Wall clock time and date at job start Tue Mar 31 2020 14:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42898 * 109.47584 * 2 1 4 4 C 1.35355 * 117.00186 * 180.02562 * 3 2 1 5 5 N 1.30543 * 125.44433 * 179.97438 * 4 3 2 6 6 C 1.36338 * 108.38130 * 180.02562 * 5 4 3 7 7 C 1.47363 * 126.41124 * 180.02562 * 6 5 4 8 8 O 1.21620 * 119.99657 * 187.38440 * 7 6 5 9 9 N 1.34779 * 120.00335 * 7.37922 * 7 6 5 10 10 C 1.46929 * 120.62660 * 6.23781 * 9 7 6 11 11 C 1.53187 * 108.89147 * 233.66986 * 10 9 7 12 12 C 1.53040 * 109.31468 * 305.29872 * 11 10 9 13 13 C 1.53042 * 109.54079 * 61.36180 * 12 11 10 14 14 C 1.47208 * 120.81514 * 186.37194 * 9 7 6 15 15 H 1.08993 * 109.55838 * 246.16822 * 14 9 7 16 16 C 1.53001 * 109.53259 * 6.54215 * 14 9 7 17 17 N 1.46504 * 109.47186 * 286.54038 * 16 14 9 18 18 C 1.36938 * 119.99696 * 175.61407 * 17 16 14 19 19 H 1.08000 * 120.00084 * 359.97438 * 18 17 16 20 20 C 1.38808 * 119.99553 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00072 * 179.97438 * 20 18 17 22 22 Si 1.86800 * 120.00358 * 0.02562 * 20 18 17 23 23 H 1.48499 * 109.47132 * 89.99568 * 22 20 18 24 24 H 1.48496 * 109.47097 * 209.99503 * 22 20 18 25 25 H 1.48501 * 109.46745 * 329.99710 * 22 20 18 26 26 C 1.35919 * 107.17188 * 0.26414 * 6 5 4 27 27 O 1.34204 * 125.44278 * 0.02562 * 4 3 2 28 28 H 1.09004 * 109.47239 * 59.99423 * 1 2 3 29 29 H 1.08996 * 109.47826 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46768 * 300.00128 * 1 2 3 31 31 H 1.09002 * 109.46768 * 239.99872 * 2 1 3 32 32 H 1.09004 * 109.47239 * 120.00577 * 2 1 3 33 33 H 1.08999 * 109.58000 * 113.81590 * 10 9 7 34 34 H 1.08993 * 109.58629 * 353.53396 * 10 9 7 35 35 H 1.08999 * 109.49724 * 65.24632 * 11 10 9 36 36 H 1.08995 * 109.49836 * 185.34362 * 11 10 9 37 37 H 1.09003 * 109.46223 * 181.38681 * 12 11 10 38 38 H 1.09006 * 109.45905 * 301.35644 * 12 11 10 39 39 H 1.08998 * 109.49592 * 58.58912 * 13 12 11 40 40 H 1.08995 * 109.49772 * 178.65072 * 13 12 11 41 41 H 1.09004 * 109.46916 * 46.54119 * 16 14 9 42 42 H 1.08998 * 109.46807 * 166.53752 * 16 14 9 43 43 H 0.96993 * 119.99973 * 355.61599 * 17 16 14 44 44 H 0.96999 * 120.00470 * 180.02562 * 21 20 18 45 45 H 1.07999 * 126.45440 * 179.73861 * 26 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3483 1.5245 -0.0005 5 7 3.9595 2.6780 -0.0011 6 6 5.3040 2.4521 -0.0021 7 6 6.3632 3.4767 -0.0025 8 8 7.5264 3.1488 -0.1387 9 7 6.0428 4.7772 0.1481 10 6 4.6617 5.1779 0.4494 11 6 4.2090 6.2137 -0.5844 12 6 5.2062 7.3744 -0.6081 13 6 6.5865 6.8551 -1.0171 14 6 7.0661 5.8266 0.0118 15 1 7.2177 6.3156 0.9740 16 6 8.3799 5.2016 -0.4617 17 7 8.9921 4.4570 0.6415 18 6 10.1357 3.7345 0.4285 19 1 10.5861 3.7133 -0.5529 20 6 10.7160 3.0295 1.4739 21 7 11.8150 2.3347 1.2692 22 14 9.9367 3.0658 3.1712 23 1 8.9604 1.9533 3.2914 24 1 10.9924 2.9116 4.2040 25 1 9.2376 4.3612 3.3673 26 6 5.4846 1.1050 -0.0081 27 8 4.2630 0.5425 -0.0016 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 4.6173 5.6141 1.4473 34 1 4.0097 4.3057 0.4026 35 1 4.1672 5.7499 -1.5699 36 1 3.2212 6.5881 -0.3158 37 1 4.8732 8.1246 -1.3254 38 1 5.2661 7.8220 0.3840 39 1 6.5223 6.3852 -1.9985 40 1 7.2906 7.6861 -1.0571 41 1 8.1812 4.5234 -1.2917 42 1 9.0590 5.9884 -0.7901 43 1 8.5874 4.4758 1.5228 44 1 12.2203 1.8417 1.9996 45 1 6.4308 0.5844 -0.0144 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661933748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:03 Heat of formation + Delta-G solvation = -3.580409 kcal Electronic energy + Delta-G solvation = -28818.600590 eV Core-core repulsion = 24840.217738 eV Total energy + Delta-G solvation = -3978.382852 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.57980 -41.37669 -39.98301 -38.22447 -36.81257 -35.91918 -33.75146 -33.63868 -32.81648 -31.86703 -30.54144 -27.90976 -26.17116 -25.17385 -24.37197 -24.11997 -23.68770 -22.44987 -21.61042 -20.79043 -19.74543 -19.16756 -18.66143 -17.96540 -17.47326 -16.98042 -16.62458 -16.54041 -16.08278 -15.95903 -15.67261 -15.25134 -15.18125 -14.79294 -14.69117 -14.46062 -14.05679 -13.92969 -13.86817 -13.73706 -13.57447 -13.37678 -12.92577 -12.83686 -12.67105 -12.50544 -12.30240 -12.14995 -11.93179 -11.79833 -11.76626 -11.69920 -11.41904 -10.88625 -10.72750 -10.27395 -9.82520 -9.45719 -8.90154 -7.89601 -5.12393 0.06522 0.79764 0.92920 1.33602 1.37953 1.44797 1.62596 2.04970 2.34863 2.55715 3.27927 3.42291 3.66773 3.72857 3.81453 3.91247 3.96580 4.05334 4.07156 4.15274 4.25336 4.30385 4.32318 4.38003 4.45154 4.58390 4.63037 4.80168 4.86946 4.88053 4.95000 5.05118 5.11229 5.14618 5.16281 5.22477 5.27643 5.36124 5.53144 5.69683 5.85025 5.94123 6.32469 6.33533 6.57929 7.20743 7.34749 7.99008 8.18694 9.34257 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011520 B = 0.004624 C = 0.003556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2429.880547 B = 6053.513988 C = 7872.362349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.039 3.961 3 O -0.250 6.250 4 C 0.384 3.616 5 N -0.464 5.464 6 C -0.058 4.058 7 C 0.555 3.445 8 O -0.491 6.491 9 N -0.596 5.596 10 C 0.064 3.936 11 C -0.120 4.120 12 C -0.114 4.114 13 C -0.119 4.119 14 C 0.142 3.858 15 H 0.072 0.928 16 C 0.166 3.834 17 N -0.722 5.722 18 C -0.180 4.180 19 H 0.048 0.952 20 C -0.075 4.075 21 N -0.996 5.996 22 Si 0.952 3.048 23 H -0.289 1.289 24 H -0.297 1.297 25 H -0.262 1.262 26 C 0.007 3.993 27 O -0.217 6.217 28 H 0.071 0.929 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.059 0.941 34 H 0.143 0.857 35 H 0.054 0.946 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.089 0.911 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.356 0.644 44 H 0.252 0.748 45 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.946 1.364 -3.128 29.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.035 4.035 3 O -0.159 6.159 4 C 0.139 3.861 5 N -0.212 5.212 6 C -0.175 4.175 7 C 0.340 3.660 8 O -0.364 6.364 9 N -0.331 5.331 10 C -0.058 4.058 11 C -0.158 4.158 12 C -0.151 4.151 13 C -0.157 4.157 14 C 0.039 3.961 15 H 0.090 0.910 16 C 0.040 3.960 17 N -0.365 5.365 18 C -0.312 4.312 19 H 0.066 0.934 20 C -0.264 4.264 21 N -0.650 5.650 22 Si 0.782 3.218 23 H -0.216 1.216 24 H -0.224 1.224 25 H -0.188 1.188 26 C -0.065 4.065 27 O -0.108 6.108 28 H 0.090 0.910 29 H 0.128 0.872 30 H 0.089 0.911 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.073 0.927 36 H 0.110 0.890 37 H 0.102 0.898 38 H 0.088 0.912 39 H 0.079 0.921 40 H 0.107 0.893 41 H 0.045 0.955 42 H 0.044 0.956 43 H 0.188 0.812 44 H 0.060 0.940 45 H 0.261 0.739 Dipole moment (debyes) X Y Z Total from point charges -28.727 1.756 -3.338 28.973 hybrid contribution 0.576 -1.270 1.028 1.733 sum -28.151 0.485 -2.310 28.250 Atomic orbital electron populations 1.21849 0.89365 1.05063 1.04045 1.23451 0.98190 0.77910 1.03952 1.86412 1.07543 1.33128 1.88811 1.23817 0.84141 0.81780 0.96398 1.70723 1.03661 1.20705 1.26074 1.21877 0.90118 0.94545 1.10994 1.17406 0.86493 0.82516 0.79570 1.91396 1.17011 1.80889 1.47118 1.47938 1.10812 1.04163 1.70182 1.22928 0.81868 1.02998 0.98012 1.21781 0.99664 0.95557 0.98829 1.21530 0.93336 0.97722 1.02515 1.21858 0.98675 0.97629 0.97580 1.21579 0.86771 0.88113 0.99674 0.91048 1.20875 0.91161 0.92550 0.91393 1.42477 1.28276 1.57894 1.07861 1.18877 0.98351 1.18764 0.95164 0.93436 1.25236 0.98742 1.00977 1.01419 1.69879 1.23813 1.38950 1.32358 0.85422 0.77198 0.78055 0.81122 1.21589 1.22390 1.18767 1.25213 0.86244 0.92706 1.02378 1.84397 1.15856 1.38666 1.71861 0.91038 0.87215 0.91102 0.89959 0.90069 0.92223 0.84062 0.92744 0.88968 0.89770 0.91224 0.92122 0.89294 0.95482 0.95645 0.81156 0.93957 0.73937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 71.98 0.74 -0.19 16 2 C 0.04 0.44 6.38 71.98 0.46 0.90 16 3 O -0.25 -4.85 10.19 -64.24 -0.65 -5.50 16 4 C 0.38 9.47 8.98 130.43 1.17 10.64 16 5 N -0.46 -13.32 7.79 -419.39 -3.27 -16.59 16 6 C -0.06 -1.89 6.71 40.31 0.27 -1.62 16 7 C 0.55 21.42 7.41 86.64 0.64 22.06 16 8 O -0.49 -23.41 10.41 -4.09 -0.04 -23.45 16 9 N -0.60 -19.69 2.98 -798.29 -2.38 -22.07 16 10 C 0.06 1.65 6.31 86.36 0.54 2.20 16 11 C -0.12 -2.44 6.08 30.67 0.19 -2.26 16 12 C -0.11 -2.14 5.88 30.62 0.18 -1.96 16 13 C -0.12 -2.89 5.34 30.67 0.16 -2.73 16 14 C 0.14 4.64 2.91 44.92 0.13 4.77 16 15 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 16 C 0.17 7.13 4.90 86.38 0.42 7.55 16 17 N -0.72 -37.44 3.08 -343.44 -1.06 -38.50 16 18 C -0.18 -11.16 9.70 84.03 0.81 -10.34 16 19 H 0.05 3.25 8.06 -2.91 -0.02 3.22 16 20 C -0.07 -4.74 5.50 84.86 0.47 -4.28 16 21 N -1.00 -68.08 13.97 21.65 0.30 -67.77 16 22 Si 0.95 50.28 27.74 68.60 1.90 52.18 16 23 H -0.29 -15.06 7.11 99.48 0.71 -14.36 16 24 H -0.30 -15.59 7.11 99.48 0.71 -14.88 16 25 H -0.26 -12.78 6.52 99.48 0.65 -12.13 16 26 C 0.01 0.19 11.94 67.28 0.80 1.00 16 27 O -0.22 -5.29 10.20 18.86 0.19 -5.10 16 28 H 0.07 0.48 8.14 -2.38 -0.02 0.46 16 29 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 30 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 34 H 0.14 3.89 3.68 -49.76 -0.18 3.71 16 35 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.09 1.45 8.14 -2.39 -0.02 1.44 16 37 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 38 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 41 H 0.03 1.29 6.38 -2.39 -0.02 1.27 16 42 H 0.03 1.08 8.09 -2.39 -0.02 1.06 16 43 H 0.36 18.23 5.47 -92.71 -0.51 17.72 16 44 H 0.25 16.42 8.31 -92.71 -0.77 15.64 16 45 H 0.24 6.52 8.06 -2.91 -0.02 6.50 16 Total: -1.00 -80.55 359.30 2.26 -78.29 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.27 Total: 22.79 kcal Atomic # 6 Polarization: 18.73 SS G_CDS: 7.00 Total: 25.73 kcal Atomic # 7 Polarization: -138.53 SS G_CDS: -6.41 Total: -144.93 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.50 Total: -34.06 kcal Atomic # 14 Polarization: 50.28 SS G_CDS: 1.90 Total: 52.18 kcal Total: -80.55 2.26 -78.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661933748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.710 kcal (2) G-P(sol) polarization free energy of solvation -80.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds