Wall clock time and date at job start Tue Mar 31 2020 14:28:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46936 * 2 1 4 4 N 1.46498 * 109.47018 * 240.00022 * 2 1 3 5 5 C 1.34780 * 120.00205 * 85.00010 * 4 2 1 6 6 O 1.21611 * 119.99590 * 359.97438 * 5 4 2 7 7 C 1.47377 * 120.00085 * 179.97438 * 5 4 2 8 8 C 1.47022 * 127.19112 * 180.02562 * 7 5 4 9 9 C 1.34175 * 105.95265 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12564 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.90693 * 359.76214 * 10 9 8 12 12 C 1.50700 * 109.47395 * 119.99614 * 2 1 3 13 13 O 1.21280 * 119.99862 * 120.00202 * 12 2 1 14 14 N 1.34777 * 120.00106 * 300.00198 * 12 2 1 15 15 C 1.46498 * 119.99743 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.53009 * 109.47247 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.47076 * 180.02562 * 17 16 15 19 19 C 1.46500 * 120.00416 * 89.99980 * 18 17 16 20 20 C 1.36938 * 119.99902 * 270.00142 * 18 17 16 21 21 H 1.08002 * 120.00127 * 23.04499 * 20 18 17 22 22 C 1.38817 * 120.00192 * 203.04895 * 20 18 17 23 23 N 1.31623 * 119.99705 * 12.93361 * 22 20 18 24 24 Si 1.86799 * 120.00131 * 192.93526 * 22 20 18 25 25 H 1.48499 * 109.46970 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46998 * 119.99808 * 24 22 20 27 27 H 1.48502 * 109.47053 * 239.99751 * 24 22 20 28 28 H 1.09003 * 109.47260 * 299.99860 * 1 2 3 29 29 H 1.09005 * 109.46577 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47410 * 60.00097 * 1 2 3 31 31 H 0.97001 * 119.99554 * 264.99187 * 4 2 1 32 32 H 1.08001 * 127.02364 * 359.97438 * 8 7 5 33 33 H 1.07998 * 125.43478 * 179.97438 * 9 8 7 34 34 H 1.08003 * 125.80090 * 180.26487 * 11 10 9 35 35 H 0.96999 * 120.00158 * 359.97438 * 14 12 2 36 36 H 1.09003 * 109.47135 * 299.99558 * 15 14 12 37 37 H 1.08992 * 109.47793 * 60.00361 * 15 14 12 38 38 H 1.08998 * 109.47362 * 299.99739 * 16 15 14 39 39 H 1.09002 * 109.47196 * 59.99903 * 16 15 14 40 40 H 1.08998 * 109.46870 * 300.00216 * 17 16 15 41 41 H 1.08995 * 109.46630 * 59.99752 * 17 16 15 42 42 H 1.09000 * 109.46827 * 95.11837 * 19 18 17 43 43 H 1.08996 * 109.47608 * 215.11768 * 19 18 17 44 44 H 1.08996 * 109.47015 * 335.12463 * 19 18 17 45 45 H 0.96999 * 119.99886 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8574 1.1616 -2.4119 7 6 2.6388 -0.7129 -3.5604 8 6 2.8394 -0.1383 -4.8987 9 6 3.2970 -1.1399 -5.6653 10 8 3.3913 -2.2541 -4.9229 11 6 3.0093 -2.0217 -3.6634 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6963 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.1948 -0.9407 3.6507 16 6 1.6844 -0.2197 4.8999 17 6 2.1935 -0.9416 6.1493 18 7 1.7042 -0.2517 7.3454 19 6 0.4237 -0.6391 7.9424 20 6 2.4439 0.7555 7.9055 21 1 3.1634 1.2943 7.3067 22 6 2.2689 1.0841 9.2428 23 7 1.5925 0.2795 10.0350 24 14 2.9935 2.6679 9.9180 25 1 3.7022 3.3907 8.8315 26 1 1.9029 3.5232 10.4515 27 1 3.9507 2.3492 11.0078 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6317 -1.1525 32 1 2.6558 0.8817 -5.2027 33 1 3.5493 -1.0620 -6.7125 34 1 2.9941 -2.7475 -2.8637 35 1 1.1494 0.5390 2.5436 36 1 1.8310 -1.9682 3.6506 37 1 3.2847 -0.9411 3.6510 38 1 2.0477 0.8079 4.9004 39 1 0.5944 -0.2197 4.8996 40 1 1.8298 -1.9692 6.1487 41 1 3.2834 -0.9420 6.1498 42 1 0.5992 -1.3540 8.7463 43 1 -0.0722 0.2446 8.3438 44 1 -0.2085 -1.0963 7.1812 45 1 1.4706 0.5089 10.9696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001689804099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:53 Heat of formation + Delta-G solvation = -38.694959 kcal Electronic energy + Delta-G solvation = -26093.202516 eV Core-core repulsion = 22113.296983 eV Total energy + Delta-G solvation = -3979.905533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.96055 -40.53626 -39.18816 -36.39944 -35.28875 -34.88738 -33.39859 -32.28165 -31.33296 -30.09043 -29.48849 -26.10710 -25.70235 -24.94528 -23.40458 -21.98292 -21.86288 -20.82836 -20.47274 -20.07424 -19.02884 -17.24697 -16.94611 -16.68204 -16.56472 -16.16014 -15.82052 -15.45716 -15.13260 -15.00823 -14.68501 -14.38203 -13.89287 -13.79630 -13.35245 -13.32887 -13.16565 -12.86858 -12.74717 -12.71590 -12.66109 -12.00133 -11.74374 -11.48668 -11.06802 -10.83292 -10.82129 -10.50862 -10.42426 -10.25394 -10.22647 -10.07244 -9.87413 -9.82988 -9.53172 -9.24787 -9.13160 -8.56811 -6.76235 -5.73889 -3.21165 0.91603 1.65341 2.37706 2.43162 2.57219 2.99367 3.20075 3.36279 3.43696 3.45564 4.14830 4.22990 4.38386 4.48415 4.62376 4.71045 4.80591 5.05087 5.15523 5.22554 5.25974 5.38016 5.40750 5.41804 5.48670 5.73801 5.77313 5.82971 5.84341 5.96849 6.04026 6.08666 6.36460 6.43167 6.49740 6.71380 6.72182 6.89696 7.11991 7.32754 7.35429 7.71582 7.79429 7.84244 7.98102 8.38579 9.22400 9.85892 10.34676 11.30928 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028905 B = 0.001776 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.446377 B =15763.723049 C =15995.857520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.125 3.875 3 H 0.117 0.883 4 N -0.709 5.709 5 C 0.592 3.408 6 O -0.535 6.535 7 C -0.237 4.237 8 C -0.164 4.164 9 C -0.041 4.041 10 O -0.174 6.174 11 C 0.026 3.974 12 C 0.509 3.491 13 O -0.542 6.542 14 N -0.717 5.717 15 C 0.120 3.880 16 C -0.151 4.151 17 C 0.155 3.845 18 N -0.603 5.603 19 C 0.162 3.838 20 C -0.255 4.255 21 H 0.068 0.932 22 C 0.001 3.999 23 N -0.907 5.907 24 Si 0.904 3.096 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.290 1.290 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.074 0.926 31 H 0.408 0.592 32 H 0.160 0.840 33 H 0.210 0.790 34 H 0.213 0.787 35 H 0.403 0.597 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.067 0.933 39 H 0.060 0.940 40 H 0.038 0.962 41 H 0.049 0.951 42 H 0.031 0.969 43 H 0.040 0.960 44 H -0.003 1.003 45 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.137 -4.369 -29.193 29.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.017 3.983 3 H 0.134 0.866 4 N -0.363 5.363 5 C 0.380 3.620 6 O -0.413 6.413 7 C -0.241 4.241 8 C -0.184 4.184 9 C -0.107 4.107 10 O -0.068 6.068 11 C -0.044 4.044 12 C 0.293 3.707 13 O -0.420 6.420 14 N -0.368 5.368 15 C -0.004 4.004 16 C -0.192 4.192 17 C 0.027 3.973 18 N -0.325 5.325 19 C 0.018 3.982 20 C -0.385 4.385 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.553 5.553 24 Si 0.734 3.266 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.093 0.907 31 H 0.244 0.756 32 H 0.178 0.822 33 H 0.226 0.774 34 H 0.230 0.770 35 H 0.238 0.762 36 H 0.084 0.916 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.049 0.951 43 H 0.058 0.942 44 H 0.016 0.984 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.786 -4.489 -29.179 29.533 hybrid contribution 0.114 1.046 0.677 1.251 sum -0.671 -3.443 -28.502 28.717 Atomic orbital electron populations 1.22146 0.92521 1.03309 1.03878 1.20793 0.95869 0.98248 0.83393 0.86554 1.45565 1.67701 1.14658 1.08379 1.17228 0.77000 0.86037 0.81769 1.90797 1.50282 1.15316 1.84894 1.21460 1.12202 0.94680 0.95762 1.22792 1.03632 1.00981 0.90968 1.23985 1.05528 0.83324 0.97848 1.83813 1.66485 1.36784 1.19760 1.24554 0.97663 0.96784 0.85411 1.20493 0.80446 0.84796 0.84926 1.90688 1.38130 1.26488 1.86679 1.46085 1.53069 1.32049 1.05628 1.21519 0.99442 0.96362 0.83027 1.22555 1.01152 1.01090 0.94434 1.20588 0.97454 0.93452 0.85793 1.43896 1.20021 1.40227 1.28393 1.20788 0.84983 0.98800 0.93662 1.19224 1.18506 1.08530 0.92250 0.91382 1.25041 1.00132 0.98737 0.95825 1.70081 1.44913 1.35580 1.04684 0.86196 0.78373 0.83242 0.78797 1.20315 1.21633 1.21711 0.90584 0.91626 0.90680 0.75566 0.82197 0.77375 0.77044 0.76215 0.91555 0.91431 0.91443 0.92122 0.94413 0.93270 0.95078 0.94161 0.98421 0.93797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 9.38 37.16 0.35 -0.92 16 2 C 0.13 1.21 2.98 -69.08 -0.21 1.00 16 3 H 0.12 1.16 7.58 -51.93 -0.39 0.77 16 4 N -0.71 -6.76 4.94 -56.02 -0.28 -7.04 16 5 C 0.59 6.54 7.78 -12.54 -0.10 6.44 16 6 O -0.54 -7.60 16.65 5.27 0.09 -7.51 16 7 C -0.24 -2.16 6.31 -103.28 -0.65 -2.81 16 8 C -0.16 -1.31 11.01 -37.45 -0.41 -1.72 16 9 C -0.04 -0.24 12.03 29.30 0.35 0.11 16 10 O -0.17 -1.22 10.52 7.65 0.08 -1.14 16 11 C 0.03 0.18 11.61 30.07 0.35 0.53 16 12 C 0.51 5.90 7.22 -10.98 -0.08 5.82 16 13 O -0.54 -7.86 15.84 5.56 0.09 -7.78 16 14 N -0.72 -7.91 5.45 -60.30 -0.33 -8.24 16 15 C 0.12 1.58 5.67 -4.04 -0.02 1.56 16 16 C -0.15 -2.34 5.65 -26.73 -0.15 -2.50 16 17 C 0.16 3.02 5.64 -4.04 -0.02 3.00 16 18 N -0.60 -14.83 2.92 -181.12 -0.53 -15.36 16 19 C 0.16 3.93 8.98 59.85 0.54 4.47 16 20 C -0.26 -6.92 9.65 -15.06 -0.15 -7.06 16 21 H 0.07 1.80 7.86 -52.49 -0.41 1.39 16 22 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 23 N -0.91 -26.41 10.71 55.49 0.59 -25.82 16 24 Si 0.90 21.70 29.57 -169.99 -5.03 16.68 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 28 H 0.08 0.50 7.57 -51.93 -0.39 0.10 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.41 3.36 6.76 -40.82 -0.28 3.08 16 32 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 33 H 0.21 0.40 8.06 -52.49 -0.42 -0.03 16 34 H 0.21 0.74 7.47 -52.48 -0.39 0.35 16 35 H 0.40 3.59 7.89 -40.82 -0.32 3.27 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 41 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 42 H 0.03 0.82 7.34 -51.93 -0.38 0.44 16 43 H 0.04 1.04 7.34 -51.93 -0.38 0.66 16 44 H 0.00 -0.06 8.03 -51.93 -0.42 -0.48 16 45 H 0.25 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 384.19 15.07 5.79 5.79 Total: -1.00 -34.95 384.19 -6.54 -41.49 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.72 Total: 1.06 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.29 Total: 7.86 kcal Atomic # 7 Polarization: -55.91 SS G_CDS: -0.54 Total: -56.45 kcal Atomic # 8 Polarization: -16.68 SS G_CDS: 0.26 Total: -16.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.68 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.95 -6.54 -41.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689804099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.793 kcal (2) G-P(sol) polarization free energy of solvation -34.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.160 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.488 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.695 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds