Wall clock time and date at job start Tue Mar 31 2020 14:27:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.47140 * 2 1 4 4 C 1.50700 * 109.47232 * 120.00152 * 2 1 3 5 5 O 1.21276 * 120.00380 * 97.09205 * 4 2 1 6 6 N 1.34782 * 119.99711 * 277.09247 * 4 2 1 7 7 C 1.47022 * 125.64648 * 354.49411 * 6 4 2 8 8 C 1.54330 * 107.26929 * 178.97807 * 7 6 4 9 9 C 1.55163 * 102.94084 * 337.80894 * 8 7 6 10 10 H 1.09000 * 111.00406 * 277.38948 * 9 8 7 11 11 N 1.46496 * 111.00181 * 153.57646 * 9 8 7 12 12 C 1.36940 * 120.00150 * 89.30805 * 11 9 8 13 13 H 1.08000 * 119.99949 * 359.97438 * 12 11 9 14 14 C 1.38813 * 120.00095 * 179.97438 * 12 11 9 15 15 N 1.31625 * 120.00027 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99878 * 179.97438 * 14 12 11 17 17 H 1.48502 * 109.47031 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46694 * 119.99977 * 16 14 12 19 19 H 1.48501 * 109.47095 * 239.99806 * 16 14 12 20 20 C 1.47465 * 125.62850 * 174.50174 * 6 4 2 21 21 N 1.46905 * 109.46788 * 239.99671 * 2 1 3 22 22 C 1.46897 * 111.00120 * 314.45705 * 21 2 1 23 23 C 1.46899 * 110.99805 * 78.41096 * 21 2 1 24 24 C 1.53009 * 109.47275 * 76.98277 * 23 21 2 25 25 F 1.39894 * 109.46937 * 54.09631 * 24 23 21 26 26 F 1.39891 * 109.47275 * 174.10051 * 24 23 21 27 27 F 1.39907 * 109.46465 * 294.10199 * 24 23 21 28 28 H 1.09005 * 109.46561 * 306.04844 * 1 2 3 29 29 H 1.09000 * 109.47011 * 66.04195 * 1 2 3 30 30 H 1.08990 * 109.46867 * 186.05053 * 1 2 3 31 31 H 1.09004 * 109.88186 * 59.56344 * 7 6 4 32 32 H 1.08990 * 109.88648 * 298.39500 * 7 6 4 33 33 H 1.09000 * 110.71828 * 219.45081 * 8 7 6 34 34 H 1.08996 * 110.87213 * 96.24533 * 8 7 6 35 35 H 0.97003 * 120.00111 * 269.58124 * 11 9 8 36 36 H 0.96993 * 119.99677 * 180.02562 * 15 14 12 37 37 H 1.09000 * 110.35379 * 85.24812 * 20 6 4 38 38 H 1.08998 * 110.40122 * 322.91097 * 20 6 4 39 39 H 1.09001 * 109.46945 * 67.07453 * 22 21 2 40 40 H 1.08998 * 109.46725 * 187.08032 * 22 21 2 41 41 H 1.09005 * 109.47049 * 307.07948 * 22 21 2 42 42 H 1.09004 * 109.47050 * 196.97924 * 23 21 2 43 43 H 1.08995 * 109.47507 * 316.98025 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.3568 -1.8773 1.1670 6 7 2.1211 -0.0490 2.4014 7 6 1.8723 1.3870 2.5954 8 6 2.0676 1.6872 4.0965 9 6 1.8621 0.2988 4.7582 10 1 0.8023 0.0855 4.8976 11 7 2.5842 0.2111 6.0298 12 6 1.9723 0.5965 7.1927 13 1 0.9575 0.9656 7.1723 14 6 2.6564 0.5129 8.3976 15 7 3.8933 0.0636 8.4224 16 14 1.8219 1.0394 9.9838 17 1 0.4428 1.5035 9.6872 18 1 1.7655 -0.1125 10.9193 19 1 2.5939 2.1450 10.6059 20 6 2.4841 -0.6461 3.7000 21 7 2.0196 -0.6926 -1.1995 22 6 1.2895 -1.9486 -1.4170 23 6 1.9353 0.1768 -2.3806 24 6 3.0810 1.1905 -2.3506 25 9 4.2988 0.5142 -2.2217 26 9 3.0813 1.9292 -3.5385 27 9 2.9104 2.0549 -1.2638 28 1 -0.3632 0.6048 0.8310 29 1 -0.3633 0.4173 -0.9391 30 1 -0.3633 -1.0219 0.1083 31 1 0.8519 1.6298 2.2985 32 1 2.5805 1.9689 2.0058 33 1 1.3188 2.3967 4.4485 34 1 3.0728 2.0616 4.2901 35 1 3.4971 -0.1163 6.0475 36 1 4.3711 0.0048 9.2644 37 1 3.5678 -0.6800 3.8120 38 1 2.0612 -1.6467 3.7896 39 1 0.2527 -1.7269 -1.6700 40 1 1.7529 -2.5012 -2.2343 41 1 1.3213 -2.5494 -0.5081 42 1 2.0098 -0.4291 -3.2837 43 1 0.9822 0.7054 -2.3753 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690242521.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:27:18 Heat of formation + Delta-G solvation = -178.615038 kcal Electronic energy + Delta-G solvation = -28802.953918 eV Core-core repulsion = 24275.124255 eV Total energy + Delta-G solvation = -4527.829663 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -51.05550 -48.63458 -48.49170 -41.42258 -39.35671 -37.96215 -35.94381 -33.51234 -32.36420 -31.01451 -30.22082 -29.21852 -27.00005 -25.84555 -24.92961 -24.04428 -22.52266 -21.60921 -20.12294 -19.50135 -19.46932 -19.30082 -18.37492 -18.16928 -17.34290 -17.10802 -16.55285 -16.20102 -15.65717 -15.49665 -15.42564 -15.36522 -15.09367 -14.97831 -14.81360 -14.70882 -14.67304 -14.53600 -14.25516 -14.13969 -13.56182 -13.50135 -13.20842 -13.16837 -13.02988 -12.92432 -12.80738 -12.66166 -12.53198 -12.32435 -12.19728 -12.07200 -11.74874 -11.60270 -10.95758 -10.74172 -9.68516 -9.51143 -9.05248 -7.94932 -5.25427 1.49632 1.50386 1.54093 1.60291 1.73797 1.83472 2.55404 2.60723 2.91335 3.08106 3.33740 3.43436 3.46372 3.70189 3.85152 3.90611 4.03528 4.06507 4.10973 4.25917 4.28130 4.30229 4.44236 4.49904 4.59599 4.63906 4.68741 4.72190 4.83680 4.99312 5.08870 5.14752 5.23552 5.25454 5.42255 5.54230 5.68188 5.76578 6.25708 6.53956 7.13021 7.32229 8.03694 8.27522 9.28734 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.024724 B = 0.002715 C = 0.002630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.214217 B =10310.256886 C =10644.460991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.052 3.948 3 H 0.125 0.875 4 C 0.531 3.469 5 O -0.570 6.570 6 N -0.613 5.613 7 C 0.106 3.894 8 C -0.145 4.145 9 C 0.167 3.833 10 H 0.067 0.933 11 N -0.730 5.730 12 C -0.238 4.238 13 H 0.084 0.916 14 C -0.076 4.076 15 N -0.971 5.971 16 Si 0.974 3.026 17 H -0.261 1.261 18 H -0.297 1.297 19 H -0.295 1.295 20 C 0.110 3.890 21 N -0.542 5.542 22 C 0.024 3.976 23 C 0.013 3.987 24 C 0.450 3.550 25 F -0.190 7.190 26 F -0.183 7.183 27 F -0.190 7.190 28 H 0.080 0.920 29 H 0.097 0.903 30 H 0.062 0.938 31 H 0.098 0.902 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.059 0.941 35 H 0.373 0.627 36 H 0.251 0.749 37 H 0.050 0.950 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.082 0.918 41 H 0.067 0.933 42 H 0.146 0.854 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.756 4.119 -27.097 29.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.059 4.059 3 H 0.142 0.858 4 C 0.321 3.679 5 O -0.449 6.449 6 N -0.348 5.348 7 C -0.017 4.017 8 C -0.186 4.186 9 C 0.057 3.943 10 H 0.085 0.915 11 N -0.369 5.369 12 C -0.370 4.370 13 H 0.101 0.899 14 C -0.268 4.268 15 N -0.621 5.621 16 Si 0.803 3.197 17 H -0.185 1.185 18 H -0.225 1.225 19 H -0.222 1.222 20 C -0.014 4.014 21 N -0.266 5.266 22 C -0.122 4.122 23 C -0.116 4.116 24 C 0.395 3.605 25 F -0.171 7.171 26 F -0.164 7.164 27 F -0.171 7.171 28 H 0.099 0.901 29 H 0.116 0.884 30 H 0.081 0.919 31 H 0.117 0.883 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.077 0.923 35 H 0.205 0.795 36 H 0.059 0.941 37 H 0.068 0.932 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.164 0.836 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -9.221 3.412 -27.012 28.746 hybrid contribution 0.145 0.271 1.306 1.341 sum -9.076 3.683 -25.706 27.509 Atomic orbital electron populations 1.22317 0.91833 1.03761 1.05156 1.22028 0.96851 0.99290 0.87755 0.85792 1.20678 0.77102 0.86469 0.83685 1.90628 1.50743 1.18613 1.84886 1.48499 1.68108 1.11047 1.07103 1.22239 1.02762 0.79627 0.97027 1.23219 1.02541 0.99433 0.93372 1.21451 0.95478 0.93056 0.84292 0.91454 1.42448 1.14796 1.77589 1.02103 1.19664 0.97595 1.33983 0.85719 0.89861 1.25601 0.97072 1.02982 1.01157 1.69838 1.12082 1.54230 1.25963 0.85059 0.78187 0.76793 0.79614 1.18539 1.22463 1.22206 1.22210 0.99034 0.97356 0.82811 1.61498 1.58215 1.05727 1.01161 1.22568 0.96712 0.89430 1.03518 1.23421 0.95449 0.95473 0.97299 1.20990 0.84983 0.81630 0.72886 1.93190 1.48403 1.79978 1.95548 1.93186 1.96765 1.79025 1.47467 1.93067 1.95302 1.72797 1.55969 0.90100 0.88409 0.91873 0.88346 0.90295 0.89297 0.92256 0.79504 0.94052 0.93212 0.92027 0.92282 0.89895 0.91464 0.83566 0.86517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.20 8.06 71.98 0.58 -1.62 16 2 C 0.05 1.00 2.08 44.17 0.09 1.09 16 3 H 0.12 2.21 4.45 -2.39 -0.01 2.20 16 4 C 0.53 15.55 7.01 87.66 0.61 16.17 16 5 O -0.57 -21.08 14.63 -3.02 -0.04 -21.13 16 6 N -0.61 -18.06 3.33 -811.69 -2.70 -20.76 16 7 C 0.11 2.46 6.13 86.73 0.53 2.99 16 8 C -0.14 -4.39 6.65 31.79 0.21 -4.18 16 9 C 0.17 6.29 3.70 46.39 0.17 6.46 16 10 H 0.07 2.50 8.11 -2.39 -0.02 2.48 16 11 N -0.73 -35.83 5.26 -316.37 -1.66 -37.49 16 12 C -0.24 -12.71 9.97 84.03 0.84 -11.87 16 13 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 14 C -0.08 -4.27 5.50 84.86 0.47 -3.80 16 15 N -0.97 -59.03 13.06 21.65 0.28 -58.75 16 16 Si 0.97 45.12 29.55 68.60 2.03 47.14 16 17 H -0.26 -11.15 7.11 99.48 0.71 -10.45 16 18 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 19 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 20 C 0.11 3.97 6.52 86.85 0.57 4.54 16 21 N -0.54 -9.80 4.24 -901.44 -3.82 -13.63 16 22 C 0.02 0.39 8.11 127.69 1.04 1.42 16 23 C 0.01 0.14 5.03 86.31 0.43 0.57 16 24 C 0.45 7.35 3.28 71.99 0.24 7.58 16 25 F -0.19 -4.29 17.13 44.97 0.77 -3.51 16 26 F -0.18 -2.82 17.32 44.97 0.78 -2.04 16 27 F -0.19 -3.47 14.61 44.97 0.66 -2.81 16 28 H 0.08 0.97 7.25 -2.38 -0.02 0.95 16 29 H 0.10 0.66 6.81 -2.39 -0.02 0.64 16 30 H 0.06 0.94 6.88 -2.39 -0.02 0.92 16 31 H 0.10 1.66 7.25 -2.38 -0.02 1.64 16 32 H 0.08 1.65 8.02 -2.39 -0.02 1.63 16 33 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 34 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.37 20.10 7.73 -92.71 -0.72 19.38 16 36 H 0.25 14.81 8.31 -92.71 -0.77 14.04 16 37 H 0.05 1.97 8.00 -2.39 -0.02 1.95 16 38 H 0.06 2.36 8.09 -2.39 -0.02 2.34 16 39 H 0.06 0.61 6.81 -2.39 -0.02 0.59 16 40 H 0.08 1.11 8.12 -2.39 -0.02 1.09 16 41 H 0.07 1.58 5.88 -2.38 -0.01 1.57 16 42 H 0.15 0.88 7.91 -2.39 -0.02 0.86 16 43 H 0.12 0.57 6.64 -2.39 -0.02 0.56 16 Total: -1.00 -71.27 352.86 2.40 -68.88 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: 0.33 Total: 24.75 kcal Atomic # 6 Polarization: 13.57 SS G_CDS: 5.78 Total: 19.35 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -7.90 Total: -130.63 kcal Atomic # 8 Polarization: -21.08 SS G_CDS: -0.04 Total: -21.13 kcal Atomic # 9 Polarization: -10.57 SS G_CDS: 2.21 Total: -8.36 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Total: -71.27 2.40 -68.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690242521.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.736 kcal (2) G-P(sol) polarization free energy of solvation -71.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds