Wall clock time and date at job start Tue Mar 31 2020 14:28:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46936 * 2 1 4 4 N 1.46498 * 109.47018 * 240.00022 * 2 1 3 5 5 C 1.34780 * 120.00205 * 85.00010 * 4 2 1 6 6 O 1.21611 * 119.99590 * 359.97438 * 5 4 2 7 7 C 1.47377 * 120.00085 * 179.97438 * 5 4 2 8 8 C 1.47022 * 127.19112 * 180.02562 * 7 5 4 9 9 C 1.34175 * 105.95265 * 179.97438 * 8 7 5 10 10 O 1.34216 * 109.12564 * 359.97438 * 9 8 7 11 11 C 1.33651 * 110.90693 * 359.76214 * 10 9 8 12 12 C 1.50700 * 109.47395 * 119.99614 * 2 1 3 13 13 O 1.21280 * 119.99862 * 120.00202 * 12 2 1 14 14 N 1.34777 * 120.00106 * 300.00198 * 12 2 1 15 15 C 1.46498 * 119.99743 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46881 * 180.02562 * 15 14 12 17 17 C 1.53009 * 109.47247 * 179.97438 * 16 15 14 18 18 N 1.46494 * 109.47076 * 180.02562 * 17 16 15 19 19 C 1.46500 * 120.00416 * 89.99980 * 18 17 16 20 20 C 1.36938 * 119.99902 * 270.00142 * 18 17 16 21 21 H 1.08002 * 120.00127 * 23.04499 * 20 18 17 22 22 C 1.38817 * 120.00192 * 203.04895 * 20 18 17 23 23 N 1.31623 * 119.99705 * 12.93361 * 22 20 18 24 24 Si 1.86799 * 120.00131 * 192.93526 * 22 20 18 25 25 H 1.48499 * 109.46970 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.46998 * 119.99808 * 24 22 20 27 27 H 1.48502 * 109.47053 * 239.99751 * 24 22 20 28 28 H 1.09003 * 109.47260 * 299.99860 * 1 2 3 29 29 H 1.09005 * 109.46577 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47410 * 60.00097 * 1 2 3 31 31 H 0.97001 * 119.99554 * 264.99187 * 4 2 1 32 32 H 1.08001 * 127.02364 * 359.97438 * 8 7 5 33 33 H 1.07998 * 125.43478 * 179.97438 * 9 8 7 34 34 H 1.08003 * 125.80090 * 180.26487 * 11 10 9 35 35 H 0.96999 * 120.00158 * 359.97438 * 14 12 2 36 36 H 1.09003 * 109.47135 * 299.99558 * 15 14 12 37 37 H 1.08992 * 109.47793 * 60.00361 * 15 14 12 38 38 H 1.08998 * 109.47362 * 299.99739 * 16 15 14 39 39 H 1.09002 * 109.47196 * 59.99903 * 16 15 14 40 40 H 1.08998 * 109.46870 * 300.00216 * 17 16 15 41 41 H 1.08995 * 109.46630 * 59.99752 * 17 16 15 42 42 H 1.09000 * 109.46827 * 95.11837 * 19 18 17 43 43 H 1.08996 * 109.47608 * 215.11768 * 19 18 17 44 44 H 1.08996 * 109.47015 * 335.12463 * 19 18 17 45 45 H 0.96999 * 119.99886 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1470 -0.0183 -2.3572 6 8 1.8574 1.1616 -2.4119 7 6 2.6388 -0.7129 -3.5604 8 6 2.8394 -0.1383 -4.8987 9 6 3.2970 -1.1399 -5.6653 10 8 3.3913 -2.2541 -4.9229 11 6 3.0093 -2.0217 -3.6634 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6963 1.1192 14 7 1.7068 -0.2498 2.4546 15 6 2.1948 -0.9407 3.6507 16 6 1.6844 -0.2197 4.8999 17 6 2.1935 -0.9416 6.1493 18 7 1.7042 -0.2517 7.3454 19 6 0.4237 -0.6391 7.9424 20 6 2.4439 0.7555 7.9055 21 1 3.1634 1.2943 7.3067 22 6 2.2689 1.0841 9.2428 23 7 1.5925 0.2795 10.0350 24 14 2.9935 2.6679 9.9180 25 1 3.7022 3.3907 8.8315 26 1 1.9029 3.5232 10.4515 27 1 3.9507 2.3492 11.0078 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 -0.8900 31 1 2.2491 -1.6317 -1.1525 32 1 2.6558 0.8817 -5.2027 33 1 3.5493 -1.0620 -6.7125 34 1 2.9941 -2.7475 -2.8637 35 1 1.1494 0.5390 2.5436 36 1 1.8310 -1.9682 3.6506 37 1 3.2847 -0.9411 3.6510 38 1 2.0477 0.8079 4.9004 39 1 0.5944 -0.2197 4.8996 40 1 1.8298 -1.9692 6.1487 41 1 3.2834 -0.9420 6.1498 42 1 0.5992 -1.3540 8.7463 43 1 -0.0722 0.2446 8.3438 44 1 -0.2085 -1.0963 7.1812 45 1 1.4706 0.5089 10.9696 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001689804099.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:52 Heat of formation + Delta-G solvation = -63.866221 kcal Electronic energy + Delta-G solvation = -26094.294024 eV Core-core repulsion = 22113.296983 eV Total energy + Delta-G solvation = -3980.997041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.49391 -41.43432 -40.10534 -37.97516 -36.36404 -36.04032 -34.09206 -33.76378 -32.38378 -31.32215 -30.26501 -27.94615 -27.15508 -25.87647 -24.38682 -23.29493 -22.41825 -22.15541 -21.24338 -21.21182 -19.70121 -18.71845 -18.02081 -17.76716 -17.15909 -17.03766 -16.88670 -16.75307 -16.20346 -15.99729 -15.68606 -15.56829 -15.27502 -14.76025 -14.63622 -14.52622 -14.45881 -13.85515 -13.75835 -13.43890 -13.35629 -13.28687 -12.99866 -12.81771 -12.72010 -12.60307 -12.48995 -12.27117 -12.05824 -11.82810 -11.46246 -11.30854 -11.06587 -10.87863 -10.63633 -10.35099 -10.13522 -9.76004 -8.76226 -7.81784 -5.30983 0.30902 1.11717 1.44376 1.46171 1.47902 1.57838 1.66360 2.05632 2.23991 2.34367 2.52179 3.31641 3.47963 3.61700 3.67345 3.76414 3.95632 4.03909 4.12088 4.15414 4.29301 4.49438 4.52421 4.62024 4.68345 4.73342 4.76964 4.81798 4.88093 4.94955 4.99396 5.14577 5.20081 5.26047 5.31667 5.32602 5.38305 5.53609 5.65435 5.73743 5.97405 6.34354 6.37087 6.42674 7.04205 7.07461 7.16960 7.89589 8.32542 9.21376 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.028905 B = 0.001776 C = 0.001750 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 968.446377 B =15763.723049 C =15995.857520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.129 3.871 3 H 0.113 0.887 4 N -0.703 5.703 5 C 0.591 3.409 6 O -0.576 6.576 7 C -0.271 4.271 8 C -0.195 4.195 9 C -0.024 4.024 10 O -0.178 6.178 11 C 0.044 3.956 12 C 0.514 3.486 13 O -0.571 6.571 14 N -0.709 5.709 15 C 0.132 3.868 16 C -0.130 4.130 17 C 0.149 3.851 18 N -0.621 5.621 19 C 0.176 3.824 20 C -0.259 4.259 21 H 0.072 0.928 22 C -0.057 4.057 23 N -0.941 5.941 24 Si 0.967 3.033 25 H -0.266 1.266 26 H -0.292 1.292 27 H -0.294 1.294 28 H 0.092 0.908 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.414 0.586 32 H 0.157 0.843 33 H 0.248 0.752 34 H 0.242 0.758 35 H 0.415 0.585 36 H 0.070 0.930 37 H 0.059 0.941 38 H 0.058 0.942 39 H 0.068 0.932 40 H 0.051 0.949 41 H 0.043 0.957 42 H 0.002 0.998 43 H 0.013 0.987 44 H 0.035 0.965 45 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.976 -4.785 -31.107 31.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.021 3.979 3 H 0.131 0.869 4 N -0.356 5.356 5 C 0.381 3.619 6 O -0.457 6.457 7 C -0.276 4.276 8 C -0.215 4.215 9 C -0.089 4.089 10 O -0.072 6.072 11 C -0.027 4.027 12 C 0.299 3.701 13 O -0.450 6.450 14 N -0.361 5.361 15 C 0.008 3.992 16 C -0.170 4.170 17 C 0.023 3.977 18 N -0.344 5.344 19 C 0.031 3.969 20 C -0.389 4.389 21 H 0.090 0.910 22 C -0.251 4.251 23 N -0.588 5.588 24 Si 0.795 3.205 25 H -0.190 1.190 26 H -0.219 1.219 27 H -0.221 1.221 28 H 0.111 0.889 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.253 0.747 32 H 0.175 0.825 33 H 0.264 0.736 34 H 0.258 0.742 35 H 0.252 0.748 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.020 0.980 43 H 0.032 0.968 44 H 0.053 0.947 45 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -0.624 -4.916 -31.134 31.526 hybrid contribution 0.096 1.093 1.189 1.618 sum -0.528 -3.823 -29.945 30.193 Atomic orbital electron populations 1.22117 0.90924 1.03785 1.04392 1.20790 0.96995 0.97655 0.82491 0.86910 1.45540 1.67186 1.14899 1.08012 1.17519 0.76295 0.85626 0.82458 1.90764 1.52353 1.17011 1.85566 1.21508 1.14441 0.96009 0.95628 1.22962 1.05539 1.01733 0.91237 1.24650 1.03268 0.82079 0.98899 1.83853 1.66230 1.37207 1.19895 1.25034 0.95491 0.96298 0.85841 1.20720 0.79747 0.84302 0.85304 1.90679 1.39422 1.27846 1.87077 1.45914 1.52990 1.32274 1.04906 1.21227 0.98872 0.96303 0.82786 1.22177 1.01343 1.00066 0.93436 1.20787 0.97259 0.94263 0.85404 1.44159 1.20122 1.40397 1.29743 1.20537 0.85443 0.97037 0.93914 1.19558 1.18051 1.08911 0.92374 0.91037 1.25801 1.01280 1.01693 0.96362 1.70241 1.46720 1.37205 1.04616 0.85208 0.77404 0.79782 0.78083 1.18981 1.21866 1.22125 0.88884 0.91126 0.91367 0.74747 0.82515 0.73636 0.74239 0.74765 0.91208 0.92244 0.92323 0.91362 0.93071 0.93894 0.97956 0.96768 0.94691 0.94360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.18 9.38 71.98 0.68 -1.50 16 2 C 0.13 2.33 2.98 44.25 0.13 2.46 16 3 H 0.11 2.18 7.58 -2.38 -0.02 2.16 16 4 N -0.70 -12.81 4.94 -449.41 -2.22 -15.03 16 5 C 0.59 13.03 7.78 86.65 0.67 13.71 16 6 O -0.58 -16.75 16.65 -4.06 -0.07 -16.81 16 7 C -0.27 -4.81 6.31 -18.99 -0.12 -4.93 16 8 C -0.20 -3.02 11.01 23.65 0.26 -2.76 16 9 C -0.02 -0.23 12.03 66.89 0.80 0.58 16 10 O -0.18 -2.09 10.52 4.47 0.05 -2.04 16 11 C 0.04 0.51 11.61 67.39 0.78 1.30 16 12 C 0.51 11.03 7.22 87.66 0.63 11.66 16 13 O -0.57 -15.67 15.84 -3.03 -0.05 -15.72 16 14 N -0.71 -14.08 5.45 -463.07 -2.52 -16.60 16 15 C 0.13 3.20 5.67 86.38 0.49 3.69 16 16 C -0.13 -3.74 5.65 30.60 0.17 -3.57 16 17 C 0.15 5.59 5.64 86.38 0.49 6.08 16 18 N -0.62 -30.15 2.92 -726.95 -2.12 -32.28 16 19 C 0.18 8.47 8.98 127.77 1.15 9.62 16 20 C -0.26 -13.92 9.65 84.03 0.81 -13.10 16 21 H 0.07 3.72 7.86 -2.91 -0.02 3.70 16 22 C -0.06 -3.15 5.10 84.86 0.43 -2.72 16 23 N -0.94 -55.66 10.71 21.65 0.23 -55.43 16 24 Si 0.97 44.79 29.57 68.60 2.03 46.82 16 25 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 27 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 28 H 0.09 0.99 7.57 -2.39 -0.02 0.97 16 29 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.41 6.30 6.76 -92.71 -0.63 5.67 16 32 H 0.16 2.38 8.06 -2.91 -0.02 2.36 16 33 H 0.25 0.16 8.06 -2.91 -0.02 0.13 16 34 H 0.24 1.08 7.47 -2.91 -0.02 1.06 16 35 H 0.42 6.34 7.89 -92.71 -0.73 5.61 16 36 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 38 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 39 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.05 1.78 8.07 -2.39 -0.02 1.76 16 41 H 0.04 1.65 8.04 -2.39 -0.02 1.63 16 42 H 0.00 0.11 7.34 -2.39 -0.02 0.10 16 43 H 0.01 0.72 7.34 -2.39 -0.02 0.70 16 44 H 0.03 1.39 8.03 -2.39 -0.02 1.37 16 45 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -76.10 384.19 2.36 -73.74 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -0.35 Total: 12.84 kcal Atomic # 6 Polarization: 13.13 SS G_CDS: 7.38 Total: 20.51 kcal Atomic # 7 Polarization: -112.70 SS G_CDS: -6.64 Total: -119.34 kcal Atomic # 8 Polarization: -34.50 SS G_CDS: -0.07 Total: -34.57 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -76.10 2.36 -73.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001689804099.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.870 kcal (2) G-P(sol) polarization free energy of solvation -76.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.736 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds