Wall clock time and date at job start Tue Mar 31 2020 14:14:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.52992 * 109.47482 * 120.00154 * 2 1 3 5 5 C 1.52997 * 109.47448 * 184.99813 * 4 2 1 6 6 N 1.46500 * 109.47442 * 179.97438 * 5 4 2 7 7 C 1.34776 * 120.00522 * 180.02562 * 6 5 4 8 8 O 1.21615 * 119.99583 * 0.02562 * 7 6 5 9 9 C 1.47420 * 120.00181 * 179.97438 * 7 6 5 10 10 N 1.36063 * 126.44812 * 359.69224 * 9 7 6 11 11 C 1.29941 * 108.47592 * 179.81977 * 10 9 7 12 12 O 1.34056 * 109.24140 * 0.44538 * 11 10 9 13 13 C 1.34259 * 108.22551 * 359.72071 * 12 11 10 14 14 C 1.50701 * 126.52209 * 180.02562 * 13 12 11 15 15 H 1.08997 * 110.27203 * 165.61192 * 14 13 12 16 16 C 1.54945 * 110.30886 * 287.80330 * 14 13 12 17 17 C 1.55303 * 100.94134 * 155.35934 * 16 14 13 18 18 C 1.54382 * 102.25536 * 325.86759 * 17 16 14 19 19 O 1.43240 * 107.58612 * 21.35509 * 18 17 16 20 20 N 1.46506 * 109.47289 * 240.00326 * 2 1 3 21 21 C 1.36936 * 119.99838 * 84.99783 * 20 2 1 22 22 H 1.07999 * 120.00085 * 359.97438 * 21 20 2 23 23 C 1.38815 * 119.99824 * 180.02562 * 21 20 2 24 24 N 1.31616 * 119.99954 * 359.97438 * 23 21 20 25 25 Si 1.86794 * 119.99939 * 180.02562 * 23 21 20 26 26 H 1.48503 * 109.47287 * 59.99716 * 25 23 21 27 27 H 1.48506 * 109.47344 * 179.97438 * 25 23 21 28 28 H 1.48500 * 109.47040 * 299.99712 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.09001 * 109.47563 * 305.00337 * 4 2 1 33 33 H 1.09004 * 109.47313 * 64.99993 * 4 2 1 34 34 H 1.09000 * 109.47346 * 300.00002 * 5 4 2 35 35 H 1.09007 * 109.46964 * 60.00529 * 5 4 2 36 36 H 0.97002 * 119.99959 * 0.02562 * 6 5 4 37 37 H 1.07994 * 125.37872 * 180.16307 * 11 10 9 38 38 H 1.08992 * 111.12769 * 273.28573 * 16 14 13 39 39 H 1.09010 * 111.12244 * 37.44367 * 16 14 13 40 40 H 1.09006 * 110.85115 * 207.67823 * 17 16 14 41 41 H 1.08998 * 111.01734 * 84.13997 * 17 16 14 42 42 H 1.08991 * 109.83526 * 261.84279 * 18 17 16 43 43 H 1.09003 * 109.82795 * 140.86737 * 18 17 16 44 44 H 0.96992 * 120.00062 * 265.00053 * 20 2 1 45 45 H 0.97001 * 119.99945 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2491 5 6 3.5648 -0.6133 1.3135 6 7 4.0532 -1.3034 2.5100 7 6 5.3740 -1.3387 2.7758 8 8 6.1605 -0.7972 2.0225 9 6 5.8653 -2.0327 3.9800 10 7 5.1063 -2.6726 4.9105 11 6 5.8953 -3.1627 5.8192 12 8 7.1639 -2.8529 5.5165 13 6 7.1630 -2.1488 4.3734 14 6 8.3693 -1.5934 3.6611 15 1 8.1045 -1.2938 2.6471 16 6 8.9501 -0.3899 4.4454 17 6 10.4266 -0.4094 3.9643 18 6 10.6929 -1.9195 3.7851 19 8 9.4246 -2.5676 3.6338 20 7 2.0184 -0.6906 -1.1962 21 6 2.1491 -0.0073 -2.3758 22 1 1.8918 1.0404 -2.4243 23 6 2.6114 -0.6618 -3.5093 24 7 2.9244 -1.9388 -3.4503 25 14 2.7904 0.2703 -5.1182 26 1 3.7464 1.3921 -4.9366 27 1 3.2993 -0.6480 -6.1684 28 1 1.4684 0.8081 -5.5284 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6054 -0.2618 2.1369 33 1 1.7517 -1.7715 1.2055 34 1 3.9995 -1.0728 0.4258 35 1 3.8532 0.4370 1.3573 36 1 3.4259 -1.7350 3.1110 37 1 5.5786 -3.7263 6.6842 38 1 8.4565 0.5393 4.1611 39 1 8.8852 -0.5538 5.5211 40 1 11.0869 0.0137 4.7214 41 1 10.5362 0.1190 3.0173 42 1 11.2059 -2.3113 4.6632 43 1 11.3011 -2.0846 2.8957 44 1 2.2491 -1.6316 -1.1527 45 1 3.2478 -2.3960 -4.2423 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001662960279.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:20 Heat of formation + Delta-G solvation = -80.618486 kcal Electronic energy + Delta-G solvation = -27145.120542 eV Core-core repulsion = 23163.397069 eV Total energy + Delta-G solvation = -3981.723473 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -44.56919 -40.74210 -40.38706 -38.16532 -36.07852 -35.79089 -34.12058 -33.44614 -32.69679 -31.15842 -29.90450 -29.01875 -26.07607 -25.43237 -24.52109 -23.68910 -22.71276 -22.27425 -21.90644 -21.20757 -19.48693 -19.10683 -17.94315 -17.88585 -17.62445 -17.18998 -16.90551 -16.65040 -16.36104 -16.08118 -15.63737 -15.38192 -15.25682 -14.91735 -14.64490 -14.53792 -14.21396 -14.12721 -13.57061 -13.24702 -12.99042 -12.88064 -12.78298 -12.63729 -12.52297 -12.41682 -12.32215 -12.25849 -12.13902 -12.04150 -11.87806 -11.67561 -11.59502 -11.27729 -10.91883 -10.78387 -10.31944 -9.98711 -8.97024 -7.90837 -5.18025 -0.15575 0.98386 1.40865 1.46829 1.50039 1.55563 2.02052 2.10751 2.58532 2.64634 3.01061 3.33258 3.38329 3.43122 3.70997 3.86044 3.91100 3.97750 3.99929 4.11633 4.21469 4.24004 4.31911 4.36105 4.51109 4.66620 4.71065 4.74121 4.78246 4.85564 4.88018 4.90569 5.01069 5.08344 5.11682 5.14017 5.20253 5.35555 5.39706 5.55156 5.62022 5.79450 6.20948 6.31542 6.51829 7.02590 7.37501 8.15273 8.36798 9.32593 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.013509 B = 0.002797 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.255339 B =10008.683483 C =11406.653779 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.166 3.834 3 H 0.046 0.954 4 C -0.117 4.117 5 C 0.133 3.867 6 N -0.696 5.696 7 C 0.589 3.411 8 O -0.567 6.567 9 C -0.077 4.077 10 N -0.488 5.488 11 C 0.206 3.794 12 O -0.189 6.189 13 C 0.036 3.964 14 C 0.147 3.853 15 H 0.110 0.890 16 C -0.140 4.140 17 C -0.146 4.146 18 C 0.040 3.960 19 O -0.399 6.399 20 N -0.736 5.736 21 C -0.234 4.234 22 H 0.075 0.925 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.968 3.032 26 H -0.280 1.280 27 H -0.298 1.298 28 H -0.277 1.277 29 H 0.075 0.925 30 H 0.043 0.957 31 H 0.034 0.966 32 H 0.104 0.896 33 H 0.068 0.932 34 H 0.042 0.958 35 H 0.062 0.938 36 H 0.417 0.583 37 H 0.312 0.688 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.115 0.885 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.371 0.629 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.513 0.804 26.226 28.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.057 3.943 3 H 0.064 0.936 4 C -0.155 4.155 5 C 0.009 3.991 6 N -0.346 5.346 7 C 0.376 3.624 8 O -0.447 6.447 9 C -0.196 4.196 10 N -0.217 5.217 11 C -0.022 4.022 12 O -0.075 6.075 13 C -0.022 4.022 14 C 0.089 3.911 15 H 0.127 0.873 16 C -0.178 4.178 17 C -0.183 4.183 18 C -0.036 4.036 19 O -0.319 6.319 20 N -0.376 5.376 21 C -0.366 4.366 22 H 0.093 0.907 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.797 3.203 26 H -0.207 1.207 27 H -0.225 1.225 28 H -0.203 1.203 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.123 0.877 33 H 0.087 0.913 34 H 0.060 0.940 35 H 0.080 0.920 36 H 0.255 0.745 37 H 0.327 0.673 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.133 0.867 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.203 0.797 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 10.357 1.079 25.537 27.579 hybrid contribution 0.460 -0.256 -1.104 1.223 sum 10.817 0.823 24.434 26.734 Atomic orbital electron populations 1.22265 0.97115 1.01009 1.00935 1.20440 0.93158 0.95260 0.85418 0.93560 1.21924 0.92356 1.02060 0.99167 1.21240 0.95545 0.96442 0.85831 1.45732 1.06641 1.55479 1.26748 1.17078 0.83042 0.79167 0.83157 1.90763 1.56111 1.47840 1.49961 1.21288 0.90842 1.08279 0.99238 1.70752 1.34675 1.12833 1.03423 1.29387 0.74541 0.97767 1.00542 1.84431 1.34290 1.54570 1.34204 1.23663 0.96619 0.95582 0.86299 1.21884 0.82658 0.88106 0.98464 0.87294 1.23304 0.96553 0.97061 1.00883 1.23159 0.95281 0.95925 1.03956 1.23460 0.84471 0.92733 1.02935 1.88458 1.15708 1.33113 1.94640 1.42663 1.78402 1.10230 1.06343 1.19575 1.34473 0.94119 0.88390 0.90684 1.25505 1.03311 0.96845 1.01393 1.69811 1.52894 1.10236 1.29272 0.85288 0.77930 0.77307 0.79736 1.20672 1.22495 1.20301 0.90575 0.93773 0.94692 0.87743 0.91291 0.93973 0.92013 0.74546 0.67319 0.88736 0.88956 0.86675 0.89704 0.89213 0.90160 0.79727 0.94316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.12 9.49 71.98 0.68 -4.44 16 2 C 0.17 6.27 2.89 44.99 0.13 6.40 16 3 H 0.05 1.79 8.08 -2.39 -0.02 1.77 16 4 C -0.12 -3.52 4.87 30.59 0.15 -3.38 16 5 C 0.13 4.62 5.56 86.38 0.48 5.10 16 6 N -0.70 -21.24 5.55 -466.37 -2.59 -23.83 16 7 C 0.59 19.98 7.81 86.66 0.68 20.66 16 8 O -0.57 -22.74 14.56 -4.08 -0.06 -22.80 16 9 C -0.08 -2.20 6.99 40.41 0.28 -1.91 16 10 N -0.49 -11.03 11.06 -305.14 -3.37 -14.40 16 11 C 0.21 3.00 13.19 130.52 1.72 4.72 16 12 O -0.19 -3.81 10.73 0.31 0.00 -3.81 16 13 C 0.04 0.94 6.37 25.19 0.16 1.10 16 14 C 0.15 3.72 3.70 30.51 0.11 3.84 16 15 H 0.11 3.40 5.83 -2.39 -0.01 3.39 16 16 C -0.14 -2.45 6.56 32.05 0.21 -2.24 16 17 C -0.15 -1.91 7.02 31.85 0.22 -1.69 16 18 C 0.04 0.65 7.79 72.45 0.56 1.21 16 19 O -0.40 -10.19 11.02 -148.98 -1.64 -11.84 16 20 N -0.74 -36.97 4.57 -322.95 -1.48 -38.45 16 21 C -0.23 -13.11 9.93 84.03 0.83 -12.28 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 23 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 24 N -0.97 -61.23 13.06 21.65 0.28 -60.95 16 25 Si 0.97 47.55 29.55 68.60 2.03 49.58 16 26 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.30 -14.87 7.11 99.48 0.71 -14.16 16 28 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 29 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 32 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 33 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 34 H 0.04 1.87 7.75 -2.39 -0.02 1.85 16 35 H 0.06 2.19 8.14 -2.38 -0.02 2.18 16 36 H 0.42 10.58 8.20 -92.71 -0.76 9.82 16 37 H 0.31 0.28 8.06 -2.91 -0.02 0.26 16 38 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.09 1.38 8.05 -2.38 -0.02 1.36 16 40 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 41 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 43 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.37 20.29 7.80 -92.71 -0.72 19.57 16 45 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 Total: -1.00 -78.38 378.59 -0.60 -78.97 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: -0.46 Total: 34.59 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: 6.70 Total: 12.93 kcal Atomic # 7 Polarization: -130.47 SS G_CDS: -7.16 Total: -137.63 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -1.70 Total: -38.44 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 2.03 Total: 49.58 kcal Total: -78.38 -0.60 -78.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001662960279.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.646 kcal (2) G-P(sol) polarization free energy of solvation -78.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds