Wall clock time and date at job start Tue Mar 31 2020 14:42:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.42901 * 109.47169 * 2 1 4 4 C 1.42891 * 113.99894 * 175.03505 * 3 2 1 5 5 C 1.50699 * 109.54611 * 302.48007 * 4 3 2 6 6 O 1.21289 * 120.00137 * 140.91031 * 5 4 3 7 7 N 1.34784 * 119.99678 * 320.91063 * 5 4 3 8 8 C 1.40160 * 119.99559 * 175.13445 * 7 5 4 9 9 C 1.40406 * 125.97668 * 359.72506 * 8 7 5 10 10 C 1.35229 * 107.86859 * 179.97438 * 9 8 7 11 11 N 1.34978 * 107.86383 * 359.97438 * 10 9 8 12 12 C 1.46498 * 125.97672 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46919 * 125.00188 * 12 11 10 14 14 H 1.08006 * 120.00026 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00002 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99894 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99765 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47209 * 90.00299 * 17 15 13 19 19 H 1.48505 * 109.46919 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47438 * 329.99828 * 17 15 13 21 21 N 1.31216 * 125.96824 * 179.41393 * 8 7 5 22 22 C 1.53182 * 109.54437 * 62.65610 * 4 3 2 23 23 C 1.53275 * 109.06412 * 176.84991 * 22 4 3 24 24 O 1.42908 * 109.46248 * 302.44640 * 23 22 4 25 25 C 1.42899 * 114.09813 * 61.16045 * 24 23 22 26 26 C 1.53103 * 109.41276 * 298.84184 * 25 24 23 27 27 H 1.09003 * 109.46687 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46801 * 299.99833 * 1 2 3 29 29 H 1.08995 * 109.47112 * 59.99781 * 1 2 3 30 30 H 1.09002 * 109.46801 * 240.00167 * 2 1 3 31 31 H 1.08995 * 109.47112 * 120.00219 * 2 1 3 32 32 H 0.96995 * 120.00074 * 354.85824 * 7 5 4 33 33 H 1.08000 * 126.06100 * 0.02562 * 9 8 7 34 34 H 1.08006 * 126.07272 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.46989 * 245.00010 * 12 11 10 36 36 H 1.08998 * 109.47244 * 5.00303 * 12 11 10 37 37 H 0.97007 * 119.99846 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.52140 * 296.84258 * 22 4 3 39 39 H 1.09002 * 109.51999 * 57.03018 * 22 4 3 40 40 H 1.09002 * 109.46043 * 182.44859 * 23 22 4 41 41 H 1.09000 * 109.46752 * 62.44853 * 23 22 4 42 42 H 1.08996 * 109.48207 * 178.86393 * 25 24 23 43 43 H 1.08995 * 109.49438 * 58.82940 * 25 24 23 44 44 H 1.08998 * 109.51716 * 297.70376 * 26 25 24 45 45 H 1.08998 * 109.51936 * 177.51772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4263 1.4617 0.1130 5 6 3.8886 0.7768 1.3732 6 8 4.9178 0.1350 1.3721 7 7 3.1584 0.8774 2.5016 8 6 3.5328 0.1584 3.6450 9 6 4.6361 -0.7032 3.7530 10 6 4.6532 -1.1999 5.0107 11 7 3.6033 -0.6752 5.6773 12 6 3.2472 -0.9463 7.0722 13 6 3.1492 0.3542 7.8274 14 1 3.3334 1.2891 7.3190 15 6 2.8234 0.3505 9.1671 16 7 2.7375 1.4854 9.8260 17 14 2.5028 -1.2664 10.0459 18 1 3.7755 -1.7848 10.6087 19 1 1.5283 -1.0477 11.1449 20 1 1.9496 -2.2521 9.0828 21 7 2.9167 0.1774 4.8034 22 6 4.0915 0.8051 -1.1006 23 6 5.6086 1.0029 -1.0080 24 8 5.9032 2.3994 -0.9360 25 6 5.3450 3.0554 0.2042 26 6 3.8189 2.9415 0.1604 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3761 1.4504 2.5235 33 1 5.3457 -0.9286 2.9706 34 1 5.3787 -1.8926 5.4110 35 1 2.2869 -1.4608 7.1086 36 1 4.0132 -1.5740 7.5274 37 1 2.5086 1.4828 10.7687 38 1 3.8608 -0.2601 -1.1104 39 1 3.7193 1.2678 -2.0147 40 1 6.0851 0.5759 -1.8905 41 1 5.9860 0.5053 -0.1146 42 1 5.6314 4.1071 0.1949 43 1 5.7187 2.5850 1.1136 44 1 3.4413 3.4473 -0.7282 45 1 3.3935 3.4029 1.0517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647289088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:54 Heat of formation + Delta-G solvation = -33.261037 kcal Electronic energy + Delta-G solvation = -28442.712776 eV Core-core repulsion = 24463.042876 eV Total energy + Delta-G solvation = -3979.669900 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.53579 -40.40557 -38.26789 -37.86093 -34.97429 -33.41572 -33.20818 -31.47175 -31.20452 -30.83829 -29.49978 -27.39831 -25.48550 -24.32154 -23.39186 -22.57584 -22.17612 -21.07659 -19.98625 -19.41995 -17.95539 -17.21699 -16.95692 -16.51883 -16.24683 -15.86641 -15.71352 -15.49749 -15.11597 -14.81760 -14.53286 -14.27221 -14.10094 -13.68076 -13.44645 -13.21059 -12.81556 -12.64015 -12.54606 -12.54426 -12.41712 -12.26825 -12.11784 -11.78745 -11.54684 -11.21452 -11.16615 -10.83046 -10.74113 -10.72078 -10.31589 -10.06239 -10.04546 -9.81908 -9.59254 -9.19810 -8.80486 -8.29171 -7.63275 -6.27198 -4.29982 2.01629 2.52155 2.73619 3.11996 3.14663 3.18991 3.21274 3.54844 3.60859 3.74481 4.19241 4.22207 4.35375 4.45973 4.66780 4.80300 4.92383 4.99881 5.00256 5.04734 5.12594 5.27035 5.32117 5.34755 5.46468 5.50810 5.53126 5.61285 5.66994 5.72380 5.73317 5.86745 5.90252 6.13628 6.28456 6.34248 6.45558 6.59350 6.71238 7.01908 7.18585 7.23620 7.44188 7.72991 8.03192 8.28440 8.46987 8.82054 9.27389 10.85446 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.003081 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.550624 B = 9085.246330 C = 9567.627368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.045 3.955 3 O -0.365 6.365 4 C 0.110 3.890 5 C 0.501 3.499 6 O -0.507 6.507 7 N -0.620 5.620 8 C 0.255 3.745 9 C -0.284 4.284 10 C 0.052 3.948 11 N -0.317 5.317 12 C 0.232 3.768 13 C -0.536 4.536 14 H 0.086 0.914 15 C 0.077 3.923 16 N -0.886 5.886 17 Si 0.873 3.127 18 H -0.271 1.271 19 H -0.279 1.279 20 H -0.264 1.264 21 N -0.292 5.292 22 C -0.160 4.160 23 C 0.042 3.958 24 O -0.381 6.381 25 C 0.060 3.940 26 C -0.141 4.141 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.416 0.584 33 H 0.161 0.839 34 H 0.170 0.830 35 H 0.042 0.958 36 H 0.049 0.951 37 H 0.269 0.731 38 H 0.081 0.919 39 H 0.087 0.913 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.058 0.942 44 H 0.095 0.905 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -2.664 -22.033 22.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.284 6.284 4 C 0.067 3.933 5 C 0.286 3.714 6 O -0.382 6.382 7 N -0.267 5.267 8 C 0.002 3.998 9 C -0.315 4.315 10 C -0.098 4.098 11 N -0.098 5.098 12 C 0.113 3.887 13 C -0.574 4.574 14 H 0.104 0.896 15 C -0.127 4.127 16 N -0.523 5.523 17 Si 0.699 3.301 18 H -0.197 1.197 19 H -0.205 1.205 20 H -0.189 1.189 21 N -0.123 5.123 22 C -0.198 4.198 23 C -0.035 4.035 24 O -0.299 6.299 25 C -0.017 4.017 26 C -0.179 4.179 27 H 0.091 0.909 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.252 0.748 33 H 0.178 0.822 34 H 0.187 0.813 35 H 0.060 0.940 36 H 0.067 0.933 37 H 0.079 0.921 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.076 0.924 44 H 0.114 0.886 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.436 -2.349 -21.212 21.347 hybrid contribution -0.107 -1.152 0.558 1.285 sum 0.329 -3.501 -20.654 20.951 Atomic orbital electron populations 1.21731 0.92942 1.02614 1.03325 1.22683 0.96149 0.83401 1.00929 1.88015 1.18833 1.27317 1.94233 1.21763 0.82541 0.97385 0.91594 1.21268 0.84100 0.81269 0.84761 1.90536 1.23051 1.40486 1.84087 1.42557 1.30442 1.45296 1.08455 1.19152 0.96365 0.96823 0.87462 1.21504 1.03838 1.07614 0.98554 1.22568 0.93551 1.00760 0.92874 1.48656 1.19218 1.31020 1.10930 1.20068 0.97034 0.98931 0.72684 1.21093 1.49490 0.92275 0.94559 0.89645 1.24828 0.94399 0.96536 0.96939 1.69870 1.47118 1.25580 1.09779 0.86909 0.78987 0.83966 0.80248 1.19681 1.20483 1.18891 1.77421 1.21234 1.15392 0.98230 1.22632 0.98080 1.01903 0.97206 1.23129 0.93085 0.82520 1.04727 1.87900 1.74689 1.22128 1.45205 1.22602 0.90561 0.98837 0.89670 1.22247 0.98058 0.92206 1.05366 0.90883 0.91447 0.91728 0.92696 0.92646 0.74783 0.82195 0.81326 0.93992 0.93290 0.92130 0.90091 0.89454 0.89007 0.88525 0.87797 0.92385 0.88616 0.89333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.04 0.44 5.88 37.16 0.22 0.66 16 3 O -0.36 -3.93 9.52 -35.23 -0.34 -4.27 16 4 C 0.11 1.21 0.79 -91.59 -0.07 1.14 16 5 C 0.50 6.88 4.29 -10.98 -0.05 6.83 16 6 O -0.51 -7.83 10.26 5.55 0.06 -7.77 16 7 N -0.62 -9.47 4.68 -11.13 -0.05 -9.53 16 8 C 0.26 4.91 8.10 -154.39 -1.25 3.65 16 9 C -0.28 -5.26 9.61 -39.84 -0.38 -5.64 16 10 C 0.05 0.96 11.44 -17.24 -0.20 0.77 16 11 N -0.32 -6.98 3.67 -62.56 -0.23 -7.21 16 12 C 0.23 5.39 5.33 -5.19 -0.03 5.36 16 13 C -0.54 -14.94 9.79 -34.44 -0.34 -15.28 16 14 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 15 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 16 N -0.89 -26.33 13.96 55.43 0.77 -25.56 16 17 Si 0.87 19.86 27.47 -169.99 -4.67 15.19 16 18 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.26 -5.68 6.54 56.52 0.37 -5.31 16 21 N -0.29 -6.53 12.42 31.44 0.39 -6.14 16 22 C -0.16 -1.58 4.50 -26.49 -0.12 -1.70 16 23 C 0.04 0.45 6.55 37.30 0.24 0.69 16 24 O -0.38 -4.47 10.77 -35.23 -0.38 -4.85 16 25 C 0.06 0.63 6.61 37.21 0.25 0.88 16 26 C -0.14 -1.38 5.28 -26.59 -0.14 -1.52 16 27 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.05 0.48 6.81 -51.93 -0.35 0.12 16 31 H 0.06 0.65 6.48 -51.93 -0.34 0.31 16 32 H 0.42 5.77 8.47 -40.82 -0.35 5.42 16 33 H 0.16 2.82 5.93 -52.49 -0.31 2.51 16 34 H 0.17 2.46 8.06 -52.48 -0.42 2.04 16 35 H 0.04 0.97 7.20 -51.93 -0.37 0.60 16 36 H 0.05 1.03 7.50 -51.93 -0.39 0.64 16 37 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.08 0.77 6.88 -51.93 -0.36 0.41 16 39 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.10 1.22 5.20 -51.93 -0.27 0.95 16 42 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.06 0.71 7.16 -51.93 -0.37 0.34 16 44 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 LS Contribution 358.61 15.07 5.40 5.40 Total: -1.00 -32.39 358.61 -7.13 -39.52 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -6.50 Total: 8.21 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.58 Total: -3.00 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: 0.88 Total: -48.44 kcal Atomic # 8 Polarization: -16.22 SS G_CDS: -0.66 Total: -16.88 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.39 -7.13 -39.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647289088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.259 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds