Wall clock time and date at job start Tue Mar 31 2020 14:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42899 * 114.00044 * 2 1 4 4 C 1.53004 * 109.47052 * 180.02562 * 3 2 1 5 5 N 1.46497 * 109.47240 * 65.00067 * 4 3 2 6 6 C 1.35977 * 119.60811 * 270.29450 * 5 4 3 7 7 C 1.35865 * 120.59368 * 180.26258 * 6 5 4 8 8 N 1.40440 * 120.08671 * 179.71537 * 7 6 5 9 9 C 1.34773 * 120.00377 * 237.50093 * 8 7 6 10 10 O 1.21595 * 120.00117 * 354.77059 * 9 8 7 11 11 N 1.34777 * 120.00455 * 174.77908 * 9 8 7 12 12 C 1.46505 * 119.99521 * 359.71666 * 11 9 8 13 13 C 1.46498 * 120.00247 * 179.97438 * 11 9 8 14 14 H 1.08998 * 109.47385 * 359.97438 * 13 11 9 15 15 C 1.52997 * 109.47204 * 119.99917 * 13 11 9 16 16 C 1.50708 * 109.46697 * 239.99293 * 13 11 9 17 17 H 1.07996 * 120.00507 * 0.02562 * 16 13 11 18 18 C 1.37877 * 119.99491 * 179.97438 * 16 13 11 19 19 N 1.31512 * 120.00203 * 0.02562 * 18 16 13 20 20 Si 1.86804 * 119.99724 * 180.02562 * 18 16 13 21 21 H 1.48501 * 109.47184 * 0.02562 * 20 18 16 22 22 H 1.48494 * 109.47292 * 120.00230 * 20 18 16 23 23 H 1.48504 * 109.46991 * 240.00392 * 20 18 16 24 24 C 1.40621 * 119.82929 * 359.44715 * 7 6 5 25 25 C 1.36354 * 119.24671 * 0.27112 * 24 7 6 26 26 C 1.34628 * 119.61222 * 90.00267 * 5 4 3 27 27 O 1.22101 * 119.92327 * 359.97438 * 26 5 4 28 28 H 1.09003 * 109.47303 * 60.00245 * 1 2 3 29 29 H 1.09007 * 109.47127 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47415 * 300.00154 * 1 2 3 31 31 H 1.08994 * 109.47392 * 59.99852 * 3 2 1 32 32 H 1.09003 * 109.47090 * 299.99767 * 3 2 1 33 33 H 1.08997 * 109.46994 * 304.99511 * 4 3 2 34 34 H 1.09005 * 109.46486 * 185.00065 * 4 3 2 35 35 H 1.07993 * 119.70193 * 0.02562 * 6 5 4 36 36 H 0.97007 * 119.99956 * 57.49391 * 8 7 6 37 37 H 1.09004 * 109.46601 * 90.00558 * 12 11 9 38 38 H 1.09004 * 109.47207 * 210.00374 * 12 11 9 39 39 H 1.08996 * 109.47223 * 330.00647 * 12 11 9 40 40 H 1.09003 * 109.47370 * 179.97438 * 15 13 11 41 41 H 1.09000 * 109.46957 * 299.99684 * 15 13 11 42 42 H 1.09004 * 109.47669 * 59.99786 * 15 13 11 43 43 H 0.96999 * 119.99620 * 180.02562 * 19 18 16 44 44 H 1.07997 * 120.37491 * 180.29478 * 24 7 6 45 45 H 1.07998 * 120.30434 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9756 0.5644 -1.2527 6 6 4.0873 -0.7886 -1.3293 7 6 4.4988 -1.3845 -2.4788 8 7 4.6161 -2.7825 -2.5443 9 6 5.7965 -3.3452 -2.8706 10 8 6.7336 -2.6443 -3.2008 11 7 5.9382 -4.6849 -2.8312 12 6 4.8109 -5.5292 -2.4275 13 6 7.2211 -5.2966 -3.1865 14 1 7.9340 -4.5166 -3.4536 15 6 7.7560 -6.0898 -1.9925 16 6 7.0280 -6.2233 -4.3592 17 1 6.0479 -6.3442 -4.7963 18 6 8.1030 -6.9160 -4.8746 19 7 9.2966 -6.7685 -4.3426 20 14 7.8639 -8.0641 -6.3286 21 1 6.4368 -8.0525 -6.7391 22 1 8.7083 -7.6096 -7.4624 23 1 8.2565 -9.4427 -5.9405 24 6 4.8016 -0.5983 -3.6047 25 6 4.6818 0.7575 -3.5222 26 6 4.2592 1.3403 -2.3157 27 8 4.1479 2.5533 -2.2314 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6886 1.8464 0.8899 32 1 1.6886 1.8464 -0.8900 33 1 3.8514 0.5682 0.8410 34 1 3.9784 2.1765 0.0889 35 1 3.8504 -1.3947 -0.4674 36 1 3.8476 -3.3431 -2.3544 37 1 4.2265 -5.7997 -3.3070 38 1 5.1872 -6.4334 -1.9491 39 1 4.1804 -4.9825 -1.7263 40 1 8.7103 -6.5453 -2.2569 41 1 7.8956 -5.4196 -1.1443 42 1 7.0430 -6.8699 -1.7256 43 1 10.0529 -7.2555 -4.7055 44 1 5.1249 -1.0631 -4.5244 45 1 4.9095 1.3776 -4.3766 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647109005.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:17:31 Heat of formation + Delta-G solvation = -77.971550 kcal Electronic energy + Delta-G solvation = -27739.476554 eV Core-core repulsion = 23757.867860 eV Total energy + Delta-G solvation = -3981.608694 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.52841 -41.11252 -38.86642 -38.31532 -37.14462 -36.19522 -35.06035 -34.20192 -31.40218 -31.18128 -29.38531 -27.58381 -27.30704 -27.21148 -25.38455 -24.67953 -23.65051 -22.47269 -20.79673 -19.49963 -18.74408 -18.42449 -18.22482 -17.73607 -17.30216 -17.27343 -17.04904 -16.68070 -16.22470 -16.02642 -15.86208 -15.42096 -15.13279 -14.88213 -14.42296 -14.33087 -13.99126 -13.64371 -13.59598 -13.43067 -13.39123 -13.03844 -12.95013 -12.90864 -12.68168 -12.63768 -12.49222 -12.14851 -12.12236 -12.07656 -11.23107 -11.16480 -11.09718 -11.04417 -10.68430 -10.52000 -10.47333 -9.30120 -8.75471 -8.10255 -6.26371 -0.17819 0.69052 1.42131 1.43030 1.46060 1.56072 1.98622 2.26281 2.44900 2.57221 2.80742 3.16177 3.17927 3.67675 3.72232 3.91766 3.93564 4.12242 4.15272 4.37974 4.43687 4.51047 4.51418 4.57755 4.68729 4.70520 4.73925 4.84421 4.90243 4.95418 5.02342 5.07578 5.12721 5.14068 5.34840 5.48079 5.58821 5.71785 5.76917 5.97794 6.04225 6.12957 6.21020 6.30511 6.82553 6.90560 7.18880 7.41627 7.74838 8.93674 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020708 B = 0.002808 C = 0.002662 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.832875 B = 9969.142163 C =10514.860695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.405 6.405 3 C 0.049 3.951 4 C 0.090 3.910 5 N -0.479 5.479 6 C 0.157 3.843 7 C 0.038 3.962 8 N -0.668 5.668 9 C 0.695 3.305 10 O -0.634 6.634 11 N -0.612 5.612 12 C 0.082 3.918 13 C 0.279 3.721 14 H 0.010 0.990 15 C -0.133 4.133 16 C -0.534 4.534 17 H 0.061 0.939 18 C 0.015 3.985 19 N -0.918 5.918 20 Si 0.963 3.037 21 H -0.265 1.265 22 H -0.288 1.288 23 H -0.275 1.275 24 C 0.005 3.995 25 C -0.259 4.259 26 C 0.507 3.493 27 O -0.595 6.595 28 H 0.037 0.963 29 H 0.098 0.902 30 H 0.056 0.944 31 H 0.096 0.904 32 H 0.039 0.961 33 H 0.131 0.869 34 H 0.114 0.886 35 H 0.201 0.799 36 H 0.420 0.580 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.066 0.934 41 H 0.021 0.979 42 H 0.050 0.950 43 H 0.263 0.737 44 H 0.122 0.878 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.883 9.443 12.487 25.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.324 6.324 3 C -0.028 4.028 4 C -0.030 4.030 5 N -0.188 5.188 6 C 0.027 3.973 7 C -0.059 4.059 8 N -0.324 5.324 9 C 0.397 3.603 10 O -0.515 6.515 11 N -0.347 5.347 12 C -0.060 4.060 13 C 0.176 3.824 14 H 0.027 0.973 15 C -0.192 4.192 16 C -0.573 4.573 17 H 0.079 0.921 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.788 3.212 21 H -0.189 1.189 22 H -0.215 1.215 23 H -0.201 1.201 24 C -0.018 4.018 25 C -0.281 4.281 26 C 0.311 3.689 27 O -0.482 6.482 28 H 0.055 0.945 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.114 0.886 32 H 0.058 0.942 33 H 0.149 0.851 34 H 0.132 0.868 35 H 0.217 0.783 36 H 0.261 0.739 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.111 0.889 40 H 0.085 0.915 41 H 0.040 0.960 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -19.002 10.411 12.354 24.941 hybrid contribution -0.013 -0.657 -1.216 1.382 sum -19.015 9.754 11.137 24.099 Atomic orbital electron populations 1.22885 0.79378 1.03915 1.00559 1.87808 1.21447 1.27578 1.95615 1.22877 0.92304 0.85525 1.02115 1.22366 0.94169 1.02217 0.84288 1.45324 1.53353 1.06079 1.14056 1.22105 0.94107 0.83270 0.97843 1.16503 1.12009 0.83682 0.93732 1.42118 1.11306 1.03687 1.75297 1.16160 0.82921 0.82683 0.78506 1.90869 1.41571 1.62454 1.56650 1.47397 1.15046 1.03309 1.68902 1.21780 0.88077 0.96079 1.00103 1.18431 0.79763 0.91260 0.92933 0.97250 1.21893 1.02383 0.99000 0.95902 1.21643 0.95219 1.25329 1.15132 0.92086 1.25702 0.94761 0.98414 0.99605 1.70029 1.00215 1.43158 1.42323 0.85440 0.78344 0.78532 0.78867 1.18872 1.21459 1.20071 1.21602 0.88568 0.93640 0.98022 1.21957 1.11814 0.95183 0.99123 1.17165 0.80026 0.86932 0.84740 1.90904 1.58790 1.14138 1.84399 0.94476 0.88317 0.92515 0.88633 0.94218 0.85102 0.86793 0.78257 0.73950 0.92702 0.90703 0.88875 0.91500 0.96016 0.93129 0.92744 0.85973 0.83051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -5.54 10.14 -148.98 -1.51 -7.05 16 3 C 0.05 0.63 6.28 71.98 0.45 1.08 16 4 C 0.09 1.30 5.77 86.38 0.50 1.79 16 5 N -0.48 -10.37 2.57 -650.35 -1.67 -12.05 16 6 C 0.16 3.16 9.66 83.50 0.81 3.97 16 7 C 0.04 1.02 5.77 37.79 0.22 1.24 16 8 N -0.67 -18.30 5.13 -317.64 -1.63 -19.92 16 9 C 0.70 27.69 8.14 179.06 1.46 29.15 16 10 O -0.63 -31.93 14.77 -4.02 -0.06 -31.99 16 11 N -0.61 -24.55 2.75 -844.82 -2.33 -26.88 16 12 C 0.08 2.29 9.40 127.77 1.20 3.49 16 13 C 0.28 14.14 2.64 44.25 0.12 14.26 16 14 H 0.01 0.59 6.90 -2.39 -0.02 0.57 16 15 C -0.13 -6.22 8.94 71.98 0.64 -5.57 16 16 C -0.53 -28.46 8.37 25.60 0.21 -28.25 16 17 H 0.06 3.15 7.65 -2.91 -0.02 3.13 16 18 C 0.01 0.79 5.30 84.65 0.45 1.24 16 19 N -0.92 -52.50 11.32 21.45 0.24 -52.25 16 20 Si 0.96 42.64 29.54 68.60 2.03 44.66 16 21 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.01 0.16 8.91 22.41 0.20 0.36 16 25 C -0.26 -7.60 9.98 22.38 0.22 -7.37 16 26 C 0.51 14.76 7.40 84.82 0.63 15.39 16 27 O -0.60 -20.37 16.63 -5.65 -0.09 -20.46 16 28 H 0.04 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.10 0.70 8.14 -2.38 -0.02 0.69 16 30 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 31 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.13 1.12 8.02 -2.39 -0.02 1.10 16 34 H 0.11 1.77 7.38 -2.38 -0.02 1.75 16 35 H 0.20 2.57 8.04 -2.91 -0.02 2.55 16 36 H 0.42 8.17 6.64 -92.70 -0.62 7.56 16 37 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.07 2.14 6.41 -2.38 -0.02 2.13 16 39 H 0.09 1.70 6.46 -2.39 -0.02 1.68 16 40 H 0.07 3.51 6.07 -2.39 -0.01 3.50 16 41 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.05 2.10 6.65 -2.38 -0.02 2.09 16 43 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 44 H 0.12 4.04 7.92 -2.91 -0.02 4.02 16 45 H 0.15 4.21 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -78.25 373.28 3.73 -74.53 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.39 Total: 19.12 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 8.36 Total: 32.29 kcal Atomic # 7 Polarization: -105.72 SS G_CDS: -5.38 Total: -111.10 kcal Atomic # 8 Polarization: -57.84 SS G_CDS: -1.66 Total: -59.50 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -78.25 3.73 -74.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647109005.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.445 kcal (2) G-P(sol) polarization free energy of solvation -78.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds