Wall clock time and date at job start Tue Mar 31 2020 14:42:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 O 1.42901 * 109.47169 * 2 1 4 4 C 1.42891 * 113.99894 * 175.03505 * 3 2 1 5 5 C 1.50699 * 109.54611 * 302.48007 * 4 3 2 6 6 O 1.21289 * 120.00137 * 140.91031 * 5 4 3 7 7 N 1.34784 * 119.99678 * 320.91063 * 5 4 3 8 8 C 1.40160 * 119.99559 * 175.13445 * 7 5 4 9 9 C 1.40406 * 125.97668 * 359.72506 * 8 7 5 10 10 C 1.35229 * 107.86859 * 179.97438 * 9 8 7 11 11 N 1.34978 * 107.86383 * 359.97438 * 10 9 8 12 12 C 1.46498 * 125.97672 * 180.02562 * 11 10 9 13 13 C 1.50702 * 109.46919 * 125.00188 * 12 11 10 14 14 H 1.08006 * 120.00026 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00002 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99894 * 180.02562 * 15 13 12 17 17 Si 1.86800 * 119.99765 * 359.97438 * 15 13 12 18 18 H 1.48501 * 109.47209 * 90.00299 * 17 15 13 19 19 H 1.48505 * 109.46919 * 209.99925 * 17 15 13 20 20 H 1.48497 * 109.47438 * 329.99828 * 17 15 13 21 21 N 1.31216 * 125.96824 * 179.41393 * 8 7 5 22 22 C 1.53182 * 109.54437 * 62.65610 * 4 3 2 23 23 C 1.53275 * 109.06412 * 176.84991 * 22 4 3 24 24 O 1.42908 * 109.46248 * 302.44640 * 23 22 4 25 25 C 1.42899 * 114.09813 * 61.16045 * 24 23 22 26 26 C 1.53103 * 109.41276 * 298.84184 * 25 24 23 27 27 H 1.09003 * 109.46687 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46801 * 299.99833 * 1 2 3 29 29 H 1.08995 * 109.47112 * 59.99781 * 1 2 3 30 30 H 1.09002 * 109.46801 * 240.00167 * 2 1 3 31 31 H 1.08995 * 109.47112 * 120.00219 * 2 1 3 32 32 H 0.96995 * 120.00074 * 354.85824 * 7 5 4 33 33 H 1.08000 * 126.06100 * 0.02562 * 9 8 7 34 34 H 1.08006 * 126.07272 * 180.02562 * 10 9 8 35 35 H 1.09001 * 109.46989 * 245.00010 * 12 11 10 36 36 H 1.08998 * 109.47244 * 5.00303 * 12 11 10 37 37 H 0.97007 * 119.99846 * 180.02562 * 16 15 13 38 38 H 1.08996 * 109.52140 * 296.84258 * 22 4 3 39 39 H 1.09002 * 109.51999 * 57.03018 * 22 4 3 40 40 H 1.09002 * 109.46043 * 182.44859 * 23 22 4 41 41 H 1.09000 * 109.46752 * 62.44853 * 23 22 4 42 42 H 1.08996 * 109.48207 * 178.86393 * 25 24 23 43 43 H 1.08995 * 109.49438 * 58.82940 * 25 24 23 44 44 H 1.08998 * 109.51716 * 297.70376 * 26 25 24 45 45 H 1.08998 * 109.51936 * 177.51772 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0065 1.3473 0.0000 4 6 3.4263 1.4617 0.1130 5 6 3.8886 0.7768 1.3732 6 8 4.9178 0.1350 1.3721 7 7 3.1584 0.8774 2.5016 8 6 3.5328 0.1584 3.6450 9 6 4.6361 -0.7032 3.7530 10 6 4.6532 -1.1999 5.0107 11 7 3.6033 -0.6752 5.6773 12 6 3.2472 -0.9463 7.0722 13 6 3.1492 0.3542 7.8274 14 1 3.3334 1.2891 7.3190 15 6 2.8234 0.3505 9.1671 16 7 2.7375 1.4854 9.8260 17 14 2.5028 -1.2664 10.0459 18 1 3.7755 -1.7848 10.6087 19 1 1.5283 -1.0477 11.1449 20 1 1.9496 -2.2521 9.0828 21 7 2.9167 0.1774 4.8034 22 6 4.0915 0.8051 -1.1006 23 6 5.6086 1.0029 -1.0080 24 8 5.9032 2.3994 -0.9360 25 6 5.3450 3.0554 0.2042 26 6 3.8189 2.9415 0.1604 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 2.3761 1.4504 2.5235 33 1 5.3457 -0.9286 2.9706 34 1 5.3787 -1.8926 5.4110 35 1 2.2869 -1.4608 7.1086 36 1 4.0132 -1.5740 7.5274 37 1 2.5086 1.4828 10.7687 38 1 3.8608 -0.2601 -1.1104 39 1 3.7193 1.2678 -2.0147 40 1 6.0851 0.5759 -1.8905 41 1 5.9860 0.5053 -0.1146 42 1 5.6314 4.1071 0.1949 43 1 5.7187 2.5850 1.1136 44 1 3.4413 3.4473 -0.7282 45 1 3.3935 3.4029 1.0517 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647289088.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:53 Heat of formation + Delta-G solvation = -56.203402 kcal Electronic energy + Delta-G solvation = -28443.707632 eV Core-core repulsion = 24463.042876 eV Total energy + Delta-G solvation = -3980.664756 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.67257 -41.77653 -39.32151 -38.75191 -36.35784 -35.23151 -34.14751 -33.11046 -32.17374 -31.60593 -31.03585 -29.15514 -26.57290 -25.13773 -24.75106 -23.78974 -23.21725 -22.43490 -21.43999 -20.59209 -19.15086 -18.88870 -18.33623 -17.73668 -17.19141 -17.08842 -16.79174 -16.45962 -16.43100 -16.12542 -15.66185 -15.56282 -15.11429 -14.97195 -14.81666 -14.43335 -14.30198 -13.92767 -13.89158 -13.62077 -13.39897 -13.25205 -13.03845 -12.91217 -12.62248 -12.52081 -12.37705 -12.31703 -12.04084 -11.84757 -11.65692 -11.61007 -11.47672 -11.15273 -10.88531 -10.69423 -10.25022 -9.82658 -9.17385 -8.38999 -6.49694 0.75332 1.19407 1.31486 1.36078 1.39786 1.48652 2.09360 2.18443 2.27660 2.35731 2.91161 2.93640 3.21602 3.47185 3.54237 3.85921 3.88955 4.03914 4.15491 4.17050 4.19058 4.24034 4.38065 4.47170 4.53745 4.57088 4.66611 4.70134 4.75366 4.78683 4.83005 4.84564 4.92342 4.93799 4.96162 4.98121 5.21731 5.21997 5.24179 5.80832 5.81850 5.97064 6.11902 6.17133 6.37298 6.55960 6.82902 6.97562 7.13405 8.78135 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018326 B = 0.003081 C = 0.002926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.550624 B = 9085.246330 C = 9567.627368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.041 3.959 3 O -0.366 6.366 4 C 0.115 3.885 5 C 0.503 3.497 6 O -0.522 6.522 7 N -0.619 5.619 8 C 0.262 3.738 9 C -0.292 4.292 10 C 0.061 3.939 11 N -0.342 5.342 12 C 0.239 3.761 13 C -0.548 4.548 14 H 0.025 0.975 15 C 0.015 3.985 16 N -0.942 5.942 17 Si 0.956 3.044 18 H -0.253 1.253 19 H -0.281 1.281 20 H -0.239 1.239 21 N -0.346 5.346 22 C -0.155 4.155 23 C 0.040 3.960 24 O -0.390 6.390 25 C 0.059 3.941 26 C -0.139 4.139 27 H 0.085 0.915 28 H 0.055 0.945 29 H 0.075 0.925 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.420 0.580 33 H 0.170 0.830 34 H 0.212 0.788 35 H 0.046 0.954 36 H 0.083 0.917 37 H 0.272 0.728 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.112 0.888 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.034 0.966 44 H 0.114 0.886 45 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.878 -4.708 -23.503 23.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 O -0.285 6.285 4 C 0.072 3.928 5 C 0.289 3.711 6 O -0.397 6.397 7 N -0.268 5.268 8 C 0.008 3.992 9 C -0.323 4.323 10 C -0.087 4.087 11 N -0.123 5.123 12 C 0.120 3.880 13 C -0.586 4.586 14 H 0.044 0.956 15 C -0.184 4.184 16 N -0.580 5.580 17 Si 0.776 3.224 18 H -0.177 1.177 19 H -0.206 1.206 20 H -0.162 1.162 21 N -0.176 5.176 22 C -0.193 4.193 23 C -0.036 4.036 24 O -0.309 6.309 25 C -0.018 4.018 26 C -0.177 4.177 27 H 0.104 0.896 28 H 0.074 0.926 29 H 0.094 0.906 30 H 0.090 0.910 31 H 0.053 0.947 32 H 0.257 0.743 33 H 0.188 0.812 34 H 0.228 0.772 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.123 0.877 40 H 0.130 0.870 41 H 0.093 0.907 42 H 0.142 0.858 43 H 0.052 0.948 44 H 0.132 0.868 45 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 0.538 -4.390 -22.735 23.162 hybrid contribution -0.077 -0.408 0.876 0.970 sum 0.461 -4.798 -21.859 22.384 Atomic orbital electron populations 1.21741 0.91839 1.03467 1.03302 1.22787 0.97078 0.82932 1.00664 1.88028 1.18507 1.27906 1.94074 1.21818 0.82863 0.97869 0.90231 1.21965 0.83492 0.80667 0.84960 1.90530 1.23711 1.41092 1.84360 1.42742 1.30946 1.45206 1.07903 1.19514 0.95906 0.96228 0.87594 1.21727 1.03861 1.07675 0.99055 1.23275 0.92715 1.00170 0.92508 1.48532 1.20672 1.32396 1.10749 1.19899 0.98334 0.96597 0.73212 1.21223 1.49791 0.92379 0.95256 0.95631 1.25924 0.93562 1.01268 0.97652 1.70051 1.48651 1.28916 1.10426 0.85613 0.79559 0.78413 0.78767 1.17696 1.20645 1.16215 1.77337 1.23295 1.17394 0.99598 1.22636 0.97303 1.02292 0.97068 1.23150 0.93815 0.82030 1.04616 1.87890 1.75060 1.22553 1.45359 1.22672 0.90976 0.99670 0.88456 1.22282 0.97527 0.91505 1.06371 0.89644 0.92581 0.90595 0.91037 0.94746 0.74267 0.81241 0.77178 0.93632 0.89975 0.91856 0.89612 0.87665 0.87000 0.90741 0.85757 0.94751 0.86756 0.89171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 10.28 71.99 0.74 -1.54 16 2 C 0.04 0.77 5.88 71.99 0.42 1.19 16 3 O -0.37 -7.36 9.52 -148.98 -1.42 -8.78 16 4 C 0.12 2.39 0.79 -11.42 -0.01 2.38 16 5 C 0.50 13.69 4.29 87.66 0.38 14.07 16 6 O -0.52 -16.02 10.26 -3.06 -0.03 -16.05 16 7 N -0.62 -19.27 4.68 -307.51 -1.44 -20.71 16 8 C 0.26 10.25 8.10 133.32 1.08 11.33 16 9 C -0.29 -10.70 9.61 22.10 0.21 -10.48 16 10 C 0.06 2.20 11.44 83.52 0.96 3.16 16 11 N -0.34 -15.07 3.67 -351.84 -1.29 -16.36 16 12 C 0.24 10.94 5.33 85.63 0.46 11.40 16 13 C -0.55 -31.52 9.79 25.60 0.25 -31.27 16 14 H 0.03 1.72 8.06 -2.91 -0.02 1.70 16 15 C 0.01 0.84 5.47 84.65 0.46 1.30 16 16 N -0.94 -57.86 13.96 21.45 0.30 -57.56 16 17 Si 0.96 40.31 27.47 68.60 1.88 42.19 16 18 H -0.25 -9.89 7.11 99.48 0.71 -9.18 16 19 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.24 -9.05 6.54 99.48 0.65 -8.40 16 21 N -0.35 -15.94 12.42 -54.45 -0.68 -16.62 16 22 C -0.15 -2.74 4.50 30.75 0.14 -2.60 16 23 C 0.04 0.80 6.55 72.07 0.47 1.27 16 24 O -0.39 -8.59 10.77 -148.98 -1.60 -10.19 16 25 C 0.06 1.19 6.61 72.02 0.48 1.67 16 26 C -0.14 -2.54 5.28 30.69 0.16 -2.38 16 27 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 30 H 0.07 1.09 6.81 -2.39 -0.02 1.07 16 31 H 0.03 0.79 6.48 -2.39 -0.02 0.77 16 32 H 0.42 12.04 8.47 -92.71 -0.79 11.25 16 33 H 0.17 5.85 5.93 -2.91 -0.02 5.83 16 34 H 0.21 5.45 8.06 -2.91 -0.02 5.43 16 35 H 0.05 2.04 7.20 -2.39 -0.02 2.02 16 36 H 0.08 3.21 7.50 -2.39 -0.02 3.19 16 37 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 38 H 0.09 1.44 6.88 -2.39 -0.02 1.42 16 39 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 41 H 0.07 1.85 5.20 -2.39 -0.01 1.83 16 42 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 43 H 0.03 0.85 7.16 -2.39 -0.02 0.83 16 44 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 45 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 Total: -1.00 -73.91 358.61 2.10 -71.82 By element: Atomic # 1 Polarization: 32.60 SS G_CDS: 0.18 Total: 32.77 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 6.20 Total: -0.51 kcal Atomic # 7 Polarization: -108.14 SS G_CDS: -3.11 Total: -111.25 kcal Atomic # 8 Polarization: -31.97 SS G_CDS: -3.05 Total: -35.02 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.19 kcal Total: -73.91 2.10 -71.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647289088.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.614 kcal (2) G-P(sol) polarization free energy of solvation -73.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds