Wall clock time and date at job start Tue Mar 31 2020 14:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47140 * 2 1 4 4 C 1.50700 * 109.47232 * 120.00152 * 2 1 3 5 5 O 1.21276 * 120.00380 * 97.09205 * 4 2 1 6 6 N 1.34782 * 119.99711 * 277.09247 * 4 2 1 7 7 C 1.47022 * 125.64648 * 354.49411 * 6 4 2 8 8 C 1.54330 * 107.26929 * 178.97807 * 7 6 4 9 9 C 1.55163 * 102.94084 * 337.80894 * 8 7 6 10 10 H 1.09000 * 111.00406 * 277.38948 * 9 8 7 11 11 N 1.46496 * 111.00181 * 153.57646 * 9 8 7 12 12 C 1.36940 * 120.00150 * 89.30805 * 11 9 8 13 13 H 1.08000 * 119.99949 * 359.97438 * 12 11 9 14 14 C 1.38813 * 120.00095 * 179.97438 * 12 11 9 15 15 N 1.31625 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47031 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46694 * 119.99977 * 16 14 12 19 19 H 1.48501 * 109.47095 * 239.99806 * 16 14 12 20 20 C 1.47465 * 125.62850 * 174.50174 * 6 4 2 21 21 N 1.46905 * 109.46788 * 239.99671 * 2 1 3 22 22 C 1.46897 * 111.00120 * 314.45705 * 21 2 1 23 23 C 1.46899 * 110.99805 * 78.41096 * 21 2 1 24 24 C 1.53009 * 109.47275 * 76.98277 * 23 21 2 25 25 F 1.39894 * 109.46937 * 54.09631 * 24 23 21 26 26 F 1.39891 * 109.47275 * 174.10051 * 24 23 21 27 27 F 1.39907 * 109.46465 * 294.10199 * 24 23 21 28 28 H 1.09005 * 109.46561 * 306.04844 * 1 2 3 29 29 H 1.09000 * 109.47011 * 66.04195 * 1 2 3 30 30 H 1.08990 * 109.46867 * 186.05053 * 1 2 3 31 31 H 1.09004 * 109.88186 * 59.56344 * 7 6 4 32 32 H 1.08990 * 109.88648 * 298.39500 * 7 6 4 33 33 H 1.09000 * 110.71828 * 219.45081 * 8 7 6 34 34 H 1.08996 * 110.87213 * 96.24533 * 8 7 6 35 35 H 0.97003 * 120.00111 * 269.58124 * 11 9 8 36 36 H 0.96993 * 119.99677 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.35379 * 85.24812 * 20 6 4 38 38 H 1.08998 * 110.40122 * 322.91097 * 20 6 4 39 39 H 1.09001 * 109.46945 * 67.07453 * 22 21 2 40 40 H 1.08998 * 109.46725 * 187.08032 * 22 21 2 41 41 H 1.09005 * 109.47049 * 307.07948 * 22 21 2 42 42 H 1.09004 * 109.47050 * 196.97924 * 23 21 2 43 43 H 1.08995 * 109.47507 * 316.98025 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3568 -1.8773 1.1670 6 7 2.1211 -0.0490 2.4014 7 6 1.8723 1.3870 2.5954 8 6 2.0676 1.6872 4.0965 9 6 1.8621 0.2988 4.7582 10 1 0.8023 0.0855 4.8976 11 7 2.5842 0.2111 6.0298 12 6 1.9723 0.5965 7.1927 13 1 0.9575 0.9656 7.1723 14 6 2.6564 0.5129 8.3976 15 7 3.8933 0.0636 8.4224 16 14 1.8219 1.0394 9.9838 17 1 0.4428 1.5035 9.6872 18 1 1.7655 -0.1125 10.9193 19 1 2.5939 2.1450 10.6059 20 6 2.4841 -0.6461 3.7000 21 7 2.0196 -0.6926 -1.1995 22 6 1.2895 -1.9486 -1.4170 23 6 1.9353 0.1768 -2.3806 24 6 3.0810 1.1905 -2.3506 25 9 4.2988 0.5142 -2.2217 26 9 3.0813 1.9292 -3.5385 27 9 2.9104 2.0549 -1.2638 28 1 -0.3632 0.6048 0.8310 29 1 -0.3633 0.4173 -0.9391 30 1 -0.3633 -1.0219 0.1083 31 1 0.8519 1.6298 2.2985 32 1 2.5805 1.9689 2.0058 33 1 1.3188 2.3967 4.4485 34 1 3.0728 2.0616 4.2901 35 1 3.4971 -0.1163 6.0475 36 1 4.3711 0.0048 9.2644 37 1 3.5678 -0.6800 3.8120 38 1 2.0612 -1.6467 3.7896 39 1 0.2527 -1.7269 -1.6700 40 1 1.7529 -2.5012 -2.2343 41 1 1.3213 -2.5494 -0.5081 42 1 2.0098 -0.4291 -3.2837 43 1 0.9822 0.7054 -2.3753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690242521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:18 Heat of formation + Delta-G solvation = -156.327612 kcal Electronic energy + Delta-G solvation = -28801.987462 eV Core-core repulsion = 24275.124255 eV Total energy + Delta-G solvation = -4526.863208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.32768 -47.92238 -47.71131 -40.32888 -38.27256 -36.80272 -34.18576 -32.11859 -31.19281 -29.68204 -29.39850 -27.77464 -26.23315 -24.49698 -23.61002 -22.86285 -21.62503 -20.10828 -19.09408 -18.76300 -18.70138 -17.57245 -17.36884 -17.19855 -16.25524 -15.93742 -15.45162 -14.77810 -14.67249 -14.60319 -14.39449 -14.35934 -14.21985 -13.94329 -13.89861 -13.72103 -13.62860 -13.28552 -13.18606 -12.86635 -12.66464 -12.42709 -12.26124 -12.19168 -11.97168 -11.70939 -11.63040 -11.42509 -11.17762 -10.87554 -10.72460 -10.30222 -10.05886 -9.80111 -9.62817 -8.98902 -8.82273 -8.41394 -7.07087 -5.84353 -3.15163 2.39828 2.66202 2.86578 3.38415 3.39308 3.45031 3.47342 3.58612 3.71057 4.13713 4.38907 4.51641 4.53698 4.65923 4.74334 4.84460 5.01968 5.07385 5.14125 5.19203 5.25196 5.37624 5.40076 5.53975 5.58032 5.71551 5.73928 5.85385 5.95434 6.12621 6.22747 6.34590 6.36854 6.42356 6.54802 6.60453 6.88775 7.63551 7.70754 8.29615 8.33243 9.44630 9.98647 10.33419 11.37851 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.002715 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.214217 B =10310.256886 C =10644.460991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.043 3.957 3 H 0.118 0.882 4 C 0.540 3.460 5 O -0.531 6.531 6 N -0.611 5.611 7 C 0.099 3.901 8 C -0.155 4.155 9 C 0.172 3.828 10 H 0.064 0.936 11 N -0.715 5.715 12 C -0.245 4.245 13 H 0.073 0.927 14 C -0.010 4.010 15 N -0.929 5.929 16 Si 0.909 3.091 17 H -0.280 1.280 18 H -0.291 1.291 19 H -0.291 1.291 20 C 0.101 3.899 21 N -0.516 5.516 22 C 0.019 3.981 23 C 0.006 3.994 24 C 0.455 3.545 25 F -0.169 7.169 26 F -0.185 7.185 27 F -0.182 7.182 28 H 0.075 0.925 29 H 0.066 0.934 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.387 0.613 36 H 0.256 0.744 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.032 0.968 40 H 0.071 0.929 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.245 2.537 -24.929 26.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.068 4.068 3 H 0.135 0.865 4 C 0.327 3.673 5 O -0.407 6.407 6 N -0.346 5.346 7 C -0.025 4.025 8 C -0.197 4.197 9 C 0.060 3.940 10 H 0.082 0.918 11 N -0.355 5.355 12 C -0.376 4.376 13 H 0.091 0.909 14 C -0.207 4.207 15 N -0.577 5.577 16 Si 0.740 3.260 17 H -0.205 1.205 18 H -0.218 1.218 19 H -0.218 1.218 20 C -0.022 4.022 21 N -0.239 5.239 22 C -0.127 4.127 23 C -0.124 4.124 24 C 0.401 3.599 25 F -0.151 7.151 26 F -0.167 7.167 27 F -0.164 7.164 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.221 0.779 36 H 0.066 0.934 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.051 0.949 40 H 0.090 0.910 41 H 0.120 0.880 42 H 0.140 0.860 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.656 1.796 -24.783 25.724 hybrid contribution -0.653 0.792 0.745 1.268 sum -7.308 2.588 -24.039 25.258 Atomic orbital electron populations 1.22309 0.94229 1.03812 1.03194 1.22078 0.95201 0.99992 0.89577 0.86490 1.19709 0.78089 0.86669 0.82812 1.90639 1.49174 1.16675 1.84219 1.48407 1.68071 1.10194 1.07902 1.22150 1.00116 0.81009 0.99179 1.23426 1.03097 1.01633 0.91500 1.21294 0.96029 0.90830 0.85834 0.91759 1.42274 1.15107 1.77396 1.00701 1.19252 0.97400 1.35996 0.84915 0.90925 1.24782 0.96328 1.01694 0.97857 1.69675 1.10418 1.51844 1.25719 0.86101 0.78430 0.77794 0.83717 1.20489 1.21787 1.21789 1.22561 1.00430 0.97989 0.81221 1.61652 1.57185 1.04790 1.00272 1.22661 0.95086 0.90106 1.04863 1.23293 0.95371 0.95886 0.97860 1.20555 0.84986 0.81307 0.73099 1.93228 1.46857 1.79557 1.95439 1.93183 1.96798 1.79002 1.47701 1.93089 1.95334 1.72454 1.55513 0.90619 0.91560 0.91065 0.91960 0.91923 0.90691 0.90475 0.77897 0.93372 0.91296 0.90636 0.94925 0.90992 0.88030 0.85952 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.47 8.06 37.16 0.30 -1.17 16 2 C 0.04 0.47 2.08 -68.86 -0.14 0.32 16 3 H 0.12 1.24 4.45 -51.93 -0.23 1.01 16 4 C 0.54 8.11 7.01 -10.98 -0.08 8.04 16 5 O -0.53 -9.63 14.63 5.56 0.08 -9.55 16 6 N -0.61 -9.26 3.33 -170.49 -0.57 -9.83 16 7 C 0.10 1.28 6.13 -3.06 -0.02 1.26 16 8 C -0.16 -2.47 6.65 -24.89 -0.17 -2.63 16 9 C 0.17 3.25 3.70 -65.78 -0.24 3.00 16 10 H 0.06 1.22 8.11 -51.93 -0.42 0.80 16 11 N -0.71 -17.19 5.26 -51.35 -0.27 -17.46 16 12 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 13 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 14 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 15 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 16 Si 0.91 21.79 29.55 -169.99 -5.02 16.77 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 20 C 0.10 1.78 6.52 -2.51 -0.02 1.76 16 21 N -0.52 -5.29 4.24 -236.27 -1.00 -6.29 16 22 C 0.02 0.18 8.11 60.06 0.49 0.66 16 23 C 0.01 0.04 5.03 -3.82 -0.02 0.02 16 24 C 0.46 4.27 3.28 37.16 0.12 4.39 16 25 F -0.17 -2.01 17.13 2.25 0.04 -1.97 16 26 F -0.19 -1.66 17.32 2.25 0.04 -1.62 16 27 F -0.18 -1.90 14.61 2.25 0.03 -1.86 16 28 H 0.07 0.62 7.25 -51.93 -0.38 0.24 16 29 H 0.07 0.41 6.81 -51.93 -0.35 0.05 16 30 H 0.07 0.63 6.88 -51.93 -0.36 0.28 16 31 H 0.06 0.66 7.25 -51.93 -0.38 0.29 16 32 H 0.06 0.75 8.02 -51.93 -0.42 0.33 16 33 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 35 H 0.39 9.99 7.73 -40.82 -0.32 9.67 16 36 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 37 H 0.07 1.29 8.00 -51.93 -0.42 0.87 16 38 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 39 H 0.03 0.23 6.81 -51.93 -0.35 -0.13 16 40 H 0.07 0.56 8.12 -51.93 -0.42 0.13 16 41 H 0.10 1.21 5.88 -51.93 -0.31 0.91 16 42 H 0.12 0.62 7.91 -51.93 -0.41 0.21 16 43 H 0.09 0.44 6.64 -51.93 -0.35 0.10 16 LS Contribution 352.86 15.07 5.32 5.32 Total: -1.00 -31.60 352.86 -6.56 -38.16 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -5.91 Total: 6.45 kcal Atomic # 6 Polarization: 8.64 SS G_CDS: -0.02 Total: 8.62 kcal Atomic # 7 Polarization: -59.21 SS G_CDS: -1.11 Total: -60.32 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: 0.08 Total: -9.55 kcal Atomic # 9 Polarization: -5.56 SS G_CDS: 0.11 Total: -5.45 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.60 -6.56 -38.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690242521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.165 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds