Wall clock time and date at job start Tue Mar 31 2020 14:17:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 114.00021 * 2 1 4 4 C 1.53004 * 109.47560 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.46851 * 65.00040 * 4 3 2 6 6 C 1.35974 * 119.61247 * 90.00327 * 5 4 3 7 7 C 1.35861 * 120.59627 * 180.02562 * 6 5 4 8 8 N 1.40453 * 120.08369 * 179.97438 * 7 6 5 9 9 C 1.34772 * 119.99884 * 122.42182 * 8 7 6 10 10 O 1.21602 * 120.00035 * 4.66870 * 9 8 7 11 11 N 1.34777 * 120.00471 * 184.66556 * 9 8 7 12 12 C 1.46507 * 119.99371 * 0.02562 * 11 9 8 13 13 C 1.46494 * 120.00439 * 179.97438 * 11 9 8 14 14 H 1.09001 * 109.47045 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47176 * 240.00155 * 13 11 9 16 16 C 1.50702 * 109.46847 * 120.00299 * 13 11 9 17 17 H 1.08000 * 120.00186 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99509 * 179.97438 * 16 13 11 19 19 N 1.31510 * 120.00581 * 0.02562 * 18 16 13 20 20 Si 1.86806 * 119.99667 * 180.02562 * 18 16 13 21 21 H 1.48497 * 109.47181 * 60.00202 * 20 18 16 22 22 H 1.48502 * 109.47129 * 180.02562 * 20 18 16 23 23 H 1.48507 * 109.46932 * 299.99929 * 20 18 16 24 24 C 1.40617 * 119.83322 * 359.97438 * 7 6 5 25 25 C 1.36364 * 119.24435 * 359.97438 * 24 7 6 26 26 C 1.34638 * 119.61293 * 270.02341 * 5 4 3 27 27 O 1.22104 * 119.92171 * 0.02562 * 26 5 4 28 28 H 1.08998 * 109.47281 * 60.00386 * 1 2 3 29 29 H 1.09005 * 109.46680 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46940 * 299.99730 * 1 2 3 31 31 H 1.08999 * 109.47194 * 59.99827 * 3 2 1 32 32 H 1.09006 * 109.47591 * 300.00144 * 3 2 1 33 33 H 1.09000 * 109.47074 * 305.00247 * 4 3 2 34 34 H 1.08994 * 109.47278 * 184.99903 * 4 3 2 35 35 H 1.07998 * 119.69977 * 0.02562 * 6 5 4 36 36 H 0.96999 * 119.99798 * 302.42062 * 8 7 6 37 37 H 1.08995 * 109.46945 * 89.99807 * 12 11 9 38 38 H 1.09004 * 109.46906 * 209.99740 * 12 11 9 39 39 H 1.08994 * 109.47089 * 329.99688 * 12 11 9 40 40 H 1.09001 * 109.47477 * 300.00094 * 15 13 11 41 41 H 1.09005 * 109.47445 * 59.99878 * 15 13 11 42 42 H 1.08996 * 109.47657 * 180.02562 * 15 13 11 43 43 H 0.96999 * 120.00390 * 179.97438 * 19 18 16 44 44 H 1.07998 * 120.38000 * 179.72192 * 24 7 6 45 45 H 1.07995 * 120.30080 * 179.97438 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 7 3.9757 0.5645 -1.2527 6 6 4.2619 1.3482 -2.3264 7 6 4.6713 0.7942 -3.4974 8 7 4.9636 1.6139 -4.5999 9 6 6.1835 1.5656 -5.1707 10 8 7.0028 0.7533 -4.7867 11 7 6.4954 2.4177 -6.1673 12 6 5.5084 3.3967 -6.6297 13 6 7.8216 2.3656 -6.7875 14 1 8.4132 1.5817 -6.3147 15 6 8.5229 3.7131 -6.6055 16 6 7.6771 2.0691 -8.2580 17 1 6.6956 1.9334 -8.6876 18 6 8.7981 1.9720 -9.0549 19 7 9.9932 2.1377 -8.5318 20 14 8.6191 1.6051 -10.8778 21 1 7.8130 2.6737 -11.5210 22 1 9.9634 1.5523 -11.5064 23 1 7.9385 0.2971 -11.0550 24 6 4.8015 -0.6020 -3.6030 25 6 4.5137 -1.3815 -2.5218 26 6 4.0916 -0.7748 -1.3270 27 8 3.8297 -1.4637 -0.3535 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.6886 1.8463 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8515 0.5682 0.8409 34 1 3.9785 2.1765 0.0889 35 1 4.1630 2.4208 -2.2475 36 1 4.2875 2.2146 -4.9503 37 1 5.6132 4.3172 -6.0555 38 1 5.6728 3.6070 -7.6866 39 1 4.5050 2.9943 -6.4911 40 1 7.9315 4.4974 -7.0779 41 1 8.6274 3.9277 -5.5419 42 1 9.5095 3.6746 -7.0672 43 1 10.7818 2.0691 -9.0924 44 1 5.1219 -1.0520 -4.5310 45 1 4.6075 -2.4556 -2.5840 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647109004.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:27 Heat of formation + Delta-G solvation = -76.439487 kcal Electronic energy + Delta-G solvation = -27657.044069 eV Core-core repulsion = 23675.501810 eV Total energy + Delta-G solvation = -3981.542258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.44806 -41.08516 -38.79338 -38.23479 -37.12797 -36.18370 -35.04620 -34.17868 -31.37473 -31.13085 -29.34386 -27.51789 -27.30821 -27.24030 -25.43406 -24.52604 -23.57250 -22.48788 -20.79257 -19.49019 -18.71777 -18.41524 -18.17931 -17.67121 -17.37602 -17.13432 -16.99548 -16.64364 -16.18222 -15.99328 -15.79265 -15.35658 -15.11794 -14.86841 -14.38249 -14.19181 -13.95743 -13.67135 -13.54472 -13.45659 -13.30850 -13.05074 -12.85655 -12.84674 -12.70752 -12.65281 -12.48813 -12.13774 -12.09402 -12.07891 -11.19851 -11.16078 -11.05698 -10.96816 -10.60562 -10.49835 -10.46150 -9.27874 -8.70276 -8.09886 -6.26116 -0.15094 0.76611 1.44170 1.45990 1.48755 1.53901 2.01948 2.28356 2.45583 2.65846 2.90304 3.17782 3.18210 3.68636 3.81886 3.96442 3.99964 4.06486 4.27199 4.38490 4.42622 4.46844 4.49520 4.56831 4.70853 4.79013 4.80486 4.84154 4.85230 4.96901 5.05184 5.06853 5.13385 5.16855 5.39654 5.51119 5.58670 5.71688 5.79747 6.01741 6.06760 6.21897 6.28844 6.31593 6.82472 7.05651 7.20508 7.41785 7.76354 8.93671 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.025930 B = 0.002585 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.590793 B =10830.040823 C =11020.459662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.413 6.413 3 C 0.040 3.960 4 C 0.087 3.913 5 N -0.482 5.482 6 C 0.143 3.857 7 C 0.038 3.962 8 N -0.667 5.667 9 C 0.695 3.305 10 O -0.636 6.636 11 N -0.612 5.612 12 C 0.080 3.920 13 C 0.279 3.721 14 H 0.008 0.992 15 C -0.131 4.131 16 C -0.536 4.536 17 H 0.063 0.937 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.962 3.038 21 H -0.261 1.261 22 H -0.287 1.287 23 H -0.279 1.279 24 C 0.001 3.999 25 C -0.259 4.259 26 C 0.511 3.489 27 O -0.580 6.580 28 H 0.049 0.951 29 H 0.078 0.922 30 H 0.057 0.943 31 H 0.093 0.907 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.154 0.846 35 H 0.214 0.786 36 H 0.420 0.580 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.020 0.980 42 H 0.065 0.935 43 H 0.263 0.737 44 H 0.119 0.881 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.232 7.189 13.560 25.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.333 6.333 3 C -0.037 4.037 4 C -0.033 4.033 5 N -0.192 5.192 6 C 0.013 3.987 7 C -0.060 4.060 8 N -0.323 5.323 9 C 0.397 3.603 10 O -0.517 6.517 11 N -0.347 5.347 12 C -0.062 4.062 13 C 0.176 3.824 14 H 0.026 0.974 15 C -0.190 4.190 16 C -0.575 4.575 17 H 0.081 0.919 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.787 3.213 21 H -0.186 1.186 22 H -0.212 1.212 23 H -0.205 1.205 24 C -0.023 4.023 25 C -0.281 4.281 26 C 0.313 3.687 27 O -0.465 6.465 28 H 0.068 0.932 29 H 0.097 0.903 30 H 0.076 0.924 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.107 0.893 34 H 0.172 0.828 35 H 0.231 0.769 36 H 0.262 0.738 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.039 0.961 42 H 0.084 0.916 43 H 0.073 0.927 44 H 0.137 0.863 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -19.510 6.096 14.401 25.004 hybrid contribution 0.083 -0.311 -1.424 1.460 sum -19.427 5.785 12.977 24.068 Atomic orbital electron populations 1.22837 0.79987 1.03000 1.00946 1.88102 1.20981 1.28601 1.95599 1.23133 0.92135 0.85266 1.03154 1.22431 0.94711 1.01512 0.84657 1.45335 1.53712 1.07314 1.12812 1.22251 0.94192 0.98769 0.83450 1.16484 1.11430 0.89181 0.88918 1.42106 1.12689 1.45357 1.32188 1.16177 0.82309 0.81554 0.80307 1.90878 1.50945 1.42280 1.67584 1.47396 1.16621 1.35509 1.35132 1.21813 0.90938 0.91865 1.01609 1.18417 0.78434 0.94247 0.91301 0.97373 1.21869 1.02345 0.97387 0.97367 1.21584 0.93205 1.48976 0.93716 0.91933 1.25703 0.94844 0.94905 1.03019 1.70014 0.98282 1.50109 1.37276 0.85557 0.77177 0.78795 0.79738 1.18551 1.21235 1.20497 1.21570 0.88709 0.93552 0.98432 1.21963 1.11358 1.01728 0.93035 1.17072 0.80081 0.81747 0.89754 1.90925 1.54397 1.61688 1.39536 0.93218 0.90341 0.92410 0.88883 0.91067 0.89288 0.82838 0.76904 0.73845 0.91207 0.91160 0.89540 0.93296 0.96071 0.91609 0.92742 0.86331 0.83692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 113.37 1.25 1.65 16 2 O -0.41 -8.77 9.44 -140.56 -1.33 -10.10 16 3 C 0.04 0.47 6.28 71.98 0.45 0.93 16 4 C 0.09 1.19 5.80 86.38 0.50 1.69 16 5 N -0.48 -10.12 2.57 -650.36 -1.67 -11.79 16 6 C 0.14 2.49 10.20 83.50 0.85 3.34 16 7 C 0.04 0.96 5.77 37.79 0.22 1.17 16 8 N -0.67 -17.22 5.17 -317.63 -1.64 -18.86 16 9 C 0.69 27.05 8.14 179.06 1.46 28.51 16 10 O -0.64 -31.79 14.78 -4.04 -0.06 -31.85 16 11 N -0.61 -24.00 2.75 -844.84 -2.33 -26.33 16 12 C 0.08 2.14 9.24 127.77 1.18 3.32 16 13 C 0.28 14.00 2.64 44.25 0.12 14.12 16 14 H 0.01 0.51 6.90 -2.39 -0.02 0.49 16 15 C -0.13 -6.06 8.97 71.98 0.65 -5.42 16 16 C -0.54 -28.22 7.99 25.60 0.20 -28.02 16 17 H 0.06 3.16 7.33 -2.91 -0.02 3.14 16 18 C 0.01 0.80 5.30 84.66 0.45 1.25 16 19 N -0.92 -52.30 11.32 21.45 0.24 -52.05 16 20 Si 0.96 42.29 29.54 68.60 2.03 44.32 16 21 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 22 H -0.29 -12.53 7.11 99.48 0.71 -11.83 16 23 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 24 C 0.00 0.02 8.91 22.41 0.20 0.22 16 25 C -0.26 -7.93 9.98 22.38 0.22 -7.71 16 26 C 0.51 15.61 7.02 84.81 0.60 16.21 16 27 O -0.58 -21.63 15.81 2.77 0.04 -21.58 16 28 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.08 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.07 0.59 8.14 -2.38 -0.02 0.57 16 33 H 0.09 1.67 7.38 -2.39 -0.02 1.65 16 34 H 0.15 0.61 8.01 -2.39 -0.02 0.59 16 35 H 0.21 1.42 8.04 -2.91 -0.02 1.40 16 36 H 0.42 7.24 6.52 -92.71 -0.60 6.64 16 37 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.07 2.11 7.02 -2.39 -0.02 2.10 16 39 H 0.09 1.58 6.30 -2.39 -0.02 1.57 16 40 H 0.05 2.02 7.67 -2.39 -0.02 2.00 16 41 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 42 H 0.07 3.44 6.07 -2.39 -0.01 3.42 16 43 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 44 H 0.12 3.99 7.93 -2.91 -0.02 3.96 16 45 H 0.15 4.33 8.06 -2.91 -0.02 4.31 16 Total: -1.00 -83.90 372.49 4.03 -79.87 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: 0.40 Total: 17.12 kcal Atomic # 6 Polarization: 22.91 SS G_CDS: 8.34 Total: 31.25 kcal Atomic # 7 Polarization: -103.63 SS G_CDS: -5.40 Total: -109.03 kcal Atomic # 8 Polarization: -62.19 SS G_CDS: -1.34 Total: -63.53 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -83.90 4.03 -79.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647109004.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.432 kcal (2) G-P(sol) polarization free energy of solvation -83.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds