Wall clock time and date at job start Tue Mar 31 2020 14:17:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00021 * 2 1 4 4 C 1.53004 * 109.47560 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46851 * 65.00040 * 4 3 2 6 6 C 1.35974 * 119.61247 * 90.00327 * 5 4 3 7 7 C 1.35861 * 120.59627 * 180.02562 * 6 5 4 8 8 N 1.40453 * 120.08369 * 179.97438 * 7 6 5 9 9 C 1.34772 * 119.99884 * 122.42182 * 8 7 6 10 10 O 1.21602 * 120.00035 * 4.66870 * 9 8 7 11 11 N 1.34777 * 120.00471 * 184.66556 * 9 8 7 12 12 C 1.46507 * 119.99371 * 0.02562 * 11 9 8 13 13 C 1.46494 * 120.00439 * 179.97438 * 11 9 8 14 14 H 1.09001 * 109.47045 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47176 * 240.00155 * 13 11 9 16 16 C 1.50702 * 109.46847 * 120.00299 * 13 11 9 17 17 H 1.08000 * 120.00186 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99509 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00581 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99667 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47181 * 60.00202 * 20 18 16 22 22 H 1.48502 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46932 * 299.99929 * 20 18 16 24 24 C 1.40617 * 119.83322 * 359.97438 * 7 6 5 25 25 C 1.36364 * 119.24435 * 359.97438 * 24 7 6 26 26 C 1.34638 * 119.61293 * 270.02341 * 5 4 3 27 27 O 1.22104 * 119.92171 * 0.02562 * 26 5 4 28 28 H 1.08998 * 109.47281 * 60.00386 * 1 2 3 29 29 H 1.09005 * 109.46680 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46940 * 299.99730 * 1 2 3 31 31 H 1.08999 * 109.47194 * 59.99827 * 3 2 1 32 32 H 1.09006 * 109.47591 * 300.00144 * 3 2 1 33 33 H 1.09000 * 109.47074 * 305.00247 * 4 3 2 34 34 H 1.08994 * 109.47278 * 184.99903 * 4 3 2 35 35 H 1.07998 * 119.69977 * 0.02562 * 6 5 4 36 36 H 0.96999 * 119.99798 * 302.42062 * 8 7 6 37 37 H 1.08995 * 109.46945 * 89.99807 * 12 11 9 38 38 H 1.09004 * 109.46906 * 209.99740 * 12 11 9 39 39 H 1.08994 * 109.47089 * 329.99688 * 12 11 9 40 40 H 1.09001 * 109.47477 * 300.00094 * 15 13 11 41 41 H 1.09005 * 109.47445 * 59.99878 * 15 13 11 42 42 H 1.08996 * 109.47657 * 180.02562 * 15 13 11 43 43 H 0.96999 * 120.00390 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.38000 * 179.72192 * 24 7 6 45 45 H 1.07995 * 120.30080 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2619 1.3482 -2.3264 7 6 4.6713 0.7942 -3.4974 8 7 4.9636 1.6139 -4.5999 9 6 6.1835 1.5656 -5.1707 10 8 7.0028 0.7533 -4.7867 11 7 6.4954 2.4177 -6.1673 12 6 5.5084 3.3967 -6.6297 13 6 7.8216 2.3656 -6.7875 14 1 8.4132 1.5817 -6.3147 15 6 8.5229 3.7131 -6.6055 16 6 7.6771 2.0691 -8.2580 17 1 6.6956 1.9334 -8.6876 18 6 8.7981 1.9720 -9.0549 19 7 9.9932 2.1377 -8.5318 20 14 8.6191 1.6051 -10.8778 21 1 7.8130 2.6737 -11.5210 22 1 9.9634 1.5523 -11.5064 23 1 7.9385 0.2971 -11.0550 24 6 4.8015 -0.6020 -3.6030 25 6 4.5137 -1.3815 -2.5218 26 6 4.0916 -0.7748 -1.3270 27 8 3.8297 -1.4637 -0.3535 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 4.1630 2.4208 -2.2475 36 1 4.2875 2.2146 -4.9503 37 1 5.6132 4.3172 -6.0555 38 1 5.6728 3.6070 -7.6866 39 1 4.5050 2.9943 -6.4911 40 1 7.9315 4.4974 -7.0779 41 1 8.6274 3.9277 -5.5419 42 1 9.5095 3.6746 -7.0672 43 1 10.7818 2.0691 -9.0924 44 1 5.1219 -1.0520 -4.5310 45 1 4.6075 -2.4556 -2.5840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647109004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:28 Heat of formation + Delta-G solvation = -51.832814 kcal Electronic energy + Delta-G solvation = -27655.977043 eV Core-core repulsion = 23675.501810 eV Total energy + Delta-G solvation = -3980.475233 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37429 -39.65008 -38.08787 -36.96015 -35.65860 -34.88381 -33.57775 -32.56866 -30.41438 -29.60446 -28.14489 -26.68277 -26.15902 -25.23375 -24.50493 -23.41442 -22.43623 -21.10249 -19.30634 -18.22352 -17.61296 -17.14379 -16.66827 -16.63660 -16.32021 -16.15705 -15.87316 -15.28112 -14.91781 -14.68182 -14.47788 -14.18714 -14.08618 -13.20382 -13.15658 -12.95225 -12.75873 -12.67675 -12.54722 -12.26331 -12.15401 -11.75065 -11.64465 -11.53880 -11.37618 -11.07225 -10.87368 -10.71141 -10.29676 -10.18651 -10.12413 -10.01853 -9.76290 -9.46342 -9.24697 -9.14238 -8.44584 -7.75569 -7.51574 -6.08740 -4.16939 0.88501 1.92548 2.48488 3.26403 3.27301 3.32353 3.35733 3.40818 3.70272 3.87765 4.33629 4.45838 4.51207 4.58643 4.65704 4.78262 4.91187 5.00844 5.04579 5.08958 5.11313 5.22527 5.32505 5.40503 5.46443 5.56019 5.88415 5.92064 6.07101 6.20742 6.27651 6.45389 6.67436 6.78121 6.83154 6.94291 6.99944 7.11299 7.16228 7.45200 7.66351 7.80189 8.05257 8.18073 8.19755 8.62972 8.84053 9.22370 9.50280 10.96456 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025930 B = 0.002585 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.590793 B =10830.040823 C =11020.459662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.370 6.370 3 C 0.044 3.956 4 C 0.096 3.904 5 N -0.489 5.489 6 C 0.098 3.902 7 C 0.076 3.924 8 N -0.696 5.696 9 C 0.699 3.301 10 O -0.582 6.582 11 N -0.605 5.605 12 C 0.086 3.914 13 C 0.273 3.727 14 H 0.065 0.935 15 C -0.146 4.146 16 C -0.527 4.527 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.899 3.101 21 H -0.277 1.277 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.001 3.999 25 C -0.236 4.236 26 C 0.519 3.481 27 O -0.542 6.542 28 H 0.038 0.962 29 H 0.086 0.914 30 H 0.039 0.961 31 H 0.065 0.935 32 H 0.053 0.947 33 H 0.109 0.891 34 H 0.105 0.895 35 H 0.159 0.841 36 H 0.400 0.600 37 H 0.042 0.958 38 H 0.084 0.916 39 H 0.046 0.954 40 H 0.029 0.971 41 H 0.011 0.989 42 H 0.094 0.906 43 H 0.264 0.736 44 H 0.138 0.862 45 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.692 4.101 13.376 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.288 6.288 3 C -0.034 4.034 4 C -0.026 4.026 5 N -0.202 5.202 6 C -0.030 4.030 7 C -0.023 4.023 8 N -0.352 5.352 9 C 0.400 3.600 10 O -0.458 6.458 11 N -0.340 5.340 12 C -0.059 4.059 13 C 0.173 3.827 14 H 0.083 0.917 15 C -0.205 4.205 16 C -0.566 4.566 17 H 0.077 0.923 18 C -0.137 4.137 19 N -0.525 5.525 20 Si 0.726 3.274 21 H -0.203 1.203 22 H -0.212 1.212 23 H -0.203 1.203 24 C -0.022 4.022 25 C -0.258 4.258 26 C 0.320 3.680 27 O -0.424 6.424 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.058 0.942 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.128 0.872 34 H 0.123 0.877 35 H 0.177 0.823 36 H 0.237 0.763 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.065 0.935 40 H 0.048 0.952 41 H 0.030 0.970 42 H 0.112 0.888 43 H 0.074 0.926 44 H 0.156 0.844 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -16.875 2.947 14.202 22.252 hybrid contribution -0.656 0.617 -1.463 1.718 sum -17.531 3.564 12.739 21.962 Atomic orbital electron populations 1.22744 0.81302 1.02927 0.99575 1.88145 1.19263 1.26158 1.95253 1.22926 0.93287 0.86215 1.00933 1.21987 0.93430 0.99977 0.87239 1.45191 1.55546 1.08122 1.11335 1.21668 0.99071 0.96819 0.85474 1.16422 1.08367 0.89900 0.87600 1.42634 1.14428 1.45575 1.32565 1.16000 0.81262 0.82311 0.80378 1.90911 1.48722 1.40199 1.66012 1.47578 1.17124 1.34261 1.35002 1.21529 0.90436 0.91752 1.02163 1.18878 0.76368 0.95310 0.92167 0.91734 1.22100 1.03789 0.97686 0.96913 1.21288 0.93068 1.49403 0.92864 0.92314 1.24882 0.95108 0.94960 0.98779 1.69862 0.97641 1.49118 1.35884 0.86556 0.77233 0.78889 0.84684 1.20280 1.21179 1.20251 1.21628 0.89014 0.92302 0.99273 1.22010 1.09573 1.01564 0.92657 1.17039 0.80157 0.80428 0.90365 1.90952 1.52470 1.60469 1.38477 0.94308 0.89553 0.94204 0.91702 0.92903 0.87245 0.87659 0.82340 0.76267 0.93935 0.89753 0.93540 0.95222 0.97022 0.88789 0.92585 0.84415 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.37 -4.21 9.44 -44.04 -0.42 -4.63 16 3 C 0.04 0.34 6.28 37.16 0.23 0.58 16 4 C 0.10 0.82 5.80 -4.04 -0.02 0.80 16 5 N -0.49 -5.76 2.57 -119.58 -0.31 -6.07 16 6 C 0.10 1.05 10.20 -16.57 -0.17 0.88 16 7 C 0.08 1.04 5.77 -83.86 -0.48 0.55 16 8 N -0.70 -9.90 5.17 -14.37 -0.07 -9.98 16 9 C 0.70 13.84 8.14 -86.92 -0.71 13.13 16 10 O -0.58 -14.09 14.78 5.28 0.08 -14.01 16 11 N -0.60 -12.18 2.75 -181.01 -0.50 -12.68 16 12 C 0.09 1.29 9.24 59.85 0.55 1.84 16 13 C 0.27 6.76 2.64 -69.09 -0.18 6.57 16 14 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 15 C -0.15 -3.39 8.97 37.16 0.33 -3.06 16 16 C -0.53 -13.81 7.99 -34.44 -0.28 -14.08 16 17 H 0.06 1.50 7.33 -52.49 -0.38 1.12 16 18 C 0.07 1.74 5.30 -17.82 -0.09 1.65 16 19 N -0.89 -24.67 11.32 55.43 0.63 -24.04 16 20 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 22 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 23 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 24 C 0.00 0.01 8.91 -39.36 -0.35 -0.34 16 25 C -0.24 -3.46 9.98 -39.41 -0.39 -3.85 16 26 C 0.52 7.92 7.02 -15.47 -0.11 7.81 16 27 O -0.54 -9.82 15.81 -3.98 -0.06 -9.88 16 28 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.11 1.11 7.38 -51.93 -0.38 0.73 16 34 H 0.11 0.52 8.01 -51.93 -0.42 0.11 16 35 H 0.16 1.12 8.04 -52.49 -0.42 0.69 16 36 H 0.40 4.34 6.52 -40.82 -0.27 4.07 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.08 1.39 7.02 -51.93 -0.36 1.02 16 39 H 0.05 0.53 6.30 -51.93 -0.33 0.21 16 40 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 41 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 42 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 43 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 44 H 0.14 2.16 7.93 -52.49 -0.42 1.74 16 45 H 0.15 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 372.49 15.07 5.61 5.61 Total: -1.00 -35.48 372.49 -7.19 -42.67 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.57 Total: 3.58 kcal Atomic # 6 Polarization: 14.39 SS G_CDS: -0.56 Total: 13.83 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -0.25 Total: -52.77 kcal Atomic # 8 Polarization: -28.12 SS G_CDS: -0.40 Total: -28.52 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.48 -7.19 -42.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647109004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.163 kcal (2) G-P(sol) polarization free energy of solvation -35.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds