Wall clock time and date at job start Tue Mar 31 2020 14:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09003 * 109.47635 * 2 1 4 4 C 1.53002 * 109.47246 * 239.99984 * 2 1 3 5 5 C 1.52999 * 109.47297 * 174.99929 * 4 2 1 6 6 N 1.46502 * 109.46901 * 179.97438 * 5 4 2 7 7 C 1.34775 * 119.99833 * 180.02562 * 6 5 4 8 8 O 1.21286 * 120.00157 * 0.02562 * 7 6 5 9 9 C 1.50707 * 120.00082 * 179.97438 * 7 6 5 10 10 O 1.42898 * 109.47173 * 179.97438 * 9 7 6 11 11 C 1.42895 * 113.99905 * 179.97438 * 10 9 7 12 12 C 1.50700 * 109.47412 * 180.02562 * 11 10 9 13 13 C 1.38828 * 120.75751 * 89.99888 * 12 11 10 14 14 C 1.38048 * 119.29043 * 180.02562 * 13 12 11 15 15 N 1.31970 * 120.83522 * 0.02562 * 14 13 12 16 16 C 1.32250 * 121.64704 * 359.97438 * 15 14 13 17 17 O 1.35675 * 119.68436 * 179.97438 * 16 15 14 18 18 C 1.38386 * 120.75821 * 270.26582 * 12 11 10 19 19 N 1.46501 * 109.47481 * 119.99837 * 2 1 3 20 20 C 1.36932 * 120.00099 * 275.00144 * 19 2 1 21 21 H 1.08002 * 119.99955 * 359.97438 * 20 19 2 22 22 C 1.38816 * 120.00068 * 179.97438 * 20 19 2 23 23 N 1.31620 * 119.99743 * 0.02562 * 22 20 19 24 24 Si 1.86792 * 120.00292 * 179.97438 * 22 20 19 25 25 H 1.48509 * 109.47138 * 90.00262 * 24 22 20 26 26 H 1.48499 * 109.47427 * 210.00571 * 24 22 20 27 27 H 1.48506 * 109.47040 * 330.00691 * 24 22 20 28 28 H 1.08994 * 109.47557 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47021 * 300.00406 * 1 2 3 30 30 H 1.09003 * 109.47011 * 59.99488 * 1 2 3 31 31 H 1.09000 * 109.47216 * 54.99824 * 4 2 1 32 32 H 1.08998 * 109.47013 * 295.00051 * 4 2 1 33 33 H 1.09000 * 109.46815 * 60.00546 * 5 4 2 34 34 H 1.08998 * 109.47189 * 300.00014 * 5 4 2 35 35 H 0.97005 * 120.00303 * 359.97438 * 6 5 4 36 36 H 1.08995 * 109.46602 * 60.00135 * 9 7 6 37 37 H 1.08997 * 109.47209 * 300.00685 * 9 7 6 38 38 H 1.09010 * 109.47007 * 60.00670 * 11 10 9 39 39 H 1.08999 * 109.47562 * 300.00683 * 11 10 9 40 40 H 1.07997 * 120.35496 * 0.02940 * 13 12 11 41 41 H 1.08001 * 119.58032 * 180.02562 * 14 13 12 42 42 H 0.96701 * 113.99703 * 90.00622 * 17 16 15 43 43 H 1.07994 * 120.44184 * 359.97438 * 18 12 11 44 44 H 0.97004 * 119.99539 * 94.99618 * 19 2 1 45 45 H 0.97001 * 120.00239 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6133 -1.3137 6 7 4.0531 -1.3044 -2.5096 7 6 5.3740 -1.3408 -2.7747 8 8 6.1585 -0.8017 -2.0230 9 6 5.8765 -2.0522 -4.0046 10 8 7.3006 -1.9513 -4.0649 11 6 7.8815 -2.5970 -5.1995 12 6 9.3786 -2.4289 -5.1615 13 6 10.1816 -3.3609 -4.5181 14 6 11.5496 -3.1767 -4.5013 15 7 12.0983 -2.1291 -5.0870 16 6 11.3670 -1.2201 -5.7097 17 8 11.9729 -0.1582 -6.2981 18 6 9.9839 -1.3391 -5.7623 19 7 2.0183 -0.6906 1.1962 20 6 2.1491 -0.0075 2.3757 21 1 1.8926 1.0405 2.4241 22 6 2.6114 -0.6619 3.5092 23 7 2.9245 -1.9390 3.4501 24 14 2.7906 0.2700 5.1181 25 1 1.5228 0.1798 5.8863 26 1 3.8948 -0.3237 5.9139 27 1 3.0963 1.6951 4.8333 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.6053 -0.2618 -2.1370 32 1 1.7516 -1.7715 -1.2056 33 1 3.9994 -1.0729 -0.4260 34 1 3.8531 0.4370 -1.3574 35 1 3.4258 -1.7366 -3.1102 36 1 5.4422 -1.5932 -4.8927 37 1 5.5877 -3.1024 -3.9603 38 1 7.4885 -2.1499 -6.1128 39 1 7.6348 -3.6585 -5.1794 40 1 9.7407 -4.2208 -4.0359 41 1 12.1787 -3.8990 -4.0025 42 1 12.2199 -0.3081 -7.2209 43 1 9.3893 -0.5929 -6.2682 44 1 2.2490 -1.6318 1.1526 45 1 3.2479 -2.3963 4.2420 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690848452.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:43 Heat of formation + Delta-G solvation = -108.782310 kcal Electronic energy + Delta-G solvation = -25765.161655 eV Core-core repulsion = 21782.216907 eV Total energy + Delta-G solvation = -3982.944749 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50417 -40.79672 -38.89506 -38.13314 -37.85724 -35.82599 -34.28795 -34.12959 -31.36643 -31.26992 -30.17588 -28.80901 -27.17035 -25.80307 -24.50562 -23.87893 -23.09977 -21.93817 -21.14034 -19.56449 -19.27225 -18.23981 -18.07318 -17.90304 -17.25128 -17.13462 -16.81699 -16.65203 -16.39739 -16.06086 -15.57571 -15.37015 -15.32367 -15.07854 -14.48327 -14.20301 -14.15571 -14.03709 -13.55637 -13.39385 -13.23140 -12.86247 -12.82265 -12.75387 -12.68241 -12.62306 -12.28295 -12.21625 -12.11958 -11.63064 -11.58984 -11.01475 -10.93678 -10.75539 -10.73484 -10.51753 -10.10049 -9.95211 -8.97262 -7.93114 -5.19289 -0.02715 0.03537 1.44989 1.46991 1.54607 1.60636 1.86560 2.52610 2.56678 2.68494 3.12797 3.41176 3.62383 3.70114 3.83213 3.93172 4.02824 4.04960 4.05259 4.20755 4.23093 4.26927 4.34632 4.40721 4.44224 4.57320 4.68178 4.73207 4.79265 4.84366 4.90184 5.04403 5.12368 5.23011 5.23768 5.41590 5.45342 5.54355 5.54397 5.63405 6.00623 6.30447 6.59335 6.61933 6.89367 7.30801 7.36348 8.15017 8.35729 9.30453 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.015101 B = 0.001978 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1853.760530 B =14149.711673 C =15207.648808 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.161 3.839 3 H 0.040 0.960 4 C -0.113 4.113 5 C 0.133 3.867 6 N -0.708 5.708 7 C 0.497 3.503 8 O -0.587 6.587 9 C 0.053 3.947 10 O -0.398 6.398 11 C 0.098 3.902 12 C -0.042 4.042 13 C -0.162 4.162 14 C 0.111 3.889 15 N -0.532 5.532 16 C 0.290 3.710 17 O -0.495 6.495 18 C -0.171 4.171 19 N -0.735 5.735 20 C -0.232 4.232 21 H 0.073 0.927 22 C -0.080 4.080 23 N -0.969 5.969 24 Si 0.965 3.035 25 H -0.285 1.285 26 H -0.300 1.300 27 H -0.273 1.273 28 H 0.046 0.954 29 H 0.030 0.970 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.075 0.925 33 H 0.032 0.968 34 H 0.047 0.953 35 H 0.421 0.579 36 H 0.123 0.877 37 H 0.118 0.882 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.164 0.836 41 H 0.187 0.813 42 H 0.419 0.581 43 H 0.156 0.844 44 H 0.372 0.628 45 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.967 -5.358 -29.393 30.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.053 3.947 3 H 0.058 0.942 4 C -0.152 4.152 5 C 0.009 3.991 6 N -0.362 5.362 7 C 0.284 3.716 8 O -0.466 6.466 9 C -0.026 4.026 10 O -0.317 6.317 11 C 0.022 3.978 12 C -0.050 4.050 13 C -0.182 4.182 14 C -0.045 4.045 15 N -0.253 5.253 16 C 0.112 3.888 17 O -0.305 6.305 18 C -0.192 4.192 19 N -0.376 5.376 20 C -0.364 4.364 21 H 0.091 0.909 22 C -0.272 4.272 23 N -0.621 5.621 24 Si 0.795 3.205 25 H -0.212 1.212 26 H -0.226 1.226 27 H -0.198 1.198 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.095 0.905 31 H 0.127 0.873 32 H 0.094 0.906 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.259 0.741 36 H 0.140 0.860 37 H 0.136 0.864 38 H 0.111 0.889 39 H 0.114 0.886 40 H 0.182 0.818 41 H 0.204 0.796 42 H 0.280 0.720 43 H 0.173 0.827 44 H 0.204 0.796 45 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.445 -4.280 -28.115 29.666 hybrid contribution -0.638 -0.312 0.715 1.007 sum 7.807 -4.593 -27.400 28.859 Atomic orbital electron populations 1.22252 0.96996 1.01113 1.00856 1.20492 0.93254 0.95178 0.85802 0.94182 1.21904 0.92144 1.02254 0.98873 1.21083 0.95509 0.95968 0.86563 1.45736 1.06946 1.56669 1.26885 1.21248 0.82485 0.80221 0.87681 1.90762 1.56864 1.47489 1.51529 1.22361 0.82141 1.02380 0.95683 1.88061 1.19507 1.77607 1.46523 1.21587 0.87442 0.99378 0.89346 1.20228 0.96262 0.93658 0.94879 1.22446 0.94755 1.01716 0.99273 1.23019 0.93655 0.93248 0.94537 1.67173 1.43394 1.03656 1.11043 1.19375 0.88145 0.86835 0.94475 1.84764 1.80257 1.32935 1.32562 1.22217 0.94574 0.99118 1.03245 1.42647 1.78378 1.10249 1.06291 1.19594 1.34274 0.94055 0.88486 0.90895 1.25486 1.03416 0.96920 1.01341 1.69799 1.52980 1.10127 1.29172 0.85245 0.76846 0.78015 0.80353 1.21235 1.22646 1.19783 0.93494 0.95031 0.90482 0.87343 0.90648 0.94904 0.93445 0.74085 0.85964 0.86436 0.88911 0.88647 0.81818 0.79608 0.71970 0.82676 0.79609 0.94295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.84 9.49 71.98 0.68 -4.16 16 2 C 0.16 5.89 2.89 44.99 0.13 6.02 16 3 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 4 C -0.11 -3.05 4.87 30.59 0.15 -2.90 16 5 C 0.13 4.31 5.56 86.38 0.48 4.79 16 6 N -0.71 -16.50 5.56 -463.05 -2.57 -19.08 16 7 C 0.50 13.93 7.91 87.66 0.69 14.62 16 8 O -0.59 -25.00 16.50 15.99 0.26 -24.74 16 9 C 0.05 0.82 6.42 71.24 0.46 1.28 16 10 O -0.40 -8.70 9.86 -129.94 -1.28 -9.98 16 11 C 0.10 1.18 6.11 71.24 0.44 1.61 16 12 C -0.04 -0.70 5.54 -19.69 -0.11 -0.81 16 13 C -0.16 -2.51 9.81 22.37 0.22 -2.29 16 14 C 0.11 1.93 11.18 84.63 0.95 2.88 16 15 N -0.53 -12.04 10.39 -308.94 -3.21 -15.24 16 16 C 0.29 6.07 7.74 84.79 0.66 6.73 16 17 O -0.50 -8.99 13.56 -89.92 -1.22 -10.21 16 18 C -0.17 -3.04 9.75 22.47 0.22 -2.82 16 19 N -0.73 -36.27 4.57 -322.94 -1.48 -37.75 16 20 C -0.23 -13.00 9.93 84.04 0.83 -12.17 16 21 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.08 -4.69 5.50 84.86 0.47 -4.22 16 23 N -0.97 -60.71 13.06 21.65 0.28 -60.42 16 24 Si 0.97 47.81 29.55 68.60 2.03 49.83 16 25 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 26 H -0.30 -15.09 7.11 99.48 0.71 -14.38 16 27 H -0.27 -12.91 7.11 99.48 0.71 -12.20 16 28 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 32 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 33 H 0.03 1.42 7.75 -2.39 -0.02 1.40 16 34 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 35 H 0.42 5.49 8.47 -92.70 -0.79 4.70 16 36 H 0.12 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.12 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.09 0.60 8.10 -2.38 -0.02 0.58 16 39 H 0.10 0.61 8.10 -2.39 -0.02 0.59 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.19 2.06 8.06 -2.91 -0.02 2.04 16 42 H 0.42 2.78 9.06 -74.06 -0.67 2.10 16 43 H 0.16 2.17 8.06 -2.91 -0.02 2.14 16 44 H 0.37 19.81 7.80 -92.71 -0.72 19.08 16 45 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -90.58 389.88 -2.08 -92.66 By element: Atomic # 1 Polarization: 27.52 SS G_CDS: -1.15 Total: 26.37 kcal Atomic # 6 Polarization: 2.30 SS G_CDS: 6.26 Total: 8.56 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -6.98 Total: -132.49 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -2.24 Total: -44.93 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.03 Total: 49.83 kcal Total: -90.58 -2.08 -92.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690848452.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.119 kcal (2) G-P(sol) polarization free energy of solvation -90.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds