 * 180.27862 * 6 5 4 8 8 C 1.47885 * 119.89116 * 179.74195 * 7 6 5 9 9 O 1.21554 * 120.00482 * 174.13294 * 8 7 6 10 10 N 1.34776 * 120.00202 * 354.13192 * 8 7 6 11 11 C 1.46505 * 120.00412 * 176.03505 * 10 8 7 12 12 C 1.50699 * 109.46819 * 90.00019 * 11 10 8 13 13 H 1.07994 * 120.00266 * 0.02562 * 12 11 10 14 14 C 1.37883 * 119.99663 * 180.02562 * 12 11 10 15 15 N 1.31516 * 119.99825 * 359.97438 * 14 12 11 16 16 Si 1.86802 * 119.99699 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47117 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46783 * 119.99936 * 16 14 12 19 19 H 1.48499 * 109.46811 * 239.99615 * 16 14 12 20 20 C 1.46507 * 119.99649 * 356.03594 * 10 8 7 21 21 C 1.52998 * 109.46868 * 307.66405 * 20 10 8 22 22 C 1.52994 * 109.46958 * 67.66542 * 20 10 8 23 23 C 1.41573 * 120.21609 * 359.46405 * 7 6 5 24 24 C 1.36332 * 118.23946 * 0.25695 * 23 7 6 25 25 C 1.34614 * 119.10159 * 82.07386 * 5 4 3 26 26 O 1.21975 * 120.22587 * 0.02562 * 25 5 4 27 27 H 1.08996 * 109.47224 * 300.00004 * 1 2 3 28 28 H 1.09004 * 109.47221 * 59.99613 * 1 2 3 29 29 H 1.09002 * 109.47235 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47531 * 60.00044 * 3 2 1 31 31 H 1.08999 * 109.47116 * 300.00032 * 3 2 1 32 32 H 1.09001 * 109.47184 * 304.29315 * 4 3 2 33 33 H 1.09005 * 109.46789 * 184.29485 * 4 3 2 34 34 H 1.09000 * 109.47154 * 209.99921 * 11 10 8 35 35 H 1.08997 * 109.46693 * 330.00017 * 11 10 8 36 36 H 0.96995 * 119.99433 * 179.97438 * 15 14 12 37 37 H 1.09005 * 109.47007 * 187.66398 * 20 10 8 38 38 H 1.08993 * 109.47239 * 28.99088 * 21 20 10 39 39 H 1.09000 * 109.46815 * 148.99545 * 21 20 10 40 40 H 1.08996 * 109.47055 * 268.98573 * 21 20 10 41 41 H 1.09001 * 109.47496 * 91.20157 * 22 20 10 42 42 H 1.09009 * 109.47044 * 211.20285 * 22 20 10 43 43 H 1.09006 * 109.47542 * 331.20184 * 22 20 10 44 44 H 1.08007 * 120.88435 * 180.28136 * 23 7 6 45 45 H 1.07994 * 121.03111 * 180.02562 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 3.9744 0.5492 -1.2454 6 7 4.2251 -0.7100 -1.2491 7 6 4.6275 -1.3420 -2.3286 8 6 4.9069 -2.7931 -2.2720 9 8 5.1756 -3.4005 -3.2900 10 7 4.8636 -3.4422 -1.0917 11 6 5.0544 -4.8941 -1.0466 12 6 6.5194 -5.2031 -0.8759 13 1 7.2366 -4.3985 -0.8075 14 6 6.9443 -6.5130 -0.8072 15 7 6.0708 -7.4927 -0.8901 16 14 8.7604 -6.8960 -0.5965 17 1 9.5293 -5.6274 -0.5293 18 1 8.9619 -7.6634 0.6588 19 1 9.2335 -7.7018 -1.7506 20 6 4.6256 -2.6959 0.1464 21 6 5.6178 -1.5350 0.2407 22 6 3.1974 -2.1473 0.1447 23 6 4.7889 -0.6394 -3.5470 24 6 4.5217 0.6974 -3.5611 25 6 4.0990 1.3004 -2.3555 26 8 3.8491 2.4938 -2.3206 27 1 -0.3633 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.6886 1.8465 0.8900 31 1 1.6886 1.8464 -0.8900 32 1 3.8523 0.5786 0.8481 33 1 3.9785 2.1776 0.0763 34 1 4.4956 -5.3081 -0.2073 35 1 4.6955 -5.3367 -1.9757 36 1 6.3697 -8.4142 -0.8422 37 1 4.7593 -3.3585 1.0015 38 1 5.8921 -1.2091 -0.7626 39 1 5.1573 -0.7064 0.7787 40 1 6.5106 -1.8625 0.7733 41 1 2.5308 -2.8680 0.6184 42 1 3.1683 -1.2079 0.6969 43 1 2.8754 -1.9752 -0.8824 44 1 5.1148 -1.1489 -4.4418 45 1 4.6293 1.2772 -4.4658 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647078981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:57 Heat of formation + Delta-G solvation = 5.055567 kcal Electronic energy + Delta-G solvation = -29681.996407 eV Core-core repulsion = 25703.988039 eV Total energy + Delta-G solvation = -3978.008368 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.59160 -40.96850 -38.95459 -38.81021 -37.57713 -36.00347 -35.13168 -33.11365 -32.40300 -31.13564 -29.15936 -28.14283 -27.50189 -26.49917 -25.72882 -24.83106 -23.96378 -22.78555 -20.83662 -19.43195 -18.67368 -18.54085 -18.05161 -17.65903 -17.46370 -17.22361 -17.01440 -16.41871 -16.18092 -16.00950 -15.67612 -15.43434 -15.11690 -14.95803 -14.48065 -14.28630 -14.19550 -13.87784 -13.61767 -13.56029 -13.32309 -13.12148 -12.93301 -12.72250 -12.60462 -12.38825 -12.34355 -12.14263 -12.02319 -11.91132 -11.58351 -11.55890 -11.38881 -10.87975 -10.67453 -10.60444 -10.50510 -9.54232 -9.36192 -8.18406 -6.32009 -0.55097 0.06564 1.03513 1.39641 1.41862 1.53485 1.80958 2.16180 2.42341 2.51029 2.72691 2.92430 3.11743 3.53554 3.65082 3.75686 3.87563 3.97039 4.06936 4.30851 4.36888 4.40579 4.44757 4.46740 4.55763 4.57408 4.63656 4.74949 4.79072 4.84550 4.90379 4.95373 5.00485 5.08624 5.15047 5.21029 5.22915 5.38414 5.58582 5.65648 5.88748 6.09241 6.16701 6.40681 6.66320 6.77200 6.84503 7.23873 7.41225 8.88961 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.017899 B = 0.004096 C = 0.003740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.972083 B = 6835.032696 C = 7484.576113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.399 6.399 3 C 0.044 3.956 4 C 0.098 3.902 5 N -0.334 5.334 6 N -0.098 5.098 7 C -0.034 4.034 8 C 0.570 3.430 9 O -0.577 6.577 10 N -0.579 5.579 11 C 0.262 3.738 12 C -0.537 4.537 13 H 0.053 0.947 14 C 0.011 3.989 15 N -0.927 5.927 16 Si 0.965 3.035 17 H -0.268 1.268 18 H -0.270 1.270 19 H -0.282 1.282 20 C 0.134 3.866 21 C -0.142 4.142 22 C -0.112 4.112 23 C -0.018 4.018 24 C -0.207 4.207 25 C 0.477 3.523 26 O -0.556 6.556 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.085 0.915 30 H 0.106 0.894 31 H 0.045 0.955 32 H 0.134 0.866 33 H 0.135 0.865 34 H 0.028 0.972 35 H 0.004 0.996 36 H 0.267 0.733 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.095 0.905 43 H 0.045 0.955 44 H 0.163 0.837 45 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.830 20.331 5.223 22.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.319 6.319 3 C -0.033 4.033 4 C -0.020 4.020 5 N -0.157 5.157 6 N 0.068 4.932 7 C -0.199 4.199 8 C 0.356 3.644 9 O -0.455 6.455 10 N -0.308 5.308 11 C 0.141 3.859 12 C -0.575 4.575 13 H 0.071 0.929 14 C -0.188 4.188 15 N -0.567 5.567 16 Si 0.790 3.210 17 H -0.193 1.193 18 H -0.196 1.196 19 H -0.208 1.208 20 C 0.031 3.969 21 C -0.200 4.200 22 C -0.170 4.170 23 C -0.042 4.042 24 C -0.236 4.236 25 C 0.278 3.722 26 O -0.437 6.437 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.104 0.896 30 H 0.124 0.876 31 H 0.064 0.936 32 H 0.152 0.848 33 H 0.153 0.847 34 H 0.046 0.954 35 H 0.022 0.978 36 H 0.076 0.924 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.113 0.887 43 H 0.063 0.937 44 H 0.180 0.820 45 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -8.954 20.218 5.622 22.816 hybrid contribution 0.750 -0.484 -1.098 1.415 sum -8.204 19.734 4.524 21.845 Atomic orbital electron populations 1.22832 0.79929 1.03277 1.00668 1.88009 1.20955 1.27299 1.95588 1.22943 0.91743 0.85812 1.02844 1.22667 0.94776 1.01088 0.83443 1.47387 1.51007 1.04058 1.13240 1.73092 1.00383 0.94598 1.25113 1.21361 1.11575 0.95049 0.91920 1.17572 0.77902 0.85155 0.83765 1.90744 1.51382 1.67939 1.35475 1.48297 1.66956 1.09116 1.06480 1.18874 0.95865 0.75100 0.96086 1.21675 0.93455 0.92297 1.50089 0.92880 1.25785 1.02469 0.95890 0.94670 1.70050 1.35829 0.99835 1.51008 0.85408 0.79478 0.78233 0.77928 1.19270 1.19571 1.20775 1.21361 0.96913 0.93103 0.85549 1.22546 0.98333 0.97999 1.01122 1.22240 0.92830 1.00770 1.01134 1.22189 0.90207 0.93995 0.97770 1.22725 1.06387 0.94974 0.99536 1.18276 0.80527 0.87790 0.85578 1.90918 1.53232 1.14480 1.85067 0.91975 0.94460 0.89599 0.87632 0.93634 0.84840 0.84692 0.95405 0.97815 0.92436 0.89909 0.93368 0.88887 0.93554 0.94385 0.88678 0.93655 0.81988 0.79585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.40 -7.20 7.72 -148.98 -1.15 -8.35 16 3 C 0.04 0.62 6.20 71.98 0.45 1.06 16 4 C 0.10 1.46 5.14 86.38 0.44 1.90 16 5 N -0.33 -7.53 3.18 -472.48 -1.50 -9.04 16 6 N -0.10 -2.61 1.78 -48.20 -0.09 -2.70 16 7 C -0.03 -1.11 4.81 42.59 0.20 -0.90 16 8 C 0.57 24.49 6.84 86.80 0.59 25.08 16 9 O -0.58 -29.45 16.02 -3.89 -0.06 -29.51 16 10 N -0.58 -25.13 2.40 -805.46 -1.94 -27.06 16 11 C 0.26 14.03 5.08 85.63 0.43 14.46 16 12 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 13 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 14 C 0.01 0.62 5.46 84.66 0.46 1.08 16 15 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 16 Si 0.96 44.67 29.54 68.60 2.03 46.70 16 17 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 18 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 19 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 20 C 0.13 4.42 3.26 44.99 0.15 4.57 16 21 C -0.14 -3.96 8.06 71.98 0.58 -3.38 16 22 C -0.11 -3.05 6.78 71.98 0.49 -2.56 16 23 C -0.02 -0.50 9.67 22.65 0.22 -0.28 16 24 C -0.21 -4.87 10.11 22.57 0.23 -4.64 16 25 C 0.48 12.06 7.34 85.01 0.62 12.69 16 26 O -0.56 -15.74 16.54 -5.24 -0.09 -15.83 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.04 0.51 8.14 -2.38 -0.02 0.50 16 29 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.05 0.79 7.89 -2.39 -0.02 0.77 16 32 H 0.13 1.52 5.00 -2.39 -0.01 1.51 16 33 H 0.14 1.60 7.62 -2.38 -0.02 1.58 16 34 H 0.03 1.51 7.99 -2.39 -0.02 1.49 16 35 H 0.00 0.23 7.48 -2.39 -0.02 0.21 16 36 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 37 H 0.08 2.84 7.87 -2.38 -0.02 2.82 16 38 H 0.05 1.50 4.41 -2.82 -0.01 1.48 16 39 H 0.09 1.86 4.92 -2.39 -0.01 1.85 16 40 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.09 2.03 3.65 -2.38 -0.01 2.02 16 43 H 0.04 1.41 5.34 -2.38 -0.01 1.39 16 44 H 0.16 4.29 7.73 -2.91 -0.02 4.27 16 45 H 0.19 3.38 8.06 -2.91 -0.02 3.36 16 Total: -1.00 -74.97 353.84 4.86 -70.10 By element: Atomic # 1 Polarization: 9.50 SS G_CDS: 1.01 Total: 10.51 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.36 Total: 20.32 kcal Atomic # 7 Polarization: -90.71 SS G_CDS: -3.24 Total: -93.95 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -1.30 Total: -53.68 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -74.97 4.86 -70.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647078981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.159 kcal (2) G-P(sol) polarization free energy of solvation -74.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds