Wall clock time and date at job start Tue Mar 31 2020 14:14:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.52997 * 109.46817 * 119.99820 * 2 1 3 5 5 C 1.53004 * 109.47236 * 184.99998 * 4 2 1 6 6 N 1.46499 * 109.47194 * 180.02562 * 5 4 2 7 7 C 1.34783 * 119.99833 * 180.02562 * 6 5 4 8 8 O 1.21612 * 119.99798 * 359.97438 * 7 6 5 9 9 C 1.47419 * 119.99930 * 179.97438 * 7 6 5 10 10 N 1.36070 * 126.44637 * 359.68854 * 9 7 6 11 11 C 1.29943 * 108.47177 * 179.86040 * 10 9 7 12 12 O 1.34047 * 109.24260 * 0.40305 * 11 10 9 13 13 C 1.34252 * 108.23075 * 359.74866 * 12 11 10 14 14 C 1.50700 * 126.52867 * 179.97438 * 13 12 11 15 15 H 1.08997 * 109.82262 * 195.74085 * 14 13 12 16 16 C 1.54379 * 109.82797 * 74.85439 * 14 13 12 17 17 C 1.55450 * 102.18669 * 219.18578 * 16 14 13 18 18 C 1.54946 * 100.99027 * 34.04036 * 17 16 14 19 19 O 1.43241 * 109.82721 * 316.62974 * 14 13 12 20 20 N 1.46505 * 109.47411 * 239.99921 * 2 1 3 21 21 C 1.36929 * 119.99833 * 84.99952 * 20 2 1 22 22 H 1.08000 * 120.00309 * 359.97438 * 21 20 2 23 23 C 1.38813 * 119.99926 * 179.97438 * 21 20 2 24 24 N 1.31621 * 119.99705 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00172 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46980 * 60.00329 * 25 23 21 27 27 H 1.48506 * 109.47241 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47571 * 300.00284 * 25 23 21 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 32 32 H 1.09001 * 109.47630 * 305.00128 * 4 2 1 33 33 H 1.09004 * 109.47346 * 65.00258 * 4 2 1 34 34 H 1.09001 * 109.46917 * 300.00567 * 5 4 2 35 35 H 1.09004 * 109.46741 * 59.99889 * 5 4 2 36 36 H 0.96997 * 120.00325 * 359.97438 * 6 5 4 37 37 H 1.08000 * 125.37169 * 180.12331 * 11 10 9 38 38 H 1.09001 * 110.85213 * 337.32032 * 16 14 13 39 39 H 1.09005 * 110.84830 * 100.94582 * 16 14 13 40 40 H 1.09005 * 111.06030 * 276.12334 * 17 16 14 41 41 H 1.08997 * 111.18832 * 152.00935 * 17 16 14 42 42 H 1.09002 * 110.30957 * 204.69685 * 18 17 16 43 43 H 1.08995 * 110.31253 * 82.52099 * 18 17 16 44 44 H 0.97000 * 119.99634 * 265.00306 * 20 2 1 45 45 H 0.97006 * 119.99630 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.6133 1.3138 6 7 4.0531 -1.3044 2.5097 7 6 5.3740 -1.3398 2.7754 8 8 6.1605 -0.7985 2.0221 9 6 5.8653 -2.0348 3.9791 10 7 5.1063 -2.6755 4.9090 11 6 5.8952 -3.1656 5.8178 12 8 7.1638 -2.8559 5.5151 13 6 7.1630 -2.1513 4.3723 14 6 8.3692 -1.5948 3.6607 15 1 8.0561 -0.8478 2.9314 16 6 9.1297 -2.7346 2.9495 17 6 10.6136 -2.3400 3.1915 18 6 10.5221 -1.6939 4.5968 19 8 9.2631 -1.0023 4.6103 20 7 2.0184 -0.6906 -1.1962 21 6 2.1492 -0.0075 -2.3757 22 1 1.8920 1.0403 -2.4243 23 6 2.6125 -0.6618 -3.5089 24 7 2.9256 -1.9388 -3.4498 25 14 2.7903 0.2699 -5.1182 26 1 3.7447 1.3931 -4.9371 27 1 3.2994 -0.6485 -6.1683 28 1 1.4676 0.8056 -5.5288 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6053 -0.2617 2.1370 33 1 1.7516 -1.7715 1.2056 34 1 3.9994 -1.0728 0.4261 35 1 3.8531 0.4370 1.3574 36 1 3.4258 -1.7358 3.1107 37 1 5.5784 -3.7292 6.6828 38 1 8.9046 -3.6971 3.4090 39 1 8.8994 -2.7489 1.8841 40 1 10.9532 -1.6182 2.4486 41 1 11.2579 -3.2191 3.2046 42 1 11.3416 -0.9904 4.7439 43 1 10.5394 -2.4631 5.3688 44 1 2.2491 -1.6318 -1.1525 45 1 3.2497 -2.3959 -4.2416 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662960278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:17 Heat of formation + Delta-G solvation = -81.047346 kcal Electronic energy + Delta-G solvation = -27183.003028 eV Core-core repulsion = 23201.260958 eV Total energy + Delta-G solvation = -3981.742070 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.56436 -40.73632 -40.39837 -38.16714 -36.07007 -35.78745 -34.11974 -33.44521 -32.64967 -31.15675 -29.90315 -29.01570 -26.08223 -25.44345 -24.45236 -23.70578 -22.79639 -22.24665 -21.88532 -21.20184 -19.47750 -19.10163 -17.92587 -17.86777 -17.62386 -17.19805 -16.89977 -16.75634 -16.35850 -16.09861 -15.63872 -15.38451 -15.21667 -14.87342 -14.61392 -14.53968 -14.18821 -14.12094 -13.57175 -13.24758 -12.99191 -12.89028 -12.78484 -12.63876 -12.52059 -12.32831 -12.30455 -12.26485 -12.13606 -12.06621 -11.87184 -11.67553 -11.59470 -11.25853 -10.92050 -10.90645 -10.32001 -9.98084 -8.96837 -7.90789 -5.17809 -0.12752 0.98875 1.42509 1.47146 1.50130 1.55588 2.03879 2.10202 2.58597 2.70103 3.01743 3.27982 3.39177 3.43087 3.72019 3.80415 3.90772 3.97648 4.01844 4.12005 4.21426 4.26417 4.32438 4.35675 4.55472 4.66367 4.71284 4.73346 4.76462 4.84639 4.87234 4.93166 5.00768 5.08269 5.11418 5.14045 5.20156 5.35521 5.39304 5.55218 5.61590 5.77790 6.21458 6.31746 6.52360 7.02902 7.37796 8.15114 8.37151 9.32598 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013942 B = 0.002798 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.832013 B =10006.141802 C =11475.663751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.045 0.955 4 C -0.117 4.117 5 C 0.133 3.867 6 N -0.696 5.696 7 C 0.589 3.411 8 O -0.567 6.567 9 C -0.082 4.082 10 N -0.489 5.489 11 C 0.203 3.797 12 O -0.190 6.190 13 C 0.028 3.972 14 C 0.151 3.849 15 H 0.119 0.881 16 C -0.145 4.145 17 C -0.145 4.145 18 C 0.039 3.961 19 O -0.390 6.390 20 N -0.735 5.735 21 C -0.234 4.234 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.967 3.033 26 H -0.281 1.281 27 H -0.297 1.297 28 H -0.278 1.278 29 H 0.044 0.956 30 H 0.075 0.925 31 H 0.034 0.966 32 H 0.102 0.898 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.059 0.941 36 H 0.417 0.583 37 H 0.311 0.689 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.108 0.892 43 H 0.075 0.925 44 H 0.371 0.629 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.142 -4.176 24.098 26.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.063 0.937 4 C -0.155 4.155 5 C 0.009 3.991 6 N -0.347 5.347 7 C 0.376 3.624 8 O -0.447 6.447 9 C -0.201 4.201 10 N -0.217 5.217 11 C -0.025 4.025 12 O -0.076 6.076 13 C -0.030 4.030 14 C 0.092 3.908 15 H 0.136 0.864 16 C -0.183 4.183 17 C -0.183 4.183 18 C -0.036 4.036 19 O -0.309 6.309 20 N -0.376 5.376 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.797 3.203 26 H -0.207 1.207 27 H -0.224 1.224 28 H -0.204 1.204 29 H 0.063 0.937 30 H 0.093 0.907 31 H 0.053 0.947 32 H 0.121 0.879 33 H 0.089 0.911 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.254 0.746 37 H 0.326 0.674 38 H 0.105 0.895 39 H 0.107 0.893 40 H 0.105 0.895 41 H 0.132 0.868 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.203 0.797 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.958 -3.510 23.568 26.227 hybrid contribution 0.350 -0.333 -1.068 1.173 sum 11.308 -3.843 22.499 25.473 Atomic orbital electron populations 1.22263 0.97106 1.01043 1.00906 1.20436 0.93167 0.95224 0.85459 0.93688 1.21922 0.92352 1.02110 0.99105 1.21236 0.95558 0.96347 0.85910 1.45732 1.06678 1.55472 1.26775 1.17092 0.83035 0.79092 0.83212 1.90761 1.56207 1.48044 1.49708 1.21302 0.90774 1.08375 0.99648 1.70739 1.34691 1.12936 1.03365 1.29364 0.74653 0.98066 1.00437 1.84417 1.34292 1.54426 1.34440 1.24241 0.97366 0.95003 0.86415 1.21684 0.84627 0.96242 0.88201 0.86384 1.23217 0.95728 0.97363 1.02005 1.23342 0.94946 1.02924 0.97051 1.23756 0.85207 0.97220 0.97465 1.88506 1.25298 1.56429 1.60681 1.42645 1.78400 1.10230 1.06288 1.19565 1.34484 0.94106 0.88429 0.90794 1.25489 1.03284 0.96861 1.01322 1.69811 1.52863 1.10167 1.29285 0.85297 0.77897 0.77323 0.79790 1.20734 1.22388 1.20391 0.93687 0.90660 0.94688 0.87916 0.91136 0.93732 0.92300 0.74574 0.67415 0.89514 0.89283 0.89539 0.86799 0.87388 0.90713 0.79661 0.94285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.15 9.49 71.98 0.68 -4.46 16 2 C 0.17 6.30 2.89 44.99 0.13 6.43 16 3 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 4 C -0.12 -3.54 4.87 30.59 0.15 -3.39 16 5 C 0.13 4.66 5.56 86.38 0.48 5.14 16 6 N -0.70 -21.44 5.55 -466.35 -2.59 -24.02 16 7 C 0.59 20.11 7.81 86.66 0.68 20.79 16 8 O -0.57 -22.88 14.57 -4.07 -0.06 -22.94 16 9 C -0.08 -2.34 6.99 40.41 0.28 -2.06 16 10 N -0.49 -11.12 11.06 -305.14 -3.37 -14.50 16 11 C 0.20 2.96 13.19 130.52 1.72 4.69 16 12 O -0.19 -3.75 10.73 0.51 0.01 -3.75 16 13 C 0.03 0.71 6.20 25.19 0.16 0.87 16 14 C 0.15 3.80 3.77 30.32 0.11 3.91 16 15 H 0.12 3.64 5.84 -2.39 -0.01 3.62 16 16 C -0.15 -2.80 6.55 31.91 0.21 -2.59 16 17 C -0.15 -1.94 7.16 32.10 0.23 -1.71 16 18 C 0.04 0.58 7.78 72.65 0.57 1.14 16 19 O -0.39 -9.35 11.00 -148.92 -1.64 -10.99 16 20 N -0.73 -36.82 4.57 -322.93 -1.48 -38.29 16 21 C -0.23 -13.10 9.93 84.04 0.83 -12.27 16 22 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.54 5.50 84.86 0.47 -4.08 16 24 N -0.97 -60.62 13.06 21.65 0.28 -60.33 16 25 Si 0.97 47.36 29.55 68.60 2.03 49.39 16 26 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 27 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 28 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 29 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 31 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 33 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.04 1.96 7.75 -2.39 -0.02 1.94 16 35 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.42 10.70 8.20 -92.71 -0.76 9.94 16 37 H 0.31 0.31 8.06 -2.91 -0.02 0.29 16 38 H 0.09 1.50 7.84 -2.39 -0.02 1.48 16 39 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 40 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 44 H 0.37 20.16 7.80 -92.71 -0.72 19.44 16 45 H 0.25 15.17 8.31 -92.70 -0.77 14.40 16 Total: -1.00 -77.32 378.37 -0.59 -77.91 By element: Atomic # 1 Polarization: 35.58 SS G_CDS: -0.46 Total: 35.12 kcal Atomic # 6 Polarization: 5.71 SS G_CDS: 6.70 Total: 12.41 kcal Atomic # 7 Polarization: -129.99 SS G_CDS: -7.16 Total: -137.15 kcal Atomic # 8 Polarization: -35.99 SS G_CDS: -1.69 Total: -37.68 kcal Atomic # 14 Polarization: 47.36 SS G_CDS: 2.03 Total: 49.39 kcal Total: -77.32 -0.59 -77.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662960278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.141 kcal (2) G-P(sol) polarization free energy of solvation -77.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.906 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds