Wall clock time and date at job start Tue Mar 31 2020 14:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47635 * 2 1 4 4 C 1.53002 * 109.47246 * 239.99984 * 2 1 3 5 5 C 1.52999 * 109.47297 * 174.99929 * 4 2 1 6 6 N 1.46502 * 109.46901 * 179.97438 * 5 4 2 7 7 C 1.34775 * 119.99833 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00157 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00082 * 179.97438 * 7 6 5 10 10 O 1.42898 * 109.47173 * 179.97438 * 9 7 6 11 11 C 1.42895 * 113.99905 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47412 * 180.02562 * 11 10 9 13 13 C 1.38828 * 120.75751 * 89.99888 * 12 11 10 14 14 C 1.38048 * 119.29043 * 180.02562 * 13 12 11 15 15 N 1.31970 * 120.83522 * 0.02562 * 14 13 12 16 16 C 1.32250 * 121.64704 * 359.97438 * 15 14 13 17 17 O 1.35675 * 119.68436 * 179.97438 * 16 15 14 18 18 C 1.38386 * 120.75821 * 270.26582 * 12 11 10 19 19 N 1.46501 * 109.47481 * 119.99837 * 2 1 3 20 20 C 1.36932 * 120.00099 * 275.00144 * 19 2 1 21 21 H 1.08002 * 119.99955 * 359.97438 * 20 19 2 22 22 C 1.38816 * 120.00068 * 179.97438 * 20 19 2 23 23 N 1.31620 * 119.99743 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00292 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47138 * 90.00262 * 24 22 20 26 26 H 1.48499 * 109.47427 * 210.00571 * 24 22 20 27 27 H 1.48506 * 109.47040 * 330.00691 * 24 22 20 28 28 H 1.08994 * 109.47557 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47021 * 300.00406 * 1 2 3 30 30 H 1.09003 * 109.47011 * 59.99488 * 1 2 3 31 31 H 1.09000 * 109.47216 * 54.99824 * 4 2 1 32 32 H 1.08998 * 109.47013 * 295.00051 * 4 2 1 33 33 H 1.09000 * 109.46815 * 60.00546 * 5 4 2 34 34 H 1.08998 * 109.47189 * 300.00014 * 5 4 2 35 35 H 0.97005 * 120.00303 * 359.97438 * 6 5 4 36 36 H 1.08995 * 109.46602 * 60.00135 * 9 7 6 37 37 H 1.08997 * 109.47209 * 300.00685 * 9 7 6 38 38 H 1.09010 * 109.47007 * 60.00670 * 11 10 9 39 39 H 1.08999 * 109.47562 * 300.00683 * 11 10 9 40 40 H 1.07997 * 120.35496 * 0.02940 * 13 12 11 41 41 H 1.08001 * 119.58032 * 180.02562 * 14 13 12 42 42 H 0.96701 * 113.99703 * 90.00622 * 17 16 15 43 43 H 1.07994 * 120.44184 * 359.97438 * 18 12 11 44 44 H 0.97004 * 119.99539 * 94.99618 * 19 2 1 45 45 H 0.97001 * 120.00239 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3044 -2.5096 7 6 5.3740 -1.3408 -2.7747 8 8 6.1585 -0.8017 -2.0230 9 6 5.8765 -2.0522 -4.0046 10 8 7.3006 -1.9513 -4.0649 11 6 7.8815 -2.5970 -5.1995 12 6 9.3786 -2.4289 -5.1615 13 6 10.1816 -3.3609 -4.5181 14 6 11.5496 -3.1767 -4.5013 15 7 12.0983 -2.1291 -5.0870 16 6 11.3670 -1.2201 -5.7097 17 8 11.9729 -0.1582 -6.2981 18 6 9.9839 -1.3391 -5.7623 19 7 2.0183 -0.6906 1.1962 20 6 2.1491 -0.0075 2.3757 21 1 1.8926 1.0405 2.4241 22 6 2.6114 -0.6619 3.5092 23 7 2.9245 -1.9390 3.4501 24 14 2.7906 0.2700 5.1181 25 1 1.5228 0.1798 5.8863 26 1 3.8948 -0.3237 5.9139 27 1 3.0963 1.6951 4.8333 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9994 -1.0729 -0.4260 34 1 3.8531 0.4370 -1.3574 35 1 3.4258 -1.7366 -3.1102 36 1 5.4422 -1.5932 -4.8927 37 1 5.5877 -3.1024 -3.9603 38 1 7.4885 -2.1499 -6.1128 39 1 7.6348 -3.6585 -5.1794 40 1 9.7407 -4.2208 -4.0359 41 1 12.1787 -3.8990 -4.0025 42 1 12.2199 -0.3081 -7.2209 43 1 9.3893 -0.5929 -6.2682 44 1 2.2490 -1.6318 1.1526 45 1 3.2479 -2.3963 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690848452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:44 Heat of formation + Delta-G solvation = -75.478505 kcal Electronic energy + Delta-G solvation = -25763.717494 eV Core-core repulsion = 21782.216907 eV Total energy + Delta-G solvation = -3981.500587 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85529 -39.70031 -38.10602 -37.28013 -36.51555 -34.36830 -33.60176 -32.27259 -30.63604 -29.93290 -28.67932 -27.81177 -26.40994 -23.86130 -23.81863 -22.53121 -22.46894 -20.71397 -19.71063 -18.87608 -17.50098 -17.38647 -17.19909 -17.00182 -16.51493 -16.27712 -15.97786 -15.40478 -15.17690 -14.79342 -14.53966 -14.24500 -13.93339 -13.51826 -13.45911 -13.21507 -13.17767 -12.61778 -12.49283 -12.20255 -12.14584 -12.05963 -12.02193 -11.54975 -11.08160 -10.91582 -10.74442 -10.62282 -10.29736 -10.22694 -10.13526 -9.98826 -9.84366 -9.64773 -9.59589 -9.30797 -8.92329 -8.83005 -6.93895 -5.73490 -3.02172 0.61936 0.68419 2.69334 2.73191 3.13901 3.38249 3.46766 3.52387 3.54018 3.81778 4.21818 4.31467 4.59547 4.62665 4.65734 4.66132 4.74314 4.83185 4.90578 4.94050 5.10991 5.28157 5.30173 5.38569 5.46519 5.56839 5.67348 5.83202 5.87270 6.05605 6.10335 6.17013 6.33009 6.38574 6.45839 6.56095 6.67411 6.72371 6.86127 7.05777 7.09414 7.53113 7.58946 7.73737 8.33434 8.44883 9.56316 10.12574 10.47054 11.49175 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.001978 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.760530 B =14149.711673 C =15207.648808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.173 3.827 3 H 0.049 0.951 4 C -0.131 4.131 5 C 0.123 3.877 6 N -0.727 5.727 7 C 0.506 3.494 8 O -0.513 6.513 9 C 0.045 3.955 10 O -0.353 6.353 11 C 0.099 3.901 12 C -0.030 4.030 13 C -0.159 4.159 14 C 0.122 3.878 15 N -0.500 5.500 16 C 0.307 3.693 17 O -0.481 6.481 18 C -0.163 4.163 19 N -0.723 5.723 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.291 1.291 26 H -0.292 1.292 27 H -0.282 1.282 28 H 0.046 0.954 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.062 0.938 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.396 0.604 36 H 0.080 0.920 37 H 0.082 0.918 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.143 0.857 41 H 0.165 0.835 42 H 0.399 0.601 43 H 0.143 0.857 44 H 0.383 0.617 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.697 -4.980 -26.790 28.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.170 4.170 5 C 0.001 3.999 6 N -0.381 5.381 7 C 0.290 3.710 8 O -0.387 6.387 9 C -0.035 4.035 10 O -0.271 6.271 11 C 0.023 3.977 12 C -0.038 4.038 13 C -0.179 4.179 14 C -0.034 4.034 15 N -0.220 5.220 16 C 0.128 3.872 17 O -0.287 6.287 18 C -0.184 4.184 19 N -0.365 5.365 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 H 0.065 0.935 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.104 0.896 34 H 0.083 0.917 35 H 0.229 0.771 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.161 0.839 41 H 0.182 0.818 42 H 0.257 0.743 43 H 0.160 0.840 44 H 0.217 0.783 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.241 -3.913 -25.411 27.676 hybrid contribution -1.174 -0.471 0.019 1.265 sum 9.067 -4.384 -25.393 27.317 Atomic orbital electron populations 1.22422 0.99119 1.00812 0.99970 1.20159 0.91890 0.95623 0.86027 0.93264 1.22058 0.93778 1.01811 0.99376 1.21478 0.94413 0.97179 0.86854 1.45993 1.06606 1.57536 1.27946 1.20114 0.82805 0.81271 0.86789 1.90792 1.55052 1.44207 1.48697 1.22265 0.82875 1.00902 0.97492 1.88124 1.18178 1.76477 1.44367 1.21356 0.88844 0.97829 0.89713 1.19864 0.94940 0.93791 0.95189 1.22140 0.94920 1.01112 0.99694 1.22551 0.92737 0.93363 0.94788 1.67166 1.42324 1.02584 1.09885 1.19130 0.87451 0.86619 0.93968 1.84825 1.80179 1.32930 1.30801 1.22029 0.94901 0.98527 1.02937 1.42447 1.78094 1.10642 1.05351 1.19218 1.36530 0.93843 0.87309 0.91201 1.24730 1.02138 0.95984 0.98082 1.69651 1.50918 1.08689 1.28849 0.86212 0.77205 0.78901 0.84010 1.21838 1.21800 1.20756 0.93534 0.92709 0.94591 0.91911 0.91575 0.89622 0.91734 0.77075 0.90221 0.90029 0.91563 0.91320 0.83923 0.81832 0.74329 0.83965 0.78304 0.93559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.49 37.15 0.35 -2.44 16 2 C 0.17 3.27 2.89 -67.93 -0.20 3.08 16 3 H 0.05 0.96 8.08 -51.93 -0.42 0.54 16 4 C -0.13 -1.93 4.87 -26.73 -0.13 -2.06 16 5 C 0.12 2.01 5.56 -4.04 -0.02 1.99 16 6 N -0.73 -9.18 5.56 -60.29 -0.33 -9.51 16 7 C 0.51 7.38 7.91 -10.98 -0.09 7.29 16 8 O -0.51 -10.58 16.50 -14.36 -0.24 -10.81 16 9 C 0.04 0.42 6.42 36.01 0.23 0.65 16 10 O -0.35 -4.24 9.86 -55.14 -0.54 -4.79 16 11 C 0.10 0.75 6.11 36.01 0.22 0.97 16 12 C -0.03 -0.27 5.54 -104.35 -0.58 -0.85 16 13 C -0.16 -1.32 9.81 -39.43 -0.39 -1.71 16 14 C 0.12 1.08 11.18 -17.56 -0.20 0.88 16 15 N -0.50 -5.58 10.39 -13.33 -0.14 -5.72 16 16 C 0.31 3.18 7.74 -17.12 -0.13 3.05 16 17 O -0.48 -4.31 13.56 -18.73 -0.25 -4.56 16 18 C -0.16 -1.50 9.75 -39.27 -0.38 -1.88 16 19 N -0.72 -17.63 4.57 -53.43 -0.24 -17.88 16 20 C -0.24 -6.58 9.93 -15.06 -0.15 -6.73 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 23 N -0.93 -28.39 13.06 55.49 0.72 -27.66 16 24 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 25 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 26 H -0.29 -7.46 7.11 56.52 0.40 -7.05 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 28 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.09 1.77 7.75 -51.93 -0.40 1.37 16 34 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 35 H 0.40 3.36 8.47 -40.82 -0.35 3.02 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.35 8.10 -51.92 -0.42 -0.07 16 39 H 0.07 0.36 8.10 -51.93 -0.42 -0.06 16 40 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 41 H 0.16 0.96 8.06 -52.49 -0.42 0.54 16 42 H 0.40 1.31 9.06 45.56 0.41 1.72 16 43 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 44 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 45 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 389.88 15.07 5.88 5.88 Total: -1.00 -38.85 389.88 -7.84 -46.69 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -6.11 Total: 8.81 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.55 Total: 1.76 kcal Atomic # 7 Polarization: -60.78 SS G_CDS: 0.01 Total: -60.77 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -1.03 Total: -20.16 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -38.85 -7.84 -46.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690848452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.785 kcal (2) G-P(sol) polarization free energy of solvation -38.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds