Wall clock time and date at job start Tue Mar 31 2020 14:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 N 1.46500 * 109.47442 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00522 * 180.02562 * 6 5 4 8 8 O 1.21615 * 119.99583 * 0.02562 * 7 6 5 9 9 C 1.47420 * 120.00181 * 179.97438 * 7 6 5 10 10 N 1.36063 * 126.44812 * 359.69224 * 9 7 6 11 11 C 1.29941 * 108.47592 * 179.81977 * 10 9 7 12 12 O 1.34056 * 109.24140 * 0.44538 * 11 10 9 13 13 C 1.34259 * 108.22551 * 359.72071 * 12 11 10 14 14 C 1.50701 * 126.52209 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.27203 * 165.61192 * 14 13 12 16 16 C 1.54945 * 110.30886 * 287.80330 * 14 13 12 17 17 C 1.55303 * 100.94134 * 155.35934 * 16 14 13 18 18 C 1.54382 * 102.25536 * 325.86759 * 17 16 14 19 19 O 1.43240 * 107.58612 * 21.35509 * 18 17 16 20 20 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 21 21 C 1.36936 * 119.99838 * 84.99783 * 20 2 1 22 22 H 1.07999 * 120.00085 * 359.97438 * 21 20 2 23 23 C 1.38815 * 119.99824 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99954 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99939 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47287 * 59.99716 * 25 23 21 27 27 H 1.48506 * 109.47344 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47040 * 299.99712 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 33 33 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 34 34 H 1.09000 * 109.47346 * 300.00002 * 5 4 2 35 35 H 1.09007 * 109.46964 * 60.00529 * 5 4 2 36 36 H 0.97002 * 119.99959 * 0.02562 * 6 5 4 37 37 H 1.07994 * 125.37872 * 180.16307 * 11 10 9 38 38 H 1.08992 * 111.12769 * 273.28573 * 16 14 13 39 39 H 1.09010 * 111.12244 * 37.44367 * 16 14 13 40 40 H 1.09006 * 110.85115 * 207.67823 * 17 16 14 41 41 H 1.08998 * 111.01734 * 84.13997 * 17 16 14 42 42 H 1.08991 * 109.83526 * 261.84279 * 18 17 16 43 43 H 1.09003 * 109.82795 * 140.86737 * 18 17 16 44 44 H 0.96992 * 120.00062 * 265.00053 * 20 2 1 45 45 H 0.97001 * 119.99945 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5100 7 6 5.3740 -1.3387 2.7758 8 8 6.1605 -0.7972 2.0225 9 6 5.8653 -2.0327 3.9800 10 7 5.1063 -2.6726 4.9105 11 6 5.8953 -3.1627 5.8192 12 8 7.1639 -2.8529 5.5165 13 6 7.1630 -2.1488 4.3734 14 6 8.3693 -1.5934 3.6611 15 1 8.1045 -1.2938 2.6471 16 6 8.9501 -0.3899 4.4454 17 6 10.4266 -0.4094 3.9643 18 6 10.6929 -1.9195 3.7851 19 8 9.4246 -2.5676 3.6338 20 7 2.0184 -0.6906 -1.1962 21 6 2.1491 -0.0073 -2.3758 22 1 1.8918 1.0404 -2.4243 23 6 2.6114 -0.6618 -3.5093 24 7 2.9244 -1.9388 -3.4503 25 14 2.7904 0.2703 -5.1182 26 1 3.7464 1.3921 -4.9366 27 1 3.2993 -0.6480 -6.1684 28 1 1.4684 0.8081 -5.5284 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4258 35 1 3.8532 0.4370 1.3573 36 1 3.4259 -1.7350 3.1110 37 1 5.5786 -3.7263 6.6842 38 1 8.4565 0.5393 4.1611 39 1 8.8852 -0.5538 5.5211 40 1 11.0869 0.0137 4.7214 41 1 10.5362 0.1190 3.0173 42 1 11.2059 -2.3113 4.6632 43 1 11.3011 -2.0846 2.8957 44 1 2.2491 -1.6316 -1.1527 45 1 3.2478 -2.3960 -4.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001662960279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:20 Heat of formation + Delta-G solvation = -52.849423 kcal Electronic energy + Delta-G solvation = -27143.916385 eV Core-core repulsion = 23163.397069 eV Total energy + Delta-G solvation = -3980.519317 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.68570 -39.68730 -39.34286 -36.57720 -35.05676 -34.34997 -32.63578 -32.20873 -31.88752 -29.49152 -28.53403 -27.90130 -24.71423 -23.74319 -23.63406 -22.41042 -22.04862 -21.28986 -20.66140 -19.75111 -18.31149 -17.19940 -17.08978 -16.98676 -16.73212 -16.04072 -15.70491 -15.31935 -15.23754 -14.68330 -14.31829 -14.05649 -13.93702 -13.64061 -13.48972 -13.40458 -12.97985 -12.45817 -12.24788 -12.13588 -12.00664 -11.75422 -11.58728 -11.51713 -11.29866 -11.05814 -11.04197 -10.87901 -10.71199 -10.61938 -10.31125 -10.17238 -9.95936 -9.79537 -9.59555 -9.22672 -8.88055 -8.76951 -6.91274 -5.70787 -2.99592 0.82962 1.86028 2.27602 3.17470 3.26243 3.48424 3.48677 3.52838 3.53735 3.82253 4.10474 4.15381 4.52191 4.64381 4.71484 4.74276 4.87476 4.93074 5.24966 5.26790 5.33127 5.36233 5.43367 5.43869 5.50485 5.60127 5.61528 5.71408 5.78634 5.86668 5.91417 6.11219 6.20834 6.37462 6.42799 6.49540 6.58209 6.67969 6.73532 6.89967 7.09939 7.16669 7.65913 7.75133 8.25949 8.47451 9.58668 10.15603 10.50290 11.51761 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.002797 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.255339 B =10008.683483 C =11406.653779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.121 3.879 6 N -0.706 5.706 7 C 0.596 3.404 8 O -0.532 6.532 9 C -0.056 4.056 10 N -0.463 5.463 11 C 0.177 3.823 12 O -0.189 6.189 13 C 0.040 3.960 14 C 0.153 3.847 15 H 0.140 0.860 16 C -0.147 4.147 17 C -0.154 4.154 18 C 0.050 3.950 19 O -0.374 6.374 20 N -0.724 5.724 21 C -0.238 4.238 22 H 0.069 0.931 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.292 1.292 28 H -0.287 1.287 29 H 0.035 0.965 30 H 0.046 0.954 31 H 0.054 0.946 32 H 0.063 0.937 33 H 0.067 0.933 34 H 0.088 0.912 35 H 0.067 0.933 36 H 0.405 0.595 37 H 0.256 0.744 38 H 0.095 0.905 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.747 0.223 23.372 25.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C -0.001 4.001 6 N -0.356 5.356 7 C 0.380 3.620 8 O -0.409 6.409 9 C -0.176 4.176 10 N -0.192 5.192 11 C -0.051 4.051 12 O -0.074 6.074 13 C -0.017 4.017 14 C 0.096 3.904 15 H 0.157 0.843 16 C -0.184 4.184 17 C -0.192 4.192 18 C -0.027 4.027 19 O -0.293 6.293 20 N -0.366 5.366 21 C -0.370 4.370 22 H 0.087 0.913 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.073 0.927 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.106 0.894 35 H 0.085 0.915 36 H 0.240 0.760 37 H 0.272 0.728 38 H 0.114 0.886 39 H 0.099 0.901 40 H 0.105 0.895 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.093 0.907 44 H 0.217 0.783 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 10.642 0.461 22.640 25.020 hybrid contribution 0.383 -0.048 -0.367 0.533 sum 11.025 0.413 22.272 24.855 Atomic orbital electron populations 1.22425 0.99127 1.00865 0.99944 1.20146 0.91887 0.95546 0.85979 0.93268 1.22065 0.93694 1.01989 0.99405 1.21553 0.94675 0.97174 0.86729 1.45907 1.06585 1.55749 1.27351 1.16685 0.83110 0.79521 0.82656 1.90783 1.55293 1.46324 1.48532 1.21607 0.89981 1.06887 0.99166 1.70778 1.34144 1.11518 1.02777 1.28073 0.75923 1.00356 1.00799 1.84401 1.33154 1.54829 1.35063 1.23619 0.96854 0.95559 0.85697 1.22010 0.82406 0.86739 0.99273 0.84302 1.23315 0.95675 0.98709 1.00727 1.23145 0.96117 0.96782 1.03113 1.23191 0.85843 0.91828 1.01791 1.88496 1.14346 1.32000 1.94458 1.42455 1.78098 1.10674 1.05346 1.19173 1.36618 0.93806 0.87355 0.91278 1.24723 1.02186 0.95942 0.98015 1.69645 1.50830 1.08655 1.28944 0.86297 0.77696 0.78652 0.83708 1.21268 1.21771 1.21393 0.94561 0.93503 0.92729 0.91817 0.91478 0.89371 0.91487 0.75972 0.72831 0.88597 0.90112 0.89498 0.89617 0.91055 0.90652 0.78265 0.93513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.89 9.49 37.16 0.35 -2.54 16 2 C 0.17 3.38 2.89 -67.93 -0.20 3.18 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -2.09 4.87 -26.74 -0.13 -2.22 16 5 C 0.12 2.06 5.56 -4.04 -0.02 2.04 16 6 N -0.71 -10.67 5.55 -61.38 -0.34 -11.01 16 7 C 0.60 9.73 7.81 -12.52 -0.10 9.63 16 8 O -0.53 -10.00 14.56 5.26 0.08 -9.93 16 9 C -0.06 -0.79 6.99 -83.02 -0.58 -1.37 16 10 N -0.46 -5.61 11.06 -11.48 -0.13 -5.73 16 11 C 0.18 1.56 13.19 51.96 0.69 2.25 16 12 O -0.19 -2.09 10.73 6.49 0.07 -2.02 16 13 C 0.04 0.52 6.37 -35.08 -0.22 0.29 16 14 C 0.15 1.89 3.70 -26.86 -0.10 1.79 16 15 H 0.14 1.99 5.83 -51.93 -0.30 1.68 16 16 C -0.15 -1.32 6.56 -24.48 -0.16 -1.48 16 17 C -0.15 -1.11 7.02 -24.79 -0.17 -1.28 16 18 C 0.05 0.43 7.79 37.88 0.30 0.72 16 19 O -0.37 -4.72 11.02 -35.23 -0.39 -5.11 16 20 N -0.72 -17.86 4.57 -53.43 -0.24 -18.10 16 21 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.37 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.47 13.06 55.49 0.72 -27.75 16 25 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 26 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 29 H 0.04 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.09 1.84 7.75 -51.93 -0.40 1.44 16 35 H 0.07 1.16 8.14 -51.92 -0.42 0.74 16 36 H 0.41 5.31 8.20 -40.82 -0.33 4.97 16 37 H 0.26 0.78 8.06 -52.49 -0.42 0.35 16 38 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 39 H 0.08 0.67 8.05 -51.92 -0.42 0.25 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.38 10.14 7.80 -40.82 -0.32 9.82 16 45 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 378.59 15.07 5.71 5.71 Total: -1.00 -34.30 378.59 -6.96 -41.26 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -6.82 Total: 11.21 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: -0.60 Total: 3.79 kcal Atomic # 7 Polarization: -62.61 SS G_CDS: 0.01 Total: -62.60 kcal Atomic # 8 Polarization: -16.81 SS G_CDS: -0.24 Total: -17.06 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.30 -6.96 -41.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662960279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.594 kcal (2) G-P(sol) polarization free energy of solvation -34.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.256 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds